treebest

My git clone of Heng Li's treebest from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/ . It shows the history of the code, as opposite to Heng Li's version on GitHub which imports the whole codebase as just 1 commit.

I am not maintaining this software, this repository is for a historical purpose only.

Name		Name	Last commit message	Last commit date
Latest commit History 19 Commits
align_lib		align_lib
common		common
examples		examples
phyml		phyml
scripts		scripts
ACKNOWLEDGEMENTS		ACKNOWLEDGEMENTS
AUTHORS		AUTHORS
COPYING		COPYING
ChangeLog		ChangeLog
FUTURES		FUTURES
INSTALL		INSTALL
Makefile		Makefile
Makefile.mac		Makefile.mac
NEWS		NEWS
PROBLEMS		PROBLEMS
README.md		README.md
algo.h		algo.h
align.c		align.c
align.h		align.h
aln_mask.c		aln_mask.c
backtrans.cc		backtrans.cc
best.c		best.c
best.h		best.h
brent.c		brent.c
bs_nj.c		bs_nj.c
compare.cc		compare.cc
cpp_utils.cc		cpp_utils.cc
cpp_utils.h		cpp_utils.h
cut_tree.c		cut_tree.c
doxygen.conf		doxygen.conf
eps.h		eps.h
est_len.c		est_len.c
filter.c		filter.c
flcallback.cc		flcallback.cc
flglobal.cc		flglobal.cc
flglobal.h		flglobal.h
flnjtree.cc		flnjtree.cc
flnjtree_ui.fl		flnjtree_ui.fl
flworkspace.cc		flworkspace.cc
lost.c		lost.c
main.c		main.c
make_ng86.c		make_ng86.c
make_ng86.h		make_ng86.h
mmerge.cc		mmerge.cc
ng86_ds.c		ng86_ds.c
nhx_output.cc		nhx_output.cc
nj.c		nj.c
nj2.c		nj2.c
order.c		order.c
ortho.c		ortho.c
output.c		output.c
parser.l		parser.l
parser.y		parser.y
phyml.c		phyml.c
phyml.h		phyml.h
pre_cons.c		pre_cons.c
prob_dist.c		prob_dist.c
read.c		read.c
read_aln.cc		read_aln.cc
reroot.c		reroot.c
sdi.c		sdi.c
simulate.c		simulate.c
spec-ens.nh		spec-ens.nh
spec-enstax.nh		spec-enstax.nh
spec-taxon_id.nh		spec-taxon_id.nh
spec.c		spec.c
spec.nh		spec.nh
subtree.c		subtree.c
task.c		task.c
timeout.c		timeout.c
tree.h		tree.h
tree_plot.c		tree_plot.c
tree_plot.h		tree_plot.h
treebest.texi		treebest.texi
trimpoor.cc		trimpoor.cc
utils.h		utils.h
utils1.c		utils1.c
utils2.c		utils2.c

muffato/treebest