int
main(int argc, char *argv[]) {
char *me, *errS, *outS;
hestOpt *hopt=NULL;
hestParm *hparm;
airArray *mop;
Nrrd *nin, *nout;
NrrdKernelSpec *ksp;
mossSampler *msp;
double mat[6], **matList, *origInfo, origMat[6], origInvMat[6], ox, oy,
min[2], max[2];
int d, bound, ax0, size[2];
unsigned int matListLen, _bkgLen, i, avgNum;
float *bkg, *_bkg, scale[4];
me = argv[0];
mop = airMopNew();
hparm = hestParmNew();
airMopAdd(mop, hparm, (airMopper)hestParmFree, airMopAlways);
hparm->elideSingleEnumType = AIR_TRUE;
hparm->elideSingleOtherType = AIR_TRUE;
hparm->elideSingleOtherDefault = AIR_FALSE;
hparm->elideMultipleNonExistFloatDefault = AIR_TRUE;
hparm->respFileEnable = AIR_TRUE;
hestOptAdd(&hopt, "i", "image", airTypeOther, 1, 1, &nin, "-",
"input image", NULL, NULL, nrrdHestNrrd);
hestOptAdd(&hopt, "0", "origin", airTypeOther, 1, 1, &origInfo, "p:0,0",
"where to location (0,0) prior to applying transforms.\n "
"\b\bo \"u:<float>,<float>\" locate origin in a unit box "
"[0,1]x[0,1] which covers the original image\n "
"\b\bo \"p:<float>,<float>\" locate origin at a particular "
"pixel location, in the index space of the image",
NULL, NULL, mossHestOrigin);
hestOptAdd(&hopt, "t", "xform0", airTypeOther, 1, -1, &matList, NULL,
"transform(s) to apply to image. Transforms "
"are applied in the order in which they appear.\n "
"\b\bo \"identity\": no geometric transform, just resampling\n "
"\b\bo \"translate:x,y\": shift image by vector (x,y), as "
"measured in pixels\n "
"\b\bo \"rotate:ang\": rotate CCW by ang degrees\n "
"\b\bo \"scale:xs,ys\": scale by xs in X, and ys in Y\n "
"\b\bo \"shear:fix,amnt\": shear by amnt, keeping fixed "
"the pixels along a direction <fix> degrees from the X axis\n "
"\b\bo \"flip:ang\": flip along axis an angle <ang> degrees from "
"the X axis\n "
"\b\bo \"a,b,tx,c,d,ty\": specify the transform explicitly "
"in row-major order (opposite of PostScript) ",
&matListLen, NULL, mossHestTransform);
hestOptAdd(&hopt, "k", "kernel", airTypeOther, 1, 1, &ksp,
"cubic:0,0.5", "reconstruction kernel",
NULL, NULL, nrrdHestKernelSpec);
hestOptAdd(&hopt, "min", "xMin yMin", airTypeDouble, 2, 2, min, "nan nan",
"lower bounding corner of output image. Default (by not "
"using this option) is the lower corner of input image. ");
hestOptAdd(&hopt, "max", "xMax yMax", airTypeDouble, 2, 2, max, "nan nan",
"upper bounding corner of output image. Default (by not "
"using this option) is the upper corner of input image. ");
hestOptAdd(&hopt, "b", "boundary", airTypeEnum, 1, 1, &bound, "bleed",
"what to do when sampling outside original image.\n "
"\b\bo \"bleed\": copy values at image border outward\n "
"\b\bo \"wrap\": do wrap-around on image locations\n "
"\b\bo \"pad\": use a given background value (via \"-bg\")",
NULL, nrrdBoundary);
hestOptAdd(&hopt, "bg", "bg0 bg1", airTypeFloat, 1, -1, &_bkg, "nan",
"background color to use with boundary behavior \"pad\". "
"Defaults to all zeroes.",
&_bkgLen);
hestOptAdd(&hopt, "s", "xSize ySize", airTypeOther, 2, 2, scale, "x1 x1",
"For each axis, information about how many samples in output:\n "
"\b\bo \"x<float>\": number of output samples is some scaling of "
" the number input of samples; multiplied by <float>\n "
"\b\bo \"<int>\": specify exact number of samples",
NULL, NULL, &unrrduHestScaleCB);
hestOptAdd(&hopt, "a", "avg #", airTypeUInt, 1, 1, &avgNum, "0",
"number of averages (if there there is only one "
"rotation)");
hestOptAdd(&hopt, "o", "filename", airTypeString, 1, 1, &outS, "-",
"file to write output nrrd to");
hestParseOrDie(hopt, argc-1, argv+1, hparm,
me, ilkInfo, AIR_TRUE, AIR_TRUE, AIR_TRUE);
airMopAdd(mop, hopt, (airMopper)hestOptFree, airMopAlways);
airMopAdd(mop, hopt, (airMopper)hestParseFree, airMopAlways);
nout = nrrdNew();
airMopAdd(mop, nout, (airMopper)nrrdNuke, airMopAlways);
msp = mossSamplerNew();
airMopAdd(mop, msp, (airMopper)mossSamplerNix, airMopAlways);
msp->boundary = bound;
if (mossSamplerKernelSet(msp, ksp->kernel, ksp->parm)) {
fprintf(stderr, "%s: trouble with sampler:\n%s\n",
me, errS = biffGetDone(MOSS)); free(errS);
airMopError(mop); return 1;
}
if (nrrdBoundaryPad == bound) {
if (_bkgLen != MOSS_NCOL(nin)) {
fprintf(stderr, "%s: got %d background colors, image has "
_AIR_SIZE_T_CNV " colors\n",
me, _bkgLen, MOSS_NCOL(nin));
airMopError(mop); return 1;
} else {
bkg = _bkg;
}
} else {
/* maybe warn user if they gave a background that won't be used? */
/* No- because hest is stupid, and right now we always parse the
single (default) "nan" for this argument! */
bkg = NULL;
}
ax0 = MOSS_AXIS0(nin);
if (!( AIR_EXISTS(nin->axis[ax0+0].min)
&& AIR_EXISTS(nin->axis[ax0+0].max))) {
nrrdAxisInfoMinMaxSet(nin, ax0+0, mossDefCenter);
}
if (!( AIR_EXISTS(nin->axis[ax0+1].min)
&& AIR_EXISTS(nin->axis[ax0+1].max))) {
nrrdAxisInfoMinMaxSet(nin, ax0+1, mossDefCenter);
}
min[0] = AIR_EXISTS(min[0]) ? min[0] : nin->axis[ax0+0].min;
max[0] = AIR_EXISTS(max[0]) ? max[0] : nin->axis[ax0+0].max;
min[1] = AIR_EXISTS(min[1]) ? min[1] : nin->axis[ax0+1].min;
max[1] = AIR_EXISTS(max[1]) ? max[1] : nin->axis[ax0+1].max;
for (d=0; d<2; d++) {
switch((int)scale[0 + 2*d]) {
case 0:
/* same number of samples as input */
size[d] = nin->axis[ax0+d].size;
break;
case 1:
/* scaling of input # samples */
size[d] = (int)(scale[1 + 2*d]*nin->axis[ax0+d].size);
break;
case 2:
/* explicit # of samples */
size[d] = (int)(scale[1 + 2*d]);
break;
}
}
/* find origin-based pre- and post- translate */
if (0 == origInfo[0]) {
/* absolute pixel position */
mossMatTranslateSet(origMat, -origInfo[1], -origInfo[2]);
} else {
/* in unit box [0,1]x[0,1] */
ox = AIR_AFFINE(0.0, origInfo[1], 1.0,
nin->axis[ax0+0].min, nin->axis[ax0+0].max);
oy = AIR_AFFINE(0.0, origInfo[2], 1.0,
nin->axis[ax0+1].min, nin->axis[ax0+1].max);
mossMatTranslateSet(origMat, -ox, -oy);
}
mossMatInvert(origInvMat, origMat);
/* form complete transform */
mossMatIdentitySet(mat);
mossMatLeftMultiply(mat, origMat);
for (i=0; i<matListLen; i++) {
mossMatLeftMultiply(mat, matList[i]);
}
mossMatLeftMultiply(mat, origInvMat);
if (!AIR_EXISTS(nin->axis[ax0+0].min) || !AIR_EXISTS(nin->axis[ax0+0].max)) {
nrrdAxisInfoMinMaxSet(nin, ax0+0, mossDefCenter);
}
if (!AIR_EXISTS(nin->axis[ax0+1].min) || !AIR_EXISTS(nin->axis[ax0+1].max)) {
nrrdAxisInfoMinMaxSet(nin, ax0+1, mossDefCenter);
}
if (avgNum > 1) {
unsigned int ai;
double angleMax, angle, mrot[6];
Nrrd *ntmp, *nacc;
NrrdIter *itA, *itB;
int E;
ntmp = nrrdNew();
airMopAdd(mop, ntmp, (airMopper)nrrdNuke, airMopAlways);
nacc = nrrdNew();
airMopAdd(mop, nacc, (airMopper)nrrdNuke, airMopAlways);
itA = nrrdIterNew();
airMopAdd(mop, itA, (airMopper)nrrdIterNix, airMopAlways);
itB = nrrdIterNew();
airMopAdd(mop, itB, (airMopper)nrrdIterNix, airMopAlways);
E = 0;
angleMax = atan2(mat[3], mat[0]);
fprintf(stderr, "%s: %u angles ", me, avgNum);
for (ai=0; ai<avgNum; ai++) {
fprintf(stderr, "."); fflush(stderr);
angle = (180/AIR_PI)*AIR_AFFINE(0, ai, avgNum-1, angleMax, -angleMax);
mossMatIdentitySet(mat);
mossMatLeftMultiply(mat, origMat);
mossMatRotateSet(mrot, angle);
mossMatLeftMultiply(mat, mrot);
mossMatLeftMultiply(mat, origInvMat);
if (mossLinearTransform(ntmp, nin, bkg,
mat, msp,
min[0], max[0], min[1], max[1],
size[0], size[1])) {
fprintf(stderr, "%s: problem doing transform:\n%s\n",
me, errS = biffGetDone(MOSS)); free(errS);
airMopError(mop); return 1;
}
if (!ai) {
if (!E) E |= nrrdCopy(nacc, ntmp);
} else {
if (!E) E |= nrrdArithBinaryOp(nacc, nrrdBinaryOpAdd, nacc, ntmp);
}
if (E) {
break;
}
}
fprintf(stderr, "\n");
nrrdIterSetNrrd(itA, nacc);
nrrdIterSetValue(itB, avgNum);
if (!E) E |= nrrdArithIterBinaryOp(nout, nrrdBinaryOpDivide,
itA, itB);
if (E) {
fprintf(stderr, "%s: problem making output:\n%s\n",
me, errS = biffGetDone(NRRD)); free(errS);
airMopError(mop); return 1;
}
} else {
if (mossLinearTransform(nout, nin, bkg,
mat, msp,
min[0], max[0], min[1], max[1],
size[0], size[1])) {
fprintf(stderr, "%s: problem doing transform:\n%s\n",
me, errS = biffGetDone(MOSS)); free(errS);
airMopError(mop); return 1;
}
}
if (nrrdSave(outS, nout, NULL)) {
fprintf(stderr, "%s: problem saving output:\n%s\n",
me, errS = biffGetDone(NRRD)); free(errS);
airMopError(mop); return 1;
}
airMopOkay(mop);
exit(0);
}
int
unrrdu_2opMain(int argc, char **argv, char *me, hestParm *hparm) {
hestOpt *opt = NULL;
char *out, *err, *seedS;
NrrdIter *in1, *in2;
Nrrd *nout, *ntmp=NULL;
int op, type, E, pret;
airArray *mop;
unsigned int seed;
hestOptAdd(&opt, NULL, "operator", airTypeEnum, 1, 1, &op, NULL,
"Binary operator. Possibilities include:\n "
"\b\bo \"+\", \"-\", \"x\", \"/\": "
"add, subtract, multiply, divide\n "
"\b\bo \"^\": exponentiation (pow)\n "
"\b\bo \"spow\": signed exponentiation: sgn(x)pow(abs(x),p)\n "
"\b\bo \"%\": integer modulo\n "
"\b\bo \"fmod\": same as fmod() in C\n "
"\b\bo \"atan2\": same as atan2() in C\n "
"\b\bo \"min\", \"max\": minimum, maximum\n "
"\b\bo \"lt\", \"lte\", \"gt\", \"gte\": same as C's <, <=, >, <=\n "
"\b\bo \"eq\", \"neq\": same as C's == and !=\n "
"\b\bo \"comp\": -1, 0, or 1 if 1st value is less than, "
"equal to, or greater than 2nd value\n "
"\b\bo \"if\": if 1st value is non-zero, use it, "
"else use 2nd value\n "
"\b\bo \"exists\": if 1st value exists, use it, "
"else use 2nd value\n "
"\b\bo \"nrand\": scale unit-stdv Gaussian noise by 2nd value "
"and add to first value",
NULL, nrrdBinaryOp);
hestOptAdd(&opt, NULL, "in1", airTypeOther, 1, 1, &in1, NULL,
"First input. Can be a single value or a nrrd.",
NULL, NULL, nrrdHestIter);
hestOptAdd(&opt, NULL, "in2", airTypeOther, 1, 1, &in2, NULL,
"Second input. Can be a single value or a nrrd.",
NULL, NULL, nrrdHestIter);
hestOptAdd(&opt, "s,seed", "seed", airTypeString, 1, 1, &seedS, "",
"seed value for RNG for nrand, so that you "
"can get repeatable results between runs, or, "
"by not using this option, the RNG seeding will be "
"based on the current time");
hestOptAdd(&opt, "t,type", "type", airTypeOther, 1, 1, &type, "default",
"type to convert all INPUT nrrds to, prior to "
"doing operation, useful for doing, for instance, the difference "
"between two unsigned char nrrds. This will also determine "
"output type. By default (not using this option), the types of "
"the input nrrds are left unchanged.",
NULL, NULL, &unrrduHestMaybeTypeCB);
OPT_ADD_NOUT(out, "output nrrd");
mop = airMopNew();
airMopAdd(mop, opt, (airMopper)hestOptFree, airMopAlways);
USAGE(_unrrdu_2opInfoL);
PARSE();
airMopAdd(mop, opt, (airMopper)hestParseFree, airMopAlways);
nout = nrrdNew();
airMopAdd(mop, nout, (airMopper)nrrdNuke, airMopAlways);
/*
fprintf(stderr, "%s: op = %d\n", me, op);
fprintf(stderr, "%s: in1->left = %d, in2->left = %d\n", me,
(int)(in1->left), (int)(in2->left));
*/
if (nrrdTypeDefault != type) {
/* they wanted to convert nrrds to some other type first */
E = 0;
if (in1->ownNrrd) {
if (!E) E |= nrrdConvert(ntmp=nrrdNew(), in1->ownNrrd, type);
if (!E) nrrdIterSetOwnNrrd(in1, ntmp);
}
if (in2->ownNrrd) {
if (!E) E |= nrrdConvert(ntmp=nrrdNew(), in2->ownNrrd, type);
if (!E) nrrdIterSetOwnNrrd(in2, ntmp);
}
if (E) {
airMopAdd(mop, err = biffGetDone(NRRD), airFree, airMopAlways);
fprintf(stderr, "%s: error converting input nrrd(s):\n%s", me, err);
airMopError(mop);
return 1;
}
/* this will still leave a nrrd in the NrrdIter for nrrdIterNix()
(called by hestParseFree() called be airMopOkay()) to clear up */
}
if (nrrdBinaryOpNormalRandScaleAdd == op) {
if (airStrlen(seedS)) {
if (1 != sscanf(seedS, "%u", &seed)) {
fprintf(stderr, "%s: couldn't parse seed \"%s\" as uint\n", me, seedS);
airMopError(mop);
return 1;
} else {
airSrandMT(seed);
}
} else {
/* got no request for specific seed */
airSrandMT(AIR_CAST(unsigned int, airTime()));
}
}
if (nrrdArithIterBinaryOp(nout, op, in1, in2)) {
airMopAdd(mop, err = biffGetDone(NRRD), airFree, airMopAlways);
fprintf(stderr, "%s: error doing binary operation:\n%s", me, err);
airMopError(mop);
return 1;
}
SAVE(out, nout, NULL);
airMopOkay(mop);
return 0;
}