nh13/SRMA
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SRMA - short read micro re-aligner There are two version of SRMA currently: 1. A C-version found in the c-code sub-directory. 2. A Java version found in the java sub-directory. === To Install === ==== Java ==== 1. Move into the java sub-directory. 2. Download sam-1.39.jar and picard-1.39.jar and place them in a folder called lib. 3. Run: ant jar ==== C-code ==== 1. Move into the c-code sub-directory. 2. Run: sh autogen.sh && ./configure && make See the README in the sub-directory for more help. === For more help === see http://srma.sf.net