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viral-ngs

A set of scripts and tools for the analysis of viral NGS data.

More detailed documentation can be found at http://viral-ngs.readthedocs.org/ This includes installation instructions, usage instructions for the command line tools, and usage of the pipeline infrastructure.

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Viral genomics analysis pipelines

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  • Python 98.7%
  • Shell 1.1%
  • Roff 0.2%