GitHub - ilahiri/Motion-correction: Scripts for aligning direct electron detector movies

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
lm-bfgs		lm-bfgs
motioncorr_v2.1		motioncorr_v2.1
README.txt		README.txt
check_available_CPU_memory.csh		check_available_CPU_memory.csh
check_available_GPU_memory.csh		check_available_GPU_memory.csh
copy_files_to_hardDrive_waitingLoop.py		copy_files_to_hardDrive_waitingLoop.py
mrc_to_mrcs.py		mrc_to_mrcs.py
runMotionCorr.py		runMotionCorr.py

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#Motion correction

Python scripts for using 'dosefgpu_driftcorr' alignment procedure for direct electron
detector movies.

##Software dependencies

You must have a GPU processor installed on your workstation with at least 4 GB of GPU memory (e.g. NVIDIA Tesla K10).

CUDA-5.0 libraries must be installed on the GPU and be placed into your path before you can execute this program:

   PATH: /usr/local/cuda-5.0/bin
   LD_LIBRARY_PATH: /usr/local/cuda-5.0/lib64

##runMotionCorr.py

This is a python wrapper script that will run this motion correction software.