/
level.c
323 lines (265 loc) · 8.02 KB
/
level.c
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
#include "level.h"
#include "naututil.h"
#include <string.h>
//Hash set implementation/callbacks
static unsigned long nauty_hash(void *elem)
{
graph_info *graph = elem;
int m = (graph->n + WORDSIZE - 1) / WORDSIZE;
return (unsigned long) hash(graph->gcan, m * graph->n, 15);
}
static bool nauty_compare(void *elem1, void *elem2)
{
graph_info *graph1 = elem1, *graph2 = elem2;
if (graph1->n != graph2->n)
return false;
graph *g1 = graph1->gcan, *g2 = graph2->gcan;
int m = (graph1->n + WORDSIZE - 1) / WORDSIZE;
return !memcmp(g1, g2, graph1->n * m * sizeof(setword));
}
static void nauty_delete(void *elem)
{
}
//Priority queue implementation/callbacks
static bool graph_compare_gt(void *elem1, void *elem2)
{
graph_info *graph1 = elem1, *graph2 = elem2;
if(graph1->sum_of_distances > graph2->sum_of_distances)
return true;
else if(graph1->sum_of_distances < graph2->sum_of_distances)
return false;
return graph1->diameter > graph2->diameter;
}
static void graph_delete(void *elem)
{
graph_info *graph = elem;
graph_info_destroy(graph);
}
level *level_create(unsigned n, unsigned p, unsigned max_k)
{
//make sure max_k is sane
if(max_k < 2 || max_k > (n - 1))
return NULL;
level *ret = malloc(sizeof(level));
ret->n = n;
ret->p = p;
ret->max_k = max_k;
ret->min_m = n - 1;
ret->num_m = (n * max_k / 2) - ret->min_m + 1;
ret->sets = malloc(ret->num_m * sizeof(hash_set*));
ret->queues = malloc(ret->num_m * sizeof(priority_queue*));
for(int i = 0; i < ret->num_m; i++)
{
ret->sets[i] = hash_set_create(P * 3 / 2, nauty_hash, nauty_compare,
nauty_delete);
ret->queues[i] = priority_queue_create(graph_compare_gt,
graph_delete);
}
return ret;
}
void level_delete(level *my_level)
{
for(int i = 0; i < my_level->num_m; i++)
hash_set_delete(my_level->sets[i]);
free(my_level->sets);
for(int i = 0; i < my_level->num_m; i++)
priority_queue_delete(my_level->queues[i]);
free(my_level->queues);
free(my_level);
}
void level_empty_and_print(level *my_level)
{
printf("For n = %u\n", my_level->n);
for(int i = 0; i < my_level->num_m; i++)
{
printf("m = %u:\n", i + my_level->min_m);
while(priority_queue_num_elems(my_level->queues[i]))
{
graph_info *g = priority_queue_pull(my_level->queues[i]);
print_graph(*g);
graph_info_destroy(g);
}
}
}
bool add_graph_to_level(graph_info *new_graph, level *my_level)
{
unsigned i = new_graph->m - my_level->min_m;
if(priority_queue_num_elems(my_level->queues[i]) >= my_level->p &&
graph_compare_gt(new_graph,
priority_queue_peek(my_level->queues[i])))
return false;
if(!new_graph->gcan)
{
int m = (new_graph->n + WORDSIZE - 1) / WORDSIZE;
DEFAULTOPTIONS_GRAPH(options);
statsblk stats;
setword workspace[m * 50];
int lab[new_graph->n], ptn[new_graph->n], orbits[new_graph->n];
new_graph->gcan = malloc(new_graph->n * m * sizeof(setword));
options.getcanon = true;
nauty(new_graph->nauty_graph, lab, ptn, NULL, orbits,
&options, &stats, workspace, 50 * m, m, new_graph->n, new_graph->gcan);
}
if(!hash_set_add(my_level->sets[i], new_graph))
{
//this graph already exists
return false;
}
_add_graph_to_level(new_graph, my_level);
return true;
}
//Doesn't check/add to hash set
//Used for the first level created by geng
void _add_graph_to_level(graph_info *new_graph, level *my_level)
{
unsigned i = new_graph->m - my_level->min_m;
priority_queue_push(my_level->queues[i], new_graph);
if(priority_queue_num_elems(my_level->queues[i]) > my_level->p)
{
graph_info *g = priority_queue_pull(my_level->queues[i]);
if(g->gcan)
hash_set_remove(my_level->sets[i], g);
graph_info_destroy(g);
}
}
static void init_extended(graph_info input, graph_info *extended)
{
extended->n = (input.n+1);
int m = (input.n + WORDSIZE - 1) / WORDSIZE;
int extended_m = (input.n + WORDSIZE)/WORDSIZE;
extended->nauty_graph = malloc(extended->n * extended_m * sizeof(setword));
for(int i = 0; i < input.n; i++)
{
for(int j = 0; j < m; j++)
extended->nauty_graph[i*extended_m + j] = input.nauty_graph[i*m + j];
if(extended_m > m)
extended->nauty_graph[i*extended_m + m] = 0;
}
for(int i = 0; i < extended_m; i++)
extended->nauty_graph[input.n*extended_m + i] = 0;
extended->gcan = NULL;
extended->distances = malloc(extended->n*extended->n*sizeof(*extended->distances));
for(int i = 0; i < input.n; i++)
for(int j = 0; j < input.n; j++)
extended->distances[(extended->n)*i + j] = input.distances[(input.n)*i + j];
for(int i = 0; i < extended->n - 1; i++)
extended->distances[(extended->n)*i+extended->n-1] =
extended->distances[(extended->n)*(extended->n-1)+i] = GRAPH_INFINITY;
extended->distances[extended->n*extended->n - 1] = 0;
extended->k = (int*) malloc(extended->n*sizeof(int));
for(int i = 0; i < input.n; i++)
extended->k[i] = input.k[i];
extended->k[input.n] = 0;
extended->m = input.m;
extended->max_k = input.max_k;
}
static void destroy_extended(graph_info extended)
{
free(extended.distances);
free(extended.nauty_graph);
free(extended.k);
}
static void add_edges(graph_info *g, unsigned start, int extended_m,
level *my_level)
{
//setup m and k[n] for the children
//note that these values will not change b/w each child
//of this node in the search tree
g->m++;
g->k[g->n - 1]++;
unsigned old_max_k = g->max_k;
if(g->k[g->n - 1] > g->max_k)
g->max_k = g->k[g->n - 1];
//if the child has a node of degree greater than MAX_K,
//don't search it
if(g->k[g->n - 1] <= my_level->max_k)
{
for(unsigned i = start; i < g->n - 1; i++)
{
g->k[i]++;
//same as comment above
if(g->k[i] <= my_level->max_k)
{
unsigned old_max_k = g->max_k;
if(g->k[i] > g->max_k)
g->max_k = g->k[i];
g->distances[g->n*i + (g->n-1)] = g->distances[g->n*(g->n-1) + i] = 1;
ADDELEMENT(GRAPHROW(g->nauty_graph, i, extended_m), g->n-1);
ADDELEMENT(GRAPHROW(g->nauty_graph, g->n-1, extended_m), i);
add_edges(g, i + 1, extended_m, my_level);
DELELEMENT(GRAPHROW(g->nauty_graph, i, extended_m), g->n-1);
DELELEMENT(GRAPHROW(g->nauty_graph, g->n-1, extended_m), i);
g->distances[g->n*i + (g->n-1)] = g->distances[g->n*(g->n-1) + i] = GRAPH_INFINITY;
g->max_k = old_max_k;
}
g->k[i]--;
}
}
//tear down values we created in the beginning
g->max_k = old_max_k;
g->m--;
g->k[g->n - 1]--;
if(g->k[g->n - 1] > 0)
{
graph_info *temporary = new_graph_info(*g);
fill_dist_matrix(*temporary);
temporary->diameter = calc_diameter(*temporary);
temporary->sum_of_distances = calc_sum(*temporary);
if(!add_graph_to_level(temporary, my_level))
graph_info_destroy(temporary);
}
}
void extend_graph_and_add_to_level(graph_info input, level *new_level)
{
graph_info extended;
init_extended(input, &extended);
add_edges(&extended, 0, (extended.n + WORDSIZE - 1) / WORDSIZE, new_level);
destroy_extended(extended);
}
void level_extend(level *old, level *new)
{
for(int i = 0; i < old->num_m; i++)
{
while(priority_queue_num_elems(old->queues[i]))
{
graph_info *g = priority_queue_pull(old->queues[i]);
extend_graph_and_add_to_level(*g, new);
graph_info_destroy(g);
}
}
}
void test_extend_graph(void)
{
graph_info g;
int distances [25] = {
0, 1, 1, 2, 2,
1, 0, 2, 1, 3,
1, 2, 0, 3, 1,
2, 1, 3, 0, 4,
2, 3, 1, 4, 0,
};
int m = (4 + WORDSIZE) / WORDSIZE;
graph nauty_graph[m * 5];
for (int i = 0; i < m * 5; i++)
nauty_graph[i] = 0;
ADDELEMENT(GRAPHROW(nauty_graph, 0, m), 1);
ADDELEMENT(GRAPHROW(nauty_graph, 0, m), 2);
ADDELEMENT(GRAPHROW(nauty_graph, 1, m), 0);
ADDELEMENT(GRAPHROW(nauty_graph, 1, m), 3);
ADDELEMENT(GRAPHROW(nauty_graph, 2, m), 0);
ADDELEMENT(GRAPHROW(nauty_graph, 2, m), 4);
ADDELEMENT(GRAPHROW(nauty_graph, 3, m), 1);
ADDELEMENT(GRAPHROW(nauty_graph, 4, m), 2);
g.distances = distances;
g.nauty_graph = nauty_graph;
g.n = 5;
int g_k[5] = {2, 2, 2, 1 ,1};
g.k = g_k;
g.m = 4;
g.max_k = 2;
print_graph(g);
level *my_level = level_create(6, 1000, 3);
extend_graph_and_add_to_level(g, my_level);
level_empty_and_print(my_level);
level_delete(my_level);
}