This is a biology python package I used in my working. I will translate some algorithms from other language into python. I will try to make the program fast and easy to use. I mainly working on protein sequence analysis.
Now we have v1.1.2, welcome to download and tell me your feeling.
The package is dependent on numpy and prody.
Now, I have
- MI
- MIp
- OMES
- SCA
- DI
- PSICOV
- DICOV
- APC
- BND
- PPV (for PSICOV)
- Sequence shuffle
We also have some functions for different file formats.
- PDB (which could support the .tar.gz bundle PDB parser and writer.)
- Fasta
- Numpy Matrix
- MRC (support .mrc.gz parser and writer.)
I probably will post some examples in the furture.
If you are interested in developing, please e-mail me and I will be happy to work together with you.
If you think some algorithms should be added into this package, you could also e-mail me.
- wzmao (Only me now)
See the LICENSE file for license rights and limitations (MIT).