Search large texts using the FM-index algorithm

License: GPLv2 http://www.gnu.org/licenses/gpl-2.0.html

Python C-API bindings for fmindexV2 which is originally available at

http://www.di.unipi.it/~ferragin//Libraries/fmindexV2/index.html

due to the need to modify the makefile (for fPIC for Linux) and ease of distribution, the source is included in the distro.

License is GPLv2 due to fmindexV2 and ds_ssort. see the folders fmindexV2 and subfolder ds_ssort for that copyright info. Also the README.txt in fmindexV2 has more info.

bindings are Copyright (C) 2014 Nick Conway

see tests for usage.

text input below SMALLFILESIZE of 51201 bytes (50 kB) and SMALLSMALLFILESIZE 1025 bytes 1 kB uses the Boyer-Moore algorithm for search and SMALLSMALLFILESIZE doesn't compress the text

from fmindex import FMindex

my_fmi = FMindex(from)