ConsensusCore is a library of C++ algorithms for PacBio multiple sequence consensus that powers Quiver (Python) and ConsensusTools (.NET).

To install Quiver, you will need to install ConsensusCore and GenomicConsensus.

For Python:

% python setup.py install [configure flags, see ./configure --help]

For .NET (command line):

./configure  [see ./configure --help for details]
make csharp

For .NET (MonoDevelop):

run ./configure as above, but then open the ConsensusCore.csproj in MonoDevelop and build.

.NET doesn't handle native libraries very gracefully. In order for client tools to use the libConsensusCore.so, the library needs to be copied to the bin/{Debug,Release} directory for every assembly that transitively depends on ConsensusCore and creates an executable. You can do this using a pre-build rule.

On OS X, the build uses clang++, but we resort back to libstdc++ to avoid some compatibility issues. This means you will have to make sure to compile your gmock installation with -stdlib=libstdc++ as well, if you are trying to run the tests.