Skip to content

biotrump/pfft

 
 

Repository files navigation

PFFT - Massively Parallel FFT based on FFTW3

Overview
--------
PFFT is a software library for computing massively parallel, fast Fourier transformations
on distributed memory architectures. PFFT can be understood as a generalization of FFTW-MPI
to multidimensional data decomposition.
The library is written in C and MPI. A Fortran interface is also available.
Support for hybrid parallization based on OpenMP and MPI is under development.

Install
-------

At first, you need an install of FFTW-3.3 with enabled MPI support. 
We highly recommend to install the latest release of FFTW since the MPI code got several
bugfixes in the last releases. Since some fixes are still pending until release FFTW-3.3.5.
we offer some helpful scripts for installing FFTW-3.3.4 together with two patches
(one bugfix and one performance improvement) at our sofware page
  https://www-user.tu-chemnitz.de/~mpip/software.php#scripts

The install of PFFT follows the typical steps
  ./bootstrap.sh
  ./configure
  make
  make install
Optionally, a bunch of test programs can be built with
  make check

The bootstrap step can be skipped if you delivered a PFFT tarball,
i.e., the file configure was already generated.
Make sure that configure can find a working install of FFTW-3.3 with MPI support,
i.e., set 
  CPPFLAGS=$PATHTOFFTW/include
and
  LDFLAGS=$PATHTOFFTW/lib64 or LDFLAGS=$PATHTOFFTW/lib
depending on your system architecture.

Documentation
-------------

PFFT tarballs include a detailed user guide at 
  doc/manual.pdf
If you have cloned the PFFT repository, the user manual is automatically built during 'make'.
Of course this requires a working LaTeX enviroment.
Alternatively, you can download a recent version of the user manual at
  http://www.tu-chemnitz.de/~mpip/software.php.en

Note that using PFFT is very similar to FFTW. The interface is as close to the fftw_mpi
interface as possible. Therefore, it is a good start to read FFTW manual:
  http://www.fftw.org/fftw3_doc
At least you should understand how FFTW deals with distributed memory FFTs:
  http://www.fftw.org/fftw3_doc/Distributed_002dmemory-FFTW-with-MPI.html#Distributed_002dmemory-FFTW-with-MPI
Next, you can have a look at the test programs in directory 'tests' to learn the details of the PFFT interface.

For installation instructions, you can also refer to the file INSTALL
in this directory.

For an theoretical introduction, please read the paper 
  ''PFFT - An Extension of FFTW to Massively Parallel Architectures''
available at http://www.tu-chemnitz.de/mpip/publikationen.php.en
This is the most current general paper, and the one that we recommend if you wish 
to cite PFFT.

Python interface
----------------

A python interface is available at a distinct repository
  https://github.com/rainwoodman/pfft-python
Many thanks to Yu Feng for his great work.


Directory structure
-------------------

aclocal.m4		Macros for configure script
api (dir)               Source code for user interface
AUTHORS			Information about the authors of PFFT
bootstrap.sh		Bootstrap shell script that call Autoconf and friends
                        in order to generate configure
build-aux (dir)         Used by configure script
ChangeLog		A short version history
config.h.in             Used by configure script
configure		Configure script build from configure.ac by bootstrap.sh
configure.in		Autoconf configure script template
CONVENTIONS             Makro naming conventions for developers
COPYING			Information about redistributing PFFT
doc (dir)		User and developer documentation
fconfig.h.in            Used by configure script (Fortran definitions)
gcell (dir)             Source code for ghost cell support
include (dir)		Header files
INSTALL			Installation instructions
kernel (dir)		Source code for core library routines
m4 (dir)                Contains macros for configure script
Makefile.am		Automake Makefile template
Makefile.in		Makefile template generated from Makefile.am,
                        processed by configure script
NEWS			New and noteworthy
pfft.pc.in              Template for PFFT package information
README			This file
scripts (dir)           A collection of useful script files
tests (dir)             Simples examples for using PFFT routines
TODO			Current work to be done
util (dir)		Source code for auxilliary routines

Feedback
--------
Your comments are welcome! This is the first version of the library and may
not be as robust or well documented as it should be. Please keep track of bugs
or missing/confusing instructions and report them to

  Michael Pippig <michael.pippig@mathematik.tu-chemnitz.de>
  TU Chemnitz, Fakultaet fuer Mathematik
  Reichenhainer Str. 39
  09107 Chemnitz, GERMANY

If you find PFFT useful, we would be delighted to hear about what application
you are using PFFT for!
 

About

Parallel fast Fourier transforms

Resources

License

Stars

Watchers

Forks

Packages

No packages published

Languages

  • C 84.5%
  • Fortran 10.8%
  • Shell 3.2%
  • Perl 1.5%