Exemplos de DICOMImageBlockDescriptor::SetImageFrameList em C++ (Cpp)

Exemplo n.º 1

Arquivo: mitkTestDICOMLoading.cpp Projeto: 0r/MITK

mitk::Image::Pointer
mitk::TestDICOMLoading
::DecorateVerifyCachedImage( const StringList& files, mitk::DICOMTagCache* tagCache, mitk::Image::Pointer cachedImage )
{
  DICOMImageBlockDescriptor block;

  DICOMImageFrameList framelist;
  for (auto iter = files.begin();
       iter != files.end();
       ++iter)
  {
    framelist.push_back( DICOMImageFrameInfo::New(*iter) );
  }

  block.SetImageFrameList( framelist );

  block.SetTagCache( tagCache );
  block.SetMitkImage( cachedImage ); // this should/will create a propertylist describing the image slices
  return block.GetMitkImage();
}

Exemplo n.º 2

Arquivo: mitkThreeDnTDICOMSeriesReader.cpp Projeto: Cdebus/MITK

mitk::DICOMITKSeriesGDCMReader::SortingBlockList
mitk::ThreeDnTDICOMSeriesReader
::Condense3DBlocks(SortingBlockList& resultOf3DGrouping)
{
  if (!m_Group3DandT)
  {
    return resultOf3DGrouping; // don't work if nobody asks us to
  }

  SortingBlockList remainingBlocks = resultOf3DGrouping;

  SortingBlockList non3DnTBlocks;
  SortingBlockList true3DnTBlocks;
  std::vector<unsigned int> true3DnTBlocksTimeStepCount;

  // we should describe our need for this tag as needed via a function
  // (however, we currently know that the superclass will always need this tag)
  const DICOMTag tagImagePositionPatient(0x0020, 0x0032);

  while (!remainingBlocks.empty())
  {
    // new block to fill up
    const DICOMDatasetAccessingImageFrameList& firstBlock = remainingBlocks.front();
    DICOMDatasetAccessingImageFrameList current3DnTBlock = firstBlock;
    int current3DnTBlockNumberOfTimeSteps = 1;

    // get block characteristics of first block
    const unsigned int currentBlockNumberOfSlices = firstBlock.size();
    const std::string currentBlockFirstOrigin = firstBlock.front()->GetTagValueAsString( tagImagePositionPatient ).value;
    const std::string currentBlockLastOrigin  =  firstBlock.back()->GetTagValueAsString( tagImagePositionPatient ).value;

    remainingBlocks.erase( remainingBlocks.begin() );

    // compare all other blocks against the first one
    for (auto otherBlockIter = remainingBlocks.begin();
         otherBlockIter != remainingBlocks.cend();
         /*++otherBlockIter*/) // <-- inside loop
    {
      // get block characteristics from first block
      const DICOMDatasetAccessingImageFrameList otherBlock = *otherBlockIter;

      const unsigned int otherBlockNumberOfSlices = otherBlock.size();
      const std::string otherBlockFirstOrigin = otherBlock.front()->GetTagValueAsString( tagImagePositionPatient ).value;
      const std::string otherBlockLastOrigin  =  otherBlock.back()->GetTagValueAsString( tagImagePositionPatient ).value;

      // add matching blocks to current3DnTBlock
      // keep other blocks for later
      if (   otherBlockNumberOfSlices == currentBlockNumberOfSlices
          && otherBlockFirstOrigin == currentBlockFirstOrigin
          && otherBlockLastOrigin == currentBlockLastOrigin
          )
      { // matching block
        ++current3DnTBlockNumberOfTimeSteps;
        current3DnTBlock.insert( current3DnTBlock.end(), otherBlock.begin(), otherBlock.end() ); // append
        // remove this block from remainingBlocks
        otherBlockIter = remainingBlocks.erase(otherBlockIter); // make sure iterator otherBlockIter is valid afterwards
      }
      else
      {
        ++otherBlockIter;
      }
    }

    // in any case, we now now all about the first block of our list ...
    // ... and we wither call it 3D o 3D+t
    if (current3DnTBlockNumberOfTimeSteps > 1)
    {
      true3DnTBlocks.push_back(current3DnTBlock);
      true3DnTBlocksTimeStepCount.push_back(current3DnTBlockNumberOfTimeSteps);
    }
    else
    {
      non3DnTBlocks.push_back(current3DnTBlock);
    }
  }

  // create output for real 3D+t blocks (other outputs will be created by superclass)
  // set 3D+t flag on output block
  this->SetNumberOfOutputs( true3DnTBlocks.size() );
  unsigned int o = 0;
  for (auto blockIter = true3DnTBlocks.cbegin();
       blockIter != true3DnTBlocks.cend();
       ++o, ++blockIter)
  {
    // bad copy&paste code from DICOMITKSeriesGDCMReader, should be handled in a better way
    DICOMDatasetAccessingImageFrameList gdcmFrameInfoList = *blockIter;
    assert(!gdcmFrameInfoList.empty());

    // reverse frames if necessary
    // update tilt information from absolute last sorting
    const DICOMDatasetList datasetList = ConvertToDICOMDatasetList( gdcmFrameInfoList );
    m_NormalDirectionConsistencySorter->SetInput( datasetList );
    m_NormalDirectionConsistencySorter->Sort();
    const DICOMDatasetAccessingImageFrameList sortedGdcmInfoFrameList = ConvertToDICOMDatasetAccessingImageFrameList( m_NormalDirectionConsistencySorter->GetOutput(0) );
    const GantryTiltInformation& tiltInfo = m_NormalDirectionConsistencySorter->GetTiltInformation();

    // set frame list for current block
    const DICOMImageFrameList frameList = ConvertToDICOMImageFrameList( sortedGdcmInfoFrameList );
    assert(!frameList.empty());

    DICOMImageBlockDescriptor block;
    block.SetTagCache( this->GetTagCache() ); // important: this must be before SetImageFrameList(), because SetImageFrameList will trigger reading of lots of interesting tags!
    block.SetAdditionalTagsOfInterest(GetAdditionalTagsOfInterest());
    block.SetTagLookupTableToPropertyFunctor(GetTagLookupTableToPropertyFunctor());
    block.SetImageFrameList( frameList );
    block.SetTiltInformation( tiltInfo );

    block.SetFlag("3D+t", true);
    block.SetIntProperty("timesteps", true3DnTBlocksTimeStepCount[o]);
    MITK_DEBUG << "Found " << true3DnTBlocksTimeStepCount[o] << " timesteps";

    this->SetOutput( o, block );
  }

  return non3DnTBlocks;
}