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The SparseX sparse kernel optimization library
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SparseX library v1.0.0 ********************** Copyright (C) 2011-2014, Computing Systems Laboratory (CSLab), NTUA. All rights reserved. This file is distributed under the BSD License. See LICENSE.txt for details. ===================== CONTENTS OF THIS FILE ===================== 1. Introduction 2. Requirements 3. Installation 4. Building the documentation 5. Testing 6. License 7. Maintainers =============== 1. INTRODUCTION =============== The SparseX library is a collection of low-level primitives written in the C/C++ programming languages, that provides the means to developers of solver libraries and of scientific and engineering applications to easily attain high performance of the Sparse Matrix-by-Vector multiplication kernel (SpMV) on modern multicore architectures. The SparseX package uses the Compressed Sparse eXtended format for sparse matrices. This format seeks to minimize the memory footprint of the column index array of the typical Compressed Sparse Row (CSR) format by exploiting dense substructures inside the sparse matrix. Instead of storing a single index for every nonzero element of the sparse matrix, CSX stores a short description for each substructure found in the matrix (and selected for encoding). This technique can save significant amount of main memory storage and minimize the bandwidth requirements of the Sparse Matrix-Vector Multiplication (SpMV) kernel. Finally, the CSX format employs runtime code generation (using the LLVM compiler infrastructure) for emitting optimized SpMV routines for each encoded pattern. More information about the CSX format can be found in: V. Karakasis, T. Gkountouvas, K. Kourtis, G. Goumas, and N. Koziris. "An extended compression format for the optimization of sparse matrix-vector multiplication". IEEE Transactions on Parallel and Distributed Systems (TPDS), 24(10):1930–1940, 2013. IEEE. T. Gkountouvas, V. Karakasis, K. Kourtis, G. Goumas, and N. Koziris. "Improving the performance of the symmetric sparse matrix-vector multiplication in multicore". In 27th IEEE International Parallel & Distributed Processing Symposium (IPDPS'13), Boston, MA, USA, 2013. IEEE. K. Kourtis, V. Karakasis, G. Goumas, and N. Koziris, "CSX: An extended compression format for SpMV on shared memory systems," 16th ACM SIGPLAN Annual Symposium on Principles and Practice of Parallel Programming (PPoPP'11) San Antonio, TX, USA, February 12-16, 2011. To download the latest version, obtain the User's Guide (which also includes installation instructions), or get help using SparseX, see the SparseX home page: http://research.cslab.ece.ntua.gr/sparsex =============== 2. REQUIREMENTS =============== * A fairly recent Linux OS * LLVM >= 3.0 and Clang * Boost Library >= 1.48 (regex, serialization, system, thread) * numactl library >= 2.0.7 * gcc/g++ >= 4.6 =============== 3. INSTALLATION =============== To get the latest version of the SparseX library, you can Option 1: visit https://github.com/cslab-ntua/sparsex and download a tarball of the latest release Option 2: clone the git repository by typing $ git clone git://github.com/cslab-ntua/sparsex.git The simplest way to compile this package is: 1. If the library has been downloaded in means of cloning the git repository or downloading the tarball available on the github link, you must first run: $ autoreconf -vi in order to remake all of the configure scripts. 2. ‘cd’ to the directory containing the package’s source code and type ‘./configure’ to configure the package for your system. If you have installed LLVM/Clang in a non-standard location that is not in your path, you can instruct the compilation process to use your preferred LLVM installation through the ‘--with-llvm’ configuration option (by providing the absolute path to the LLVM configuration script “llvm-config”). Similarly for the Boost library you can use the ‘--with-boostdir’ option. $ cd SPARSEX_DIR $ ./configure [options] 3. Type ‘make’ to compile the package. You can speed up the compilation by using multiple tasks with the ‘-j’ flag of make: $ make -j8 4. Type ‘make install’ to install the library and any data files and documentation. When installing into a prefix owned by root, it is recommended that the package be configured and built as a regular user, and only the ‘make install’ phase executed with root privileges. By default, ‘make install’ installs the library under /usr/local/lib and include files under /usr/local/include. You can specify an installation prefix other than /usr/local by giving ‘configure’ in step 1 the option ‘--prefix=PREFIX’, where PREFIX must be an absolute directory path. $ make install After the installation process is complete, a utility named 'sparsex-config' will also be installed in your ${prefix}/bin that allows either the user or other programs that are dependent on the SparseX library to retrieve installation information, e.g. the installation prefix of the package, compiler flags etc. For more details type: $ sparsex-config --help See INSTALL for more details on the installation process and the available options and also refer to the library's User's Guide. ============================= 4. BUILDING THE DOCUMENTATION ============================= During the installation process ('make install') the library's documentation is also built (in html format) by default in the /doc subdirectory of the installation directory. This includes the documentation of the C API (in /api) and that of the C++ internal library (in /devel). However, if a developer wishes to update the documentation of either the API or the internal library she can simply type: $ make doc for updating the entire documentation, or $ make doc-api $ make doc-devel for updating separate levels. ========== 5. TESTING ========== The test/src subdirectory of the installation directory includes a testing utility 'test_sparsex' for the SparseX library. This is not installed by default and requires you to type 'make check' in test/src/. This executable tests different aspects of the library and is important for verifying that the library works properly on your system. To facilitate the testing process, the 'test-sparsex.sh' script is available in the test/scripts subdirectory. Simply type: $ ./test/scripts/test-sparsex.sh from the top level of the build directory and a number of tests will be performed with their progress (PASSED or FAILED) printed on stdout. Common pitfalls: * In case the library has been installed in a non-standard location, you must explicitly add the library directory to the LD_LIBRARY_PATH environment variable before execution, e.g. $ export LD_LIBRARY_PATH=${LIBDIR}:$LD_LIBRARY_PATH ========== 6. LICENSE ========== The SparseX package is distributed under the BSD Licence. See `LICENCE.txt' for more information. ============== 7. MAINTAINERS ============== The SparseX library was developed in the Computing Systems Laboratory of the National Technical University of Athens (NTUA) and is actively maintained by: Athena Elafrou athena<at>cslab.ece.ntua.gr Vasileios Karakasis bkk<at>cslab.ece.ntua.gr Past contributors include: Kornilios Kourtis kkourt<at>cslab.ece.ntua.gr Theodoros Gkountouvas thgoud<at>cslab.ece.ntua.gr
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The SparseX sparse kernel optimization library
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