reworkhow/OSIM
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OSIM ==== OSIM1.0 - basic functions to simulate populations and get genotypes at the last generation - mutations are saved as new founders. OSIM1.1 - an SimPop class to pack information like: number of chromesome, number of breed, generations and simulation process. This makes the main.cpp file clear. OSIM2.0 - new method to sample and save mutations(Dorian). 7/10/2014 OSIM1.2 - add pedsample, simulation with pedigree - add ped.h to solve the problem with including files with each other. 7/20/2014 OSIM1.3 - add functions in SimPop class to make crossing between two populations possible. - make the structure more clear. 12/1/2014 GenSim1.3 - add functions to use files to read in genome info for several chromosomes. GenSim1.13 - optimize code to follow DRY priciples - add genoinfo file and haplotypes files. 1/26/2015 GenSim1.4 - add phenotype simulation functions
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