• Be fast
• Scale well
• Depend only on open-source libraries
  • Eigen (matrix manipulation)
  • GSL (optimization)
• Be easily interfaceable
  • R module
  • IMP module

In what follows, the repository is expected to be in ./src and the library will be built in ./build

To build without comments:

cd build
cmake ../src -G Ninja -DCMAKE_BUILD_TYPE=Release
ninja

To build with logging

cd build
cmake ../src -G Ninja -DCMAKE_BUILD_TYPE=Debug
ninja

To run test for MVN, in build folder

./TestMVN

Trivial benchmark for MVN

./MVNBench ../data/toy.dat ../data/fitting_protocol2.dat

Simple benchmark for MVN

./MVNBench ../data/simple.dat ../data/fitting_protocol.dat