RIVALS: Running Intervals
=========================

To compile:

You will need to have CMake installed: http://www.cmake.org/

Type "cmake ." in this directory (assuming cmake is installed), and then run "make"

To run:
Go to the Demo director and type ./rivalsDemo.  You should get the following output

Importing Files...

Example 1:
Saved to gff.bed

Example 2:
chr8	28510032	28510057			-
chr8	28591419	28591444			-
chr8	28606132	28606157			+
chr8	28943188	28943213			+
chr8	29142905	29142930			+
chr8	29333825	29333850			-
chr8	29415138	29415163			+
chr8	29991440	29991465			+
chr8	30071307	30071332			+
chr8	30134056	30134081			-
chr8	30427454	30427479			+
chr8	31173619	31173644			+

Example 3:
Saved to output.riv and output.map
chr8	28510032	28510057			-
chr8	28591419	28591444			-
chr8	28606132	28606157			-
chr8	28943188	28943213			-
chr8	29142905	29142930			-
chr8	29333825	29333850			-
chr8	29415138	29415163			-
chr8	29991440	29991465			-
chr8	30071307	30071332			-
chr8	30134056	30134081			-
chr8	30427454	30427479			-
chr8	31173619	31173644			-

Example 4:
Method 1:
chrX	100165880	100165898			-
chrX	100165899	100165919			-
chrX	100165920	100166138			-
chrX	100167265	100167543			-
chrX	100167575	100167787			-
chrX	100167969	100168052			-
Method 2:
chrX	100165880	100165898			-
chrX	100165899	100165919			-
chrX	100165920	100166138			-
chrX	100167265	100167543			-
chrX	100167575	100167787			-
chrX	100167969	100168052			-

Example 5:
chrX	100165880	100165898		2	.