void MapAlignmentTransformer::applyToBaseFeature_(BaseFeature & feature,
const TransformationDescription & trafo)
{
// transform feature position:
DoubleReal rt = feature.getRT();
feature.setRT(trafo.apply(rt));
// adapt RT values of annotated peptides:
if (!feature.getPeptideIdentifications().empty())
{
transformSinglePeptideIdentification(feature.getPeptideIdentifications(),
trafo);
}
}
void MapAlignmentTransformer::applyToBaseFeature_(
BaseFeature& feature, const TransformationDescription& trafo,
bool store_original_rt)
{
// transform feature position:
double rt = feature.getRT();
if (store_original_rt) storeOriginalRT_(feature, rt);
feature.setRT(trafo.apply(rt));
// adapt RT values of annotated peptides:
if (!feature.getPeptideIdentifications().empty())
{
transformRetentionTimes(feature.getPeptideIdentifications(), trafo,
store_original_rt);
}
}