GitHub - timflutre/quantgen: My repo for code useful in quantitative genetics and miscellaneous scripts.

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My repo for code useful in quantitative genetics and miscellaneous scripts.

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Name		Name	Last commit message	Last commit date
Latest commit History 565 Commits
breeding-game		breeding-game
.gitattributes		.gitattributes
.gitignore		.gitignore
CatGroupedFiles.py		CatGroupedFiles.py
GetExpLevelsPerGene.py		GetExpLevelsPerGene.py
GetGeoData.py		GetGeoData.py
LaunchImpute.py		LaunchImpute.py
README		README
citeulike2others.py		citeulike2others.py
demultiplex.py		demultiplex.py
estimLd.R		estimLd.R
extract_bed_from_names.cpp		extract_bed_from_names.cpp
extract_fastq.py		extract_fastq.py
fastqc_cat-png.bash		fastqc_cat-png.bash
gbs.py		gbs.py
hapmap2impute.py		hapmap2impute.py
how-to_SRA-submission.md		how-to_SRA-submission.md
impute2bimbam.cpp		impute2bimbam.cpp
impute2eigenstrat.py		impute2eigenstrat.py
install_packages_home.bash		install_packages_home.bash
matrixeqtl.R		matrixeqtl.R
myprogram.cpp		myprogram.cpp
myslides.tex		myslides.tex
parse_sam.py		parse_sam.py
plink2impute.py		plink2impute.py
qvalue.R		qvalue.R
rmd2out.R		rmd2out.R
submit.bash		submit.bash
test_demultiplex.py		test_demultiplex.py
test_eqtlbma.cpp		test_eqtlbma.cpp
test_gbs.py		test_gbs.py
test_trimfilter.py		test_trimfilter.py
transpose.py		transpose.py
trimfilter.py		trimfilter.py
utils.cpp		utils.cpp
utils.h		utils.h
utils_fastqc.R		utils_fastqc.R
utils_io.cpp		utils_io.cpp
utils_io.hpp		utils_io.hpp
utils_math.cpp		utils_math.cpp
utils_math.hpp		utils_math.hpp
utils_quantgen.R		utils_quantgen.R

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This directory contains documents, scripts and programs that I often use
for my research, particularly in quantitative genetics.

Feel free to make pull requests. However, make sure first that you work with
the UTF-8 encoding, otherwise:
$ iconv --from-code=ISO-8859-1 --to-code=UTF-8 myscript_ISO.R > myscript.R
If you work on Windows, do this:
$ git config --global core.autocrlf true
If you work on Linux or Mac, do that:
$ git config --global core.autocrlf input