You can tell this project's CMake to use a local Eigen build with: cmake . -DEIGEN3_INCLUDE_DIR=/home/doriad/src/eigen-3.2.1/

You can tell this project's CMake to use a local ITK build with: cmake . -DITK_DIR=/home/doriad/build/ITK_devel

You can tell this project's CMake to use a local VTK build with: cmake . -DVTK_DIR=/home/doriad/build/VTK