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HPG Aligner is high-performance and highly sensitive NGS aligner. Both DNA and RNA-seq modes are implemented
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opencb-hpg/hpg-aligner
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Welcome to OpenCB HPG Aligner NGS 'bioinfo-libs' is a C library with bioinformatic data format parsers and BWT and SW aligners. It's part of HPG project. COMPONENTS This library consist of: * several data format parsers: gff, bam, vcf, bed, ... * HPC implementation of two widely used sequence aligners: Burrows-Whheler Transform (BWT) and Smith-Waterman (SW) CONTACT You can contact any of the following developers: * Joaquin Tarraga (jtarraga@cipf.es) * Hector Martinez * Ignacio Medina (imedina@cipf.es) BUILDING Scons is used as building system, to build the library download 'next' branch (for the most recent library) and execute: $ scons GCC4.4+ is the only requirement. DOCUMENTATION You can find more info about HPG project and bioinfo-libs at: http://wiki.opencb.org/projects/hpg/doku.php
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HPG Aligner is high-performance and highly sensitive NGS aligner. Both DNA and RNA-seq modes are implemented
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