/*! \fn static void flux_output_func(MeshS *pM, OutputS *pOut) * \brief New output format which outputs y-integrated angular momentum fluxes * Currently can only be used with 1 proc and 1 domain. */ static void flux_output_func(MeshS *pM, OutputS *pOut) { GridS *pG=pM->Domain[0][0].Grid; int nx1,nx2,nx3, ind, i,j,k, ind_i,ind_k; Real lx1, lx2, lx3; PrimS W[7],Ws[7],We[7]; Real x1[7],x2[7],x3[7],xs1[7],xs2[7],xs3[7],xe1[7],xe2[7],xe3[7]; Real dmin, dmax; Real **Fluxx=NULL; Real **FluxH=NULL; Real **FluxNu=NULL; Real **Th=NULL; Real **outCoordsx1=NULL; Real **outCoordsx3=NULL; Real **vx=NULL; Real **vy=NULL; Real **sigvx=NULL; Real **osigx=NULL; Real **davg=NULL; FILE *pfile; char *fname; nx1 = pG->Nx[0]; nx3 = pG->Nx[2]; nx2 = pG->Nx[1]; lx1 = pG->MaxX[0] - pG->MinX[0]; lx2 = pG->MaxX[1] - pG->MinX[1]; lx3 = pG->MaxX[2] - pG->MinX[2]; printf("%d, %d, %d, %g, %g, %g\n",nx1,nx2,nx3,lx1,lx2,lx3); #ifdef MPI_PARALLEL printf("%d, %d, %d, %g, %g, %g \n", myID_Comm_world,nx1,nx3,lx1,lx2,lx3); printf("IND %d: (%d,%d), (%d,%d)\n",myID_Comm_world,pG->is,pG->js,pG->ie,pG->je); #endif Fluxx=(Real **)calloc_2d_array(nx3,nx1,sizeof(Real)); if (Fluxx == NULL) return; FluxH=(Real **)calloc_2d_array(nx3,nx1,sizeof(Real)); if (FluxH == NULL) return; FluxNu=(Real **)calloc_2d_array(nx3,nx1,sizeof(Real)); if (FluxNu == NULL) return; Th=(Real **)calloc_2d_array(nx3,nx1,sizeof(Real)); if (Th == NULL) return; outCoordsx1=(Real **)calloc_2d_array(nx3,nx1,sizeof(Real)); if (outCoordsx1 == NULL) return; outCoordsx3=(Real **)calloc_2d_array(nx3,nx1,sizeof(Real)); if (outCoordsx3 == NULL) return; vx=(Real **)calloc_2d_array(nx3,nx1,sizeof(Real)); if (vx == NULL) return; vy=(Real **)calloc_2d_array(nx3,nx1,sizeof(Real)); if (vy == NULL) return; sigvx=(Real **)calloc_2d_array(nx3,nx1,sizeof(Real)); if (sigvx == NULL) return; osigx=(Real **)calloc_2d_array(nx3,nx1,sizeof(Real)); if (osigx == NULL) return; davg=(Real **)calloc_2d_array(nx3,nx1,sizeof(Real)); if (davg == NULL) return; /* Open file and write header */ if((fname = ath_fname(NULL,pM->outfilename,NULL,NULL,num_digit, pOut->num,pOut->id,"tab")) == NULL){ ath_error("[dump_tab]: Error constructing filename\n"); } if((pfile = fopen(fname,"w")) == NULL){ ath_error("[dump_tab]: Unable to open ppm file %s\n",fname); } free(fname); #ifdef MPI_PARALLEL if(myID_Comm_world == 0) #endif fprintf(pfile,"#t=%12.8e x,FH,Fx,Fnu,Th,vx,vy,davg,sigvx,omsigx \n", pOut->t); /* Compute y-integrated fluxes explicitly. * For the derivatives use a central difference method. * For the integration use a composite trapezoid method. * Both of these make use of the ghost cells for the boundary values. * 1 FluxH = < d * vx1 *vx2 > * 2 Fluxx = < 0.5 * omega * d * x1 * vx1 > * 3 FluxNu = - < nu_iso * d/dx vx2 > * 4 Th = - < d * d/dy phi > * 5 vx = < vx1 > * 6 vy = < vx2 > * 7 davg = < d > * 8 sigvx = < d * vx1 > * 9 osigx = < 0.5 * sig * omega * x1 > * * * x 4 x * 1 0 2 * x 3 x * * The variables are stored up as arrays of primitives W[7]. * W = ( W[k][j][i], W[k][j][i-1], W[k][j][i+1], W[k][j-1][i], * W[k][j+1][i], W[k-1][j][i], W[k+1][j][i] ) * This is needed for the integration and differentiation. * * The background shear is taken out of vy when doing computations. */ for(k=pG->ks; k <=pG->ke; k++) { for(i=pG->is; i<= pG->ie; i++) { ind_i=i-pG->is; ind_k=k-pG->ks; for(ind=0; ind < 7; ind++) { if (ind==0) { cc_pos(pG,i,pG->js,k,&xs1[ind],&xs2[ind],&xs3[ind]); cc_pos(pG,i,pG->je,k,&xe1[ind],&xe2[ind],&xe3[ind]); Ws[ind] = Cons_to_Prim(&(pG->U[k][pG->js][i])); We[ind] = Cons_to_Prim(&(pG->U[k][pG->je][i])); } if (ind > 0 && ind < 3) { cc_pos(pG,i+2*ind-3,pG->js,k,&xs1[ind],&xs2[ind],&xs3[ind]); cc_pos(pG,i+2*ind-3,pG->je,k,&xe1[ind],&xe2[ind],&xe3[ind]); Ws[ind] = Cons_to_Prim(&(pG->U[k][pG->js][i+2*ind-3])); We[ind] = Cons_to_Prim(&(pG->U[k][pG->je][i+2*ind-3])); } if (ind > 2 && ind < 5) { cc_pos(pG,i,pG->js+2*ind-7,k,&xs1[ind],&xs2[ind],&xs3[ind]); cc_pos(pG,i,pG->je+2*ind-7,k,&xe1[ind],&xe2[ind],&xe3[ind]); Ws[ind] = Cons_to_Prim(&(pG->U[k][pG->js+2*ind-7][i])); We[ind] = Cons_to_Prim(&(pG->U[k][pG->je+2*ind-7][i])); } if (ind > 4 && ind < 7) { if (pG->MinX[2] == pG->MaxX[2]) { cc_pos(pG,i,pG->js,k,&xs1[ind],&xs2[ind],&xs3[ind]); cc_pos(pG,i,pG->je,k,&xe1[ind],&xe2[ind],&xe3[ind]); Ws[ind] = Cons_to_Prim(&(pG->U[k][pG->js][i])); We[ind] = Cons_to_Prim(&(pG->U[k][pG->je][i])); } else { cc_pos(pG,i,pG->js,k+2*ind-11,&xs1[ind],&xs2[ind],&xs3[ind]); cc_pos(pG,i,pG->je,k+2*ind-11,&xe1[ind],&xe2[ind],&xe3[ind]); Ws[ind] = Cons_to_Prim(&(pG->U[k+2*ind-11][pG->js][i])); We[ind] = Cons_to_Prim(&(pG->U[k+2*ind-11][pG->je][i])); } } Ws[ind].V2 = Ws[ind].V2 + qshear*Omega_0*xs1[ind]; We[ind].V2 = We[ind].V2 + qshear*Omega_0*xe1[ind]; /* If using d' instead of d then put in * W[ind] = W[ind]->d - d0; */ } /* Set initial values for the integration */ FluxH[ind_k][ind_i] = 0.5*( Ws[0].d * Ws[0].V1 * Ws[0].V2 + We[0].d * We[0].V1 * We[0].V2 ); Fluxx[ind_k][ind_i] = 0.5*( Ws[0].d * Ws[0].V1 * xs1[0] + We[0].d * We[0].V1 * xe1[0] ); #ifdef VISCOSITY FluxNu[ind_k][ind_i] = 0.5*( Ws[2].V2 - Ws[1].V2 + We[2].V2 - We[1].V2 ); #else FluxNu[ind_k][ind_i] = 0; #endif Th[ind_k][ind_i] = 0.5*( Ws[0].d * dx2PlanetPot(xs1[0],xs2[0],xs3[0]) + We[0].d * dx2PlanetPot(xe1[0],xe2[0],xe3[0]) ); vx[ind_k][ind_i] = 0.5*( Ws[0].V1 + We[0].V1 ); vy[ind_k][ind_i] = 0.5*( Ws[0].V2 + We[0].V2 ); sigvx[ind_k][ind_i] = 0.5*( Ws[0].d * Ws[0].V1 + We[0].d * We[0].V1 ); osigx[ind_k][ind_i] = 0.5*( Ws[0].d * xs1[0] + We[0].d * xe1[0] ); davg[ind_k][ind_i] = 0.5*(Ws[0].d + We[0].d); for(j=(pG->js)+1; j < pG->je; j++) { for(ind=0; ind < 7; ind++) { if (ind==0) { cc_pos(pG,i,j,k,&x1[ind],&x2[ind],&x3[ind]); W[ind] = Cons_to_Prim(&(pG->U[k][j][i])); } if (ind > 0 && ind < 3) { cc_pos(pG,i+2*ind-3,j,k,&x1[ind],&x2[ind],&x3[ind]); W[ind] = Cons_to_Prim(&(pG->U[k][j][i+2*ind-3])); } if (ind > 2 && ind < 5) { cc_pos(pG,i,j+2*ind-7,k,&x1[ind],&x2[ind],&x3[ind]); W[ind] = Cons_to_Prim(&(pG->U[k][j+2*ind-7][i])); } if (ind > 4 && ind < 7) { if (pG->MinX[2] == pG->MaxX[2]) { cc_pos(pG,i,j,k,&x1[ind],&x2[ind],&x3[ind]); W[ind] = Cons_to_Prim(&(pG->U[k][j][i])); } else { cc_pos(pG,i,j,k+2*ind-11,&x1[ind],&x2[ind],&x3[ind]); W[ind] = Cons_to_Prim(&(pG->U[k+2*ind-11][j][i])); } } W[ind].V2 = W[ind].V2 + qshear*Omega_0*x1[ind]; } FluxH[ind_k][ind_i] += W[0].d * W[0].V1 * W[0].V2; Fluxx[ind_k][ind_i] += W[0].d * W[0].V1 * x1[0]; #ifdef VISCOSITY FluxNu[ind_k][ind_i] += W[0].d * (W[2].V2 - W[1].V1); #endif Th[ind_k][ind_i] += W[0].d * dx2PlanetPot(x1[0],x2[0],x3[0]); vx[ind_k][ind_i] += W[0].V1; vy[ind_k][ind_i] += W[0].V2; sigvx[ind_k][ind_i] += W[0].d * W[0].V1; osigx[ind_k][ind_i] += W[0].d * x1[0]; davg[ind_k][ind_i] += W[0].d; } FluxH[ind_k][ind_i] *= (pG->dx2)/lx2; Fluxx[ind_k][ind_i] *= .5*Omega_0*(pG->dx2)/lx2; #ifdef VISCOSITY FluxNu[ind_k][ind_i] *= -nu_iso*(pG->dx2)/(2*lx2*(pG->dx1)); #endif Th[ind_k][ind_i] *= -1.0*(pG->dx2)/lx2; vx[ind_k][ind_i] *= (pG->dx2)/lx2; vy[ind_k][ind_i] *= (pG->dx2)/lx2; sigvx[ind_k][ind_i] *= (pG->dx2)/lx2; osigx[ind_k][ind_i] *= (0.5*Omega_0*(pG->dx2))/lx2; davg[ind_k][ind_i] *= (pG->dx2)/lx2; outCoordsx1[ind_k][ind_i]=x1[0]; outCoordsx3[ind_k][ind_i]=x3[0]; } } /* Quantities are ready to be written to output file * Format (Not outputting x3 at the moment: * x1 (x3) FluxH Fluxx Fluxnu Th vx vy davg sigvx osigx */ for(k=pG->ks; k<=pG->ke; k++) { for(i=pG->is; i<=pG->ie; i++) { ind_k=k-pG->ks; ind_i=i-pG->is; if (lx3==0) { fprintf(pfile,"%12.8e %12.8e %12.8e %12.8e %12.8e %12.8e %12.8e %12.8e %12.8e %12.8e\n", outCoordsx1[ind_k][ind_i],FluxH[ind_k][ind_i], Fluxx[ind_k][ind_i],FluxNu[ind_k][ind_i],Th[ind_k][ind_i], vx[ind_k][ind_i],vy[ind_k][ind_i],davg[ind_k][ind_i],sigvx[ind_k][ind_i], osigx[ind_k][ind_i]); } else { fprintf(pfile,"%12.8e %12.8e %12.8e %12.8e %12.8e %12.8e %12.8e %12.8e %12.8e %12.8e %12.8e\n", outCoordsx1[ind_k][ind_i],outCoordsx3[ind_k][ind_i],FluxH[ind_k][ind_i], Fluxx[ind_k][ind_i],FluxNu[ind_k][ind_i],Th[ind_k][ind_i], vx[ind_k][ind_i],vy[ind_k][ind_i],davg[ind_k][ind_i],sigvx[ind_k][ind_i], osigx[ind_k][ind_i]); } } } fclose(pfile); free_2d_array(Fluxx); free_2d_array(FluxH); free_2d_array(FluxNu); free_2d_array(Th); free_2d_array(outCoordsx1); free_2d_array(outCoordsx3); free_2d_array(vx); free_2d_array(vy); free_2d_array(sigvx); free_2d_array(osigx); free_2d_array(davg); return; }
void dump_history(MeshS *pM, OutputS *pOut) { GridS *pG; DomainS *pD; int i,j,k,is,ie,js,je,ks,ke,nl,nd; double dVol, scal[NSCAL + NSCALARS + MAX_USR_H_COUNT], d1; FILE *pfile; char *fname,*plev=NULL,*pdom=NULL,*pdir=NULL,fmt[80]; char levstr[8],domstr[8],dirstr[20]; int n, total_hst_cnt, mhst, myID_Comm_Domain=1; #ifdef MPI_PARALLEL double my_scal[NSCAL + NSCALARS + MAX_USR_H_COUNT]; /* My Volume averages */ int ierr; #endif #ifdef CYLINDRICAL Real x1,x2,x3; #endif #ifdef SPECIAL_RELATIVITY PrimS W; Real g, g2, g_2; Real bx, by, bz, vB, b2, Bmag2; #endif total_hst_cnt = 9 + NSCALARS + usr_hst_cnt; #ifdef ADIABATIC total_hst_cnt++; #endif #ifdef MHD total_hst_cnt += 3; #endif #ifdef SELF_GRAVITY total_hst_cnt += 1; #endif #ifdef CYLINDRICAL total_hst_cnt++; /* for angular momentum */ #endif #ifdef SPECIAL_RELATIVITY total_hst_cnt = 12 + usr_hst_cnt; #ifdef MHD total_hst_cnt += 6; #endif #endif /* Add a white space to the format */ if(pOut->dat_fmt == NULL){ sprintf(fmt," %%14.6e"); /* Use a default format */ } else{ sprintf(fmt," %s",pOut->dat_fmt); } /* store time and dt in first two elements of output vector */ scal[0] = pM->time; scal[1] = pM->dt; /* Loop over all Domains in Mesh, and output Grid data */ for (nl=0; nl<(pM->NLevels); nl++){ for (nd=0; nd<(pM->DomainsPerLevel[nl]); nd++){ if (pM->Domain[nl][nd].Grid != NULL){ //printf("calculating local sum ... %d\n",myID_Comm_world); pG = pM->Domain[nl][nd].Grid; pD = (DomainS*)&(pM->Domain[nl][nd]); is = pG->is, ie = pG->ie; js = pG->js, je = pG->je; ks = pG->ks, ke = pG->ke; for (i=2; i<total_hst_cnt; i++) { scal[i] = 0.0; } /* Compute history variables */ for (k=ks; k<=ke; k++) { for (j=js; j<=je; j++) { for (i=is; i<=ie; i++) { dVol = 1.0; if (pG->dx1 > 0.0) dVol *= pG->dx1; if (pG->dx2 > 0.0) dVol *= pG->dx2; if (pG->dx3 > 0.0) dVol *= pG->dx3; #ifndef SPECIAL_RELATIVITY #ifdef CYLINDRICAL cc_pos(pG,i,j,k,&x1,&x2,&x3); dVol *= x1; #endif mhst = 2; scal[mhst] += dVol*pG->U[k][j][i].d; d1 = 1.0/pG->U[k][j][i].d; #ifndef BAROTROPIC mhst++; scal[mhst] += dVol*pG->U[k][j][i].E; #endif mhst++; scal[mhst] += dVol*pG->U[k][j][i].M1; mhst++; scal[mhst] += dVol*pG->U[k][j][i].M2; mhst++; scal[mhst] += dVol*pG->U[k][j][i].M3; mhst++; scal[mhst] += dVol*0.5*SQR(pG->U[k][j][i].M1)*d1; mhst++; scal[mhst] += dVol*0.5*SQR(pG->U[k][j][i].M2)*d1; mhst++; scal[mhst] += dVol*0.5*SQR(pG->U[k][j][i].M3)*d1; #ifdef MHD mhst++; scal[mhst] += dVol*0.5*SQR(pG->U[k][j][i].B1c); mhst++; scal[mhst] += dVol*0.5*SQR(pG->U[k][j][i].B2c); mhst++; scal[mhst] += dVol*0.5*SQR(pG->U[k][j][i].B3c); #endif #ifdef SELF_GRAVITY mhst++; scal[mhst] += dVol*pG->U[k][j][i].d*pG->Phi[k][j][i]; #endif #if (NSCALARS > 0) for(n=0; n<NSCALARS; n++){ mhst++; scal[mhst] += dVol*pG->U[k][j][i].s[n]; } #endif #ifdef CYLINDRICAL mhst++; scal[mhst] += dVol*(x1*pG->U[k][j][i].M2); #endif #else /* SPECIAL_RELATIVITY */ W = Cons_to_Prim (&(pG->U[k][j][i])); /* calculate gamma */ g = pG->U[k][j][i].d/W.d; g2 = SQR(g); g_2 = 1.0/g2; mhst = 2; scal[mhst] += dVol*pG->U[k][j][i].d; mhst++; scal[mhst] += dVol*pG->U[k][j][i].E; mhst++; scal[mhst] += dVol*pG->U[k][j][i].M1; mhst++; scal[mhst] += dVol*pG->U[k][j][i].M2; mhst++; scal[mhst] += dVol*pG->U[k][j][i].M3; mhst++; scal[mhst] += dVol*SQR(g); mhst++; scal[mhst] += dVol*SQR(g*W.V1); mhst++; scal[mhst] += dVol*SQR(g*W.V2); mhst++; scal[mhst] += dVol*SQR(g*W.V3); mhst++; scal[mhst] += dVol*W.P; #ifdef MHD vB = W.V1*pG->U[k][j][i].B1c + W.V2*W.B2c + W.V3*W.B3c; Bmag2 = SQR(pG->U[k][j][i].B1c) + SQR(W.B2c) + SQR(W.B3c); bx = g*(pG->U[k][j][i].B1c*g_2 + vB*W.V1); by = g*(W.B2c*g_2 + vB*W.V2); bz = g*(W.B3c*g_2 + vB*W.V3); b2 = Bmag2*g_2 + vB*vB; mhst++; scal[mhst] += dVol*(g*vB*g*vB); mhst++; scal[mhst] += dVol*bx*bx; mhst++; scal[mhst] += dVol*by*by; mhst++; scal[mhst] += dVol*bz*bz; mhst++; scal[mhst] += dVol*b2; mhst++; scal[mhst] += dVol*(Bmag2*(1.0 - 0.5*g_2) - SQR(vB) / 2.0); #endif /* MHD */ #endif /* SPECIAL_RELATIVITY */ /* Calculate the user defined history variables */ for(n=0; n<usr_hst_cnt; n++){ mhst++; scal[mhst] += dVol*(*phst_fun[n])(pG, i, j, k); } } } } /* Compute the sum over all Grids in Domain */ //printf("calculating global sum ... %d\n",myID_Comm_world); #ifdef MPI_PARALLEL for(i=2; i<total_hst_cnt; i++){ my_scal[i] = scal[i]; } ierr = MPI_Reduce(&(my_scal[2]), &(scal[2]), (total_hst_cnt - 2), MPI_DOUBLE, MPI_SUM, 0, pD->Comm_Domain); #endif /* Only the parent (rank=0) process computes the average and writes output. * For single-processor jobs, myID_Comm_world is always zero. */ #ifdef MPI_PARALLEL ierr = MPI_Comm_rank(pD->Comm_Domain, &myID_Comm_Domain); #endif if((myID_Comm_Domain==0) || (myID_Comm_world==0)){ /* I'm the parent */ /* Compute volume averages */ // printf("dump history ... %d\n",myID_Comm_world); dVol = pD->MaxX[0] - pD->MinX[0]; #ifdef CYLINDRICAL dVol = 0.5*(SQR(pD->MaxX[0]) - SQR(pD->MinX[0])); #endif if (pD->Nx[1] > 1) dVol *= (pD->MaxX[1] - pD->MinX[1]); if (pD->Nx[2] > 1) dVol *= (pD->MaxX[2] - pD->MinX[2]); for(i=2; i<total_hst_cnt; i++){ scal[i] /= dVol; } /* Create filename and open file. History files are always written in lev# * directories of root process (rank=0 in MPI_COMM_WORLD) */ #ifdef MPI_PARALLEL if (nl>0) { plev = &levstr[0]; sprintf(plev,"lev%d",nl); pdir = &dirstr[0]; sprintf(pdir,"../id0/lev%d",nl); } #else if (nl>0) { plev = &levstr[0]; sprintf(plev,"lev%d",nl); pdir = &dirstr[0]; sprintf(pdir,"lev%d",nl); } #endif if (nd>0) { pdom = &domstr[0]; sprintf(pdom,"dom%d",nd); } fname = ath_fname(pdir,pM->outfilename,plev,pdom,0,0,NULL,"hst"); if(fname == NULL){ ath_perr(-1,"[dump_history]: Unable to create history filename\n"); } if(pOut->num == 0) pfile = fopen(fname,"w"); else pfile = fopen(fname,"a"); if(pfile == NULL){ ath_perr(-1,"[dump_history]: Unable to open the history file\n"); } free(fname); /* Write out column headers, but only for first dump */ mhst = 0; if(pOut->num == 0){ fprintf(pfile, "# Athena history dump for level=%i domain=%i volume=%e\n",nl,nd,dVol); mhst++; fprintf(pfile,"# [%i]=time ",mhst); mhst++; fprintf(pfile," [%i]=dt ",mhst); #ifndef SPECIAL_RELATIVITY mhst++; fprintf(pfile," [%i]=mass ",mhst); #ifdef ADIABATIC mhst++; fprintf(pfile," [%i]=total E ",mhst); #endif mhst++; fprintf(pfile," [%i]=x1 Mom. ",mhst); mhst++; fprintf(pfile," [%i]=x2 Mom. ",mhst); mhst++; fprintf(pfile," [%i]=x3 Mom. ",mhst); mhst++; fprintf(pfile," [%i]=x1-KE ",mhst); mhst++; fprintf(pfile," [%i]=x2-KE ",mhst); mhst++; fprintf(pfile," [%i]=x3-KE ",mhst); #ifdef MHD mhst++; fprintf(pfile," [%i]=x1-ME ",mhst); mhst++; fprintf(pfile," [%i]=x2-ME ",mhst); mhst++; fprintf(pfile," [%i]=x3-ME ",mhst); #endif #ifdef SELF_GRAVITY mhst++; fprintf(pfile," [%i]=grav PE ",mhst); #endif #if (NSCALARS > 0) for(n=0; n<NSCALARS; n++){ mhst++; fprintf(pfile," [%i]=scalar %i",mhst,n); } #endif #ifdef CYLINDRICAL mhst++; fprintf(pfile," [%i]=Ang.Mom.",mhst); #endif #else /* SPECIAL_RELATIVITY */ mhst++; fprintf(pfile," [%i]=mass ",mhst); mhst++; fprintf(pfile," [%i]=total E ",mhst); mhst++; fprintf(pfile," [%i]=x1 Mom. ",mhst); mhst++; fprintf(pfile," [%i]=x2 Mom. ",mhst); mhst++; fprintf(pfile," [%i]=x3 Mom." ,mhst); mhst++; fprintf(pfile," [%i]=Gamma ",mhst); mhst++; fprintf(pfile," [%i]=x1-KE ",mhst); mhst++; fprintf(pfile," [%i]=x2-KE ",mhst); mhst++; fprintf(pfile," [%i]=x3-KE " ,mhst); mhst++; fprintf(pfile," [%i]=Press " ,mhst); #ifdef MHD mhst++; fprintf(pfile," [%i]=x0-ME " ,mhst); mhst++; fprintf(pfile," [%i]=x1-ME " ,mhst); mhst++; fprintf(pfile," [%i]=x2-ME " ,mhst); mhst++; fprintf(pfile," [%i]=x3-ME " ,mhst); mhst++; fprintf(pfile," [%i]=bsq " ,mhst); mhst++; fprintf(pfile," [%i]=T^00_EM" ,mhst); #endif #endif /* SPECIAL_RELATIVITY */ for(n=0; n<usr_hst_cnt; n++){ mhst++; fprintf(pfile," [%i]=%s",mhst,usr_label[n]); } fprintf(pfile,"\n#\n"); } /* Write out data, and close file */ for (i=0; i<total_hst_cnt; i++) { //printf("dump history data %d ... %d\n",i,myID_Comm_world); fprintf(pfile,fmt,scal[i]); } fprintf(pfile,"\n"); fclose(pfile); } } } } return; }
void dump_tab_prim(MeshS *pM, OutputS *pOut) { GridS *pG; int nl,nd,i,j,k,il,iu,jl,ju,kl,ku; FILE *pfile; char *fname,*plev=NULL,*pdom=NULL; char levstr[8],domstr[8]; PrimS W; Real x1,x2,x3; char zone_fmt[20], fmt[80]; int col_cnt, nmax; #ifdef PARTICLES Real d1; #endif #if (NSCALARS > 0) int n; #endif /* Add a white space to the format, setup format for integer zone columns */ if(pOut->dat_fmt == NULL){ sprintf(fmt," %%12.8e"); /* Use a default format */ } else{ sprintf(fmt," %s",pOut->dat_fmt); } /* Loop over all Domains in Mesh, and output Grid data */ for (nl=0; nl<(pM->NLevels); nl++){ for (nd=0; nd<(pM->DomainsPerLevel[nl]); nd++){ if (pM->Domain[nl][nd].Grid != NULL){ /* write files if domain and level match input, or are not specified (-1) */ if ((pOut->nlevel == -1 || pOut->nlevel == nl) && (pOut->ndomain == -1 || pOut->ndomain == nd)){ pG = pM->Domain[nl][nd].Grid; col_cnt = 1; /* construct output filename. */ if (nl>0) { plev = &levstr[0]; sprintf(plev,"lev%d",nl); } if (nd>0) { pdom = &domstr[0]; sprintf(pdom,"dom%d",nd); } if((fname = ath_fname(plev,pM->outfilename,plev,pdom,num_digit, pOut->num,NULL,"tab")) == NULL){ ath_error("[dump_tab]: Error constructing filename\n"); } /* open output file */ if((pfile = fopen(fname,"w")) == NULL){ ath_error("[dump_tab]: Unable to open ppm file %s\n",fname); } free(fname); /* Upper and Lower bounds on i,j,k for data dump */ il = pG->is; iu = pG->ie; jl = pG->js; ju = pG->je; kl = pG->ks; ku = pG->ke; nmax = pG->Nx[0] > pG->Nx[1] ? pG->Nx[0] : pG->Nx[1]; nmax = (pG->Nx[2] > nmax ? pG->Nx[2] : nmax); #ifdef WRITE_GHOST_CELLS iu = pG->ie + nghost; il = pG->is - nghost; if(pG->Nx[1] > 1) { ju = pG->je + nghost; jl = pG->js - nghost; } if(pG->Nx[2] > 1) { ku = pG->ke + nghost; kl = pG->ks - nghost; } nmax += 2*nghost; #endif sprintf(zone_fmt,"%%%dd", (int)(2+log10((double)(nmax)))); /* Write out some header information */ if (pG->Nx[0] > 1) { fprintf(pfile,"# Nx1 = %d\n",iu-il+1); fprintf(pfile,"# x1-size = %g\n",(iu-il+1)*pG->dx1); } if (pG->Nx[1] > 1) { fprintf(pfile,"# Nx2 = %d\n",ju-jl+1); fprintf(pfile,"# x2-size = %g\n",(ju-jl+1)*pG->dx2); } if (pG->Nx[2] > 1) { fprintf(pfile,"# Nx3 = %d\n",ku-kl+1); fprintf(pfile,"# x3-size = %g\n",(ku-kl+1)*pG->dx3); } fprintf(pfile,"# PRIMITIVE vars at Time = %g, level= %i, domain= %i\n", pM->time,nl,nd); /* write out i,j,k column headers. Note column number is embedded in header */ fprintf(pfile,"# [%d]=i-zone",col_cnt); col_cnt++; if (pG->Nx[1] > 2) { fprintf(pfile," [%d]=j-zone",col_cnt); col_cnt++; } if (pG->Nx[2] > 3) { fprintf(pfile," [%d]=k-zone",col_cnt); col_cnt++; } /* write out x1,x2,x3 column headers. */ fprintf(pfile," [%d]=x1",col_cnt); col_cnt++; if (pG->Nx[1] > 2) { fprintf(pfile," [%d]=x2",col_cnt); col_cnt++; } if (pG->Nx[2] > 3) { fprintf(pfile," [%d]=x3",col_cnt); col_cnt++; } /* write out d,V1,V2,V3 column headers */ fprintf(pfile," [%d]=d",col_cnt); col_cnt++; fprintf(pfile," [%d]=V1",col_cnt); col_cnt++; fprintf(pfile," [%d]=V2",col_cnt); col_cnt++; fprintf(pfile," [%d]=V3",col_cnt); col_cnt++; /* write out P column header, if not barotropic */ #ifndef BAROTROPIC fprintf(pfile," [%d]=P",col_cnt); col_cnt++; #endif /* BAROTROPIC */ /* write out magnetic field component column headers, if mhd */ #ifdef MHD fprintf(pfile," [%d]=B1c",col_cnt); col_cnt++; fprintf(pfile," [%d]=B2c",col_cnt); col_cnt++; fprintf(pfile," [%d]=B3c",col_cnt); col_cnt++; #endif /* MHD */ /* write out column header for gravitational potential (self-gravity) */ #ifdef SELF_GRAVITY fprintf(pfile," [%d]=Phi",col_cnt); col_cnt++; #endif /* write out column headers for particles */ #ifdef PARTICLES if (pOut->out_pargrid) { fprintf(pfile," [%d]=dpar",col_cnt); col_cnt++; fprintf(pfile," [%d]=V1par",col_cnt); col_cnt++; fprintf(pfile," [%d]=V2par",col_cnt); col_cnt++; fprintf(pfile," [%d]=V3par",col_cnt); col_cnt++; } #endif /* write out column headers for passive scalars */ #if (NSCALARS > 0) for (n=0; n<NSCALARS; n++) { fprintf(pfile," [%d]=s%d",col_cnt,n); col_cnt++; } #endif fprintf(pfile,"\n"); /* Write out data */ for(k=kl; k<=ku; k++){ for(j=jl; j<=ju; j++){ for(i=il; i<=iu; i++){ cc_pos(pG,i,j,k,&x1,&x2,&x3); W = Cons_to_Prim(&(pG->U[k][j][i])); if (pG->Nx[0] > 1) fprintf(pfile,zone_fmt,i); if (pG->Nx[1] > 1) fprintf(pfile,zone_fmt,j); if (pG->Nx[2] > 1) fprintf(pfile,zone_fmt,k); if (pG->Nx[0] > 1) fprintf(pfile,fmt,x1); if (pG->Nx[1] > 1) fprintf(pfile,fmt,x2); if (pG->Nx[2] > 1) fprintf(pfile,fmt,x3); /* Dump all variables */ fprintf(pfile,fmt,W.d); fprintf(pfile,fmt,W.V1); fprintf(pfile,fmt,W.V2); fprintf(pfile,fmt,W.V3); #ifndef BAROTROPIC fprintf(pfile,fmt,W.P); #endif /* BAROTROPIC */ #ifdef MHD fprintf(pfile,fmt,W.B1c); fprintf(pfile,fmt,W.B2c); fprintf(pfile,fmt,W.B3c); #endif #ifdef SELF_GRAVITY fprintf(pfile,fmt,pG->Phi[k][j][i]); #endif #ifdef PARTICLES if (pOut->out_pargrid) { fprintf(pfile,fmt,pG->Coup[k][j][i].grid_d); if (pG->Coup[k][j][i].grid_d>0.0) d1 = 1.0/pG->Coup[k][j][i].grid_d; else d1 = 0.0; fprintf(pfile,fmt,pG->Coup[k][j][i].grid_v1*d1); fprintf(pfile,fmt,pG->Coup[k][j][i].grid_v2*d1); fprintf(pfile,fmt,pG->Coup[k][j][i].grid_v3*d1); } #endif #if (NSCALARS > 0) for (n=0; n<NSCALARS; n++) fprintf(pfile,fmt,W.r[n]); #endif fprintf(pfile,"\n"); } } } }} } /* end loop over domains */ } /* end loop over levels */ fclose(pfile); return; }
void dump_binary(MeshS *pM, OutputS *pOut) { GridS *pGrid; PrimS ***W; FILE *p_binfile; char *fname,*plev=NULL,*pdom=NULL; char levstr[8],domstr[8]; int n,ndata[7]; /* Upper and Lower bounds on i,j,k for data dump */ int i,j,k,il,iu,jl,ju,kl,ku,nl,nd; Real dat[2],*datax,*datay,*dataz; Real *pData,x1,x2,x3; int coordsys = -1; /* Loop over all Domains in Mesh, and output Grid data */ for (nl=0; nl<(pM->NLevels); nl++){ for (nd=0; nd<(pM->DomainsPerLevel[nl]); nd++){ if (pM->Domain[nl][nd].Grid != NULL){ /* write files if domain and level match input, or are not specified (-1) */ if ((pOut->nlevel == -1 || pOut->nlevel == nl) && (pOut->ndomain == -1 || pOut->ndomain == nd)){ pGrid = pM->Domain[nl][nd].Grid; il = pGrid->is, iu = pGrid->ie; jl = pGrid->js, ju = pGrid->je; kl = pGrid->ks, ku = pGrid->ke; #ifdef WRITE_GHOST_CELLS il = pGrid->is - nghost; iu = pGrid->ie + nghost; if(pGrid->Nx[1] > 1){ jl = pGrid->js - nghost; ju = pGrid->je + nghost; } if(pGrid->Nx[2] > 1){ kl = pGrid->ks - nghost; ku = pGrid->ke + nghost; } #endif /* WRITE_GHOST_CELLS */ ndata[0] = iu-il+1; ndata[1] = ju-jl+1; ndata[2] = ku-kl+1; /* calculate primitive variables, if needed */ if(strcmp(pOut->out,"prim") == 0) { if((W = (PrimS***) calloc_3d_array(ndata[2],ndata[1],ndata[0],sizeof(PrimS))) == NULL) ath_error("[dump_bin]: failed to allocate Prim array\n"); for (k=kl; k<=ku; k++) { for (j=jl; j<=ju; j++) { for (i=il; i<=iu; i++) { W[k-kl][j-jl][i-il] = Cons_to_Prim(&(pGrid->U[k][j][i])); }}} } /* construct filename, open file */ if (nl>0) { plev = &levstr[0]; sprintf(plev,"lev%d",nl); } if (nd>0) { pdom = &domstr[0]; sprintf(pdom,"dom%d",nd); } if((fname = ath_fname(plev,pM->outfilename,plev,pdom,num_digit, pOut->num,NULL,"bin")) == NULL){ ath_error("[dump_binary]: Error constructing filename\n"); } if((p_binfile = fopen(fname,"wb")) == NULL){ ath_error("[dump_binary]: Unable to open binary dump file\n"); return; } free(fname); /* Write the coordinate system information */ #if defined CARTESIAN coordsys = -1; #elif defined CYLINDRICAL coordsys = -2; #elif defined SPHERICAL coordsys = -3; #endif fwrite(&coordsys,sizeof(int),1,p_binfile); /* Write number of zones and variables */ ndata[3] = NVAR; ndata[4] = NSCALARS; #ifdef SELF_GRAVITY ndata[5] = 1; #else ndata[5] = 0; #endif #ifdef PARTICLES ndata[6] = 1; #else ndata[6] = 0; #endif fwrite(ndata,sizeof(int),7,p_binfile); /* Write (gamma-1) and isothermal sound speed */ #ifdef ISOTHERMAL dat[0] = (Real)0.0; dat[1] = (Real)Iso_csound; #elif defined ADIABATIC dat[0] = (Real)Gamma_1 ; dat[1] = (Real)0.0; #else dat[0] = dat[1] = 0.0; /* Anything better to put here? */ #endif fwrite(dat,sizeof(Real),2,p_binfile); /* Write time, dt */ dat[0] = (Real)pGrid->time; dat[1] = (Real)pGrid->dt; fwrite(dat,sizeof(Real),2,p_binfile); /* Allocate Memory */ if((datax = (Real *)malloc(ndata[0]*sizeof(Real))) == NULL){ ath_error("[dump_binary]: malloc failed for temporary array\n"); return; } if((datay = (Real *)malloc(ndata[1]*sizeof(Real))) == NULL){ ath_error("[dump_binary]: malloc failed for temporary array\n"); return; } if((dataz = (Real *)malloc(ndata[2]*sizeof(Real))) == NULL){ ath_error("[dump_binary]: malloc failed for temporary array\n"); return; } /* compute x,y,z coordinates of cell centers, and write out */ for (i=il; i<=iu; i++) { cc_pos(pGrid,i,jl,kl,&x1,&x2,&x3); pData = ((Real *) &(x1)); datax[i-il] = (Real)(*pData); } fwrite(datax,sizeof(Real),(size_t)ndata[0],p_binfile); for (j=jl; j<=ju; j++) { cc_pos(pGrid,il,j,kl,&x1,&x2,&x3); pData = ((Real *) &(x2)); datay[j-jl] = (Real)(*pData); } fwrite(datay,sizeof(Real),(size_t)ndata[1],p_binfile); for (k=kl; k<=ku; k++) { cc_pos(pGrid,il,jl,k,&x1,&x2,&x3); pData = ((Real *) &(x3)); dataz[k-kl] = (Real)(*pData); } fwrite(dataz,sizeof(Real),(size_t)ndata[2],p_binfile); /* Write cell-centered data (either conserved or primitives) */ for (n=0;n<NVAR; n++) { for (k=0; k<ndata[2]; k++) { for (j=0; j<ndata[1]; j++) { for (i=0; i<ndata[0]; i++) { if (strcmp(pOut->out,"cons") == 0){ pData = ((Real*)&(pGrid->U[k+kl][j+jl][i+il])) + n; } else if(strcmp(pOut->out,"prim") == 0) { pData = ((Real*)&(W[k][j][i])) + n; } datax[i] = (Real)(*pData); } fwrite(datax,sizeof(Real),(size_t)ndata[0],p_binfile); }} } #ifdef SELF_GRAVITY for (k=0; k<ndata[2]; k++) { for (j=0; j<ndata[1]; j++) { for (i=0; i<ndata[0]; i++) { pData = &(pGrid->Phi[k+kl][j+jl][i+il]); datax[i] = (Real)(*pData); } fwrite(datax,sizeof(Real),(size_t)ndata[0],p_binfile); }} #endif #ifdef PARTICLES if (pOut->out_pargrid) { for (k=0; k<ndata[2]; k++) { for (j=0; j<ndata[1]; j++) { for (i=0; i<ndata[0]; i++) { datax[i] = pGrid->Coup[k+kl][j+jl][i+il].grid_d; } fwrite(datax,sizeof(Real),(size_t)ndata[0],p_binfile); }} for (k=0; k<ndata[2]; k++) { for (j=0; j<ndata[1]; j++) { for (i=0; i<ndata[0]; i++) { datax[i] = pGrid->Coup[k+kl][j+jl][i+il].grid_v1; } fwrite(datax,sizeof(Real),(size_t)ndata[0],p_binfile); }} for (k=0; k<ndata[2]; k++) { for (j=0; j<ndata[1]; j++) { for (i=0; i<ndata[0]; i++) { datax[i] = pGrid->Coup[k+kl][j+jl][i+il].grid_v2; } fwrite(datax,sizeof(Real),(size_t)ndata[0],p_binfile); }} for (k=0; k<ndata[2]; k++) { for (j=0; j<ndata[1]; j++) { for (i=0; i<ndata[0]; i++) { datax[i] = pGrid->Coup[k+kl][j+jl][i+il].grid_v3; } fwrite(datax,sizeof(Real),(size_t)ndata[0],p_binfile); }} } #endif /* close file and free memory */ fclose(p_binfile); free(datax); free(datay); free(dataz); if(strcmp(pOut->out,"prim") == 0) free_3d_array(W); }} } } }
/*! \fn void integrate_1d_vl(DomainS *pD) * \brief 1D version of van Leer unsplit integrator for MHD. * * The numbering of steps follows the numbering in the 3D version. * NOT ALL STEPS ARE NEEDED IN 1D. */ void integrate_1d_vl(DomainS *pD) { GridS *pG=(pD->Grid); ConsS U; Real dtodx1=pG->dt/pG->dx1, hdtodx1=0.5*pG->dt/pG->dx1; int i, is = pG->is, ie = pG->ie; int js = pG->js; int ks = pG->ks; int cart_x1 = 1, cart_x2 = 2, cart_x3 = 3; Real x1,x2,x3,phicl,phicr,phifc,phil,phir,phic; #if (NSCALARS > 0) int n; #endif #ifdef SELF_GRAVITY Real gxl,gxr,flx_m1l,flx_m1r; #endif #ifdef STATIC_MESH_REFINEMENT int ncg,npg,dim; #endif #ifdef FIRST_ORDER_FLUX_CORRECTION int flag_cell=0,negd=0,negP=0,superl=0,NaNFlux=0; int fail=0,final=0; Real Vsq,Bx; PrimS Wcheck; Int3Vect BadCell; #endif int il=is-(nghost-1), iu=ie+(nghost-1); for (i=is-nghost; i<=ie+nghost; i++) { Uhalf[i] = pG->U[ks][js][i]; W[i] = Cons_to_Prim(&(pG->U[ks][js][i])); } /*=== STEP 1: Compute first-order fluxes at t^{n} in x1-direction ============*/ /* No source terms are needed since there is no temporal evolution */ /*--- Step 1a ------------------------------------------------------------------ * Load 1D vector of primitive variables; * W1d = (d, V1, V2, V3, P, B2c, B3c, s[n]) */ for (i=is-nghost; i<=ie+nghost; i++) { W1d[i].d = W[i].d; W1d[i].Vx = W[i].V1; W1d[i].Vy = W[i].V2; W1d[i].Vz = W[i].V3; W1d[i].P = W[i].P; #ifdef MHD W1d[i].By = W[i].B2c; W1d[i].Bz = W[i].B3c; Bxc[i] = W[i].B1c; Bxi[i] = pG->B1i[ks][js][i]; #endif /* MHD */ #if (NSCALARS > 0) for (n=0; n<NSCALARS; n++) W1d[i].s[n] = W[i].s[n]; #endif } /*--- Step 1b ------------------------------------------------------------------ * Compute first-order L/R states */ /* Ensure that W & U are consistent */ for (i=is-nghost; i<=ie+nghost; i++) { U1d[i] = Prim1D_to_Cons1D(&W1d[i],&Bxc[i]); } for (i=il; i<=ie+nghost; i++) { Wl[i] = W1d[i-1]; Wr[i] = W1d[i ]; Ul[i] = U1d[i-1]; Ur[i] = U1d[i ]; } /*--- Step 1c ------------------------------------------------------------------ * No source terms needed */ /*--- Step 1d ------------------------------------------------------------------ * Compute flux in x1-direction */ for (i=il; i<=ie+nghost; i++) { fluxes(Ul[i],Ur[i],Wl[i],Wr[i],Bxi[i],&x1Flux[i]); } /*=== STEPS 2-4: Not needed in 1D ===*/ /*=== STEP 5: Update cell-centered variables to half-timestep ================*/ /*--- Step 5a ------------------------------------------------------------------ * Update cell-centered variables (including B2c and B3c) to half-timestep */ for (i=il; i<=iu; i++) { Uhalf[i].d -= hdtodx1*(x1Flux[i+1].d - x1Flux[i].d ); Uhalf[i].M1 -= hdtodx1*(x1Flux[i+1].Mx - x1Flux[i].Mx); Uhalf[i].M2 -= hdtodx1*(x1Flux[i+1].My - x1Flux[i].My); Uhalf[i].M3 -= hdtodx1*(x1Flux[i+1].Mz - x1Flux[i].Mz); Uhalf[i].E -= hdtodx1*(x1Flux[i+1].E - x1Flux[i].E ); #ifdef MHD Uhalf[i].B2c -= hdtodx1*(x1Flux[i+1].By - x1Flux[i].By); Uhalf[i].B3c -= hdtodx1*(x1Flux[i+1].Bz - x1Flux[i].Bz); #endif /* MHD */ #if (NSCALARS > 0) for (n=0; n<NSCALARS; n++) Uhalf[i].s[n] -= hdtodx1*(x1Flux[i+1].s[n] - x1Flux[i].s[n]); #endif #ifdef FIRST_ORDER_FLUX_CORRECTION x1FluxP[i] = x1Flux[i]; #endif } /*=== STEP 6: Add source terms to predict values at half-timestep ============*/ /*--- Step 6a ------------------------------------------------------------------ * Add source terms from a static gravitational potential for 0.5*dt to predict * step. To improve conservation of total energy, we average the energy * source term computed at cell faces. * S_{M} = -(\rho) Grad(Phi); S_{E} = -(\rho v) Grad{Phi} */ if (StaticGravPot != NULL) { for (i=il; i<=iu; i++) { cc_pos(pG,i,js,ks,&x1,&x2,&x3); phic = (*StaticGravPot)((x1 ),x2,x3); phir = (*StaticGravPot)((x1+0.5*pG->dx1),x2,x3); phil = (*StaticGravPot)((x1-0.5*pG->dx1),x2,x3); Uhalf[i].M1 -= hdtodx1*pG->U[ks][js][i].d*(phir-phil); Uhalf[i].E -= hdtodx1*(x1Flux[i ].d*(phic - phil) + x1Flux[i+1].d*(phir - phic)); } } /*=== STEP 7: Conserved->Primitive variable inversion at t^{n+1/2} ===========*/ /* Invert conserved variables at t^{n+1/2} to primitive variables. With FOFC, * if cell-centered d < 0, P< 0, or v^2 > 1, correct by switching back to * values at beginning of step, rendering update first order in time for that * cell. */ #ifdef FIRST_ORDER_FLUX_CORRECTION negd = 0; negP = 0; superl = 0; flag_cell = 0; #endif for (i=il; i<=iu; i++) { Whalf[i] = Cons_to_Prim(&Uhalf[i]); #ifdef FIRST_ORDER_FLUX_CORRECTION if (Whalf[i].d < 0.0) { flag_cell = 1; negd++; } if (Whalf[i].P < 0.0) { flag_cell = 1; negP++; } Vsq = SQR(Whalf[i].V1) + SQR(Whalf[i].V2) + SQR(Whalf[i].V3); if (Vsq > 1.0) { flag_cell = 1; superl++; } if (flag_cell != 0) { Whalf[i].d = W[i].d; Whalf[i].V1 = W[i].V1; Whalf[i].V2 = W[i].V2; Whalf[i].V3 = W[i].V3; Whalf[i].P = W[i].P; flag_cell=0; } #endif } #ifdef FIRST_ORDER_FLUX_CORRECTION if (negd > 0 || negP > 0 || superl > 0) printf("[Step7]: %i cells had d<0; %i cells had P<0; %i cells had v>1\n" ,negd,negP,superl); #endif /*=== STEP 8: Compute second-order L/R x1-interface states ===================*/ /*--- Step 8a ------------------------------------------------------------------ * Load 1D vector of primitive variables; * W = (d, V1, V2, V3, P, B2c, B3c, s[n]) */ for (i=il; i<=iu; i++) { W1d[i].d = Whalf[i].d; W1d[i].Vx = Whalf[i].V1; W1d[i].Vy = Whalf[i].V2; W1d[i].Vz = Whalf[i].V3; W1d[i].P = Whalf[i].P; #ifdef MHD W1d[i].By = Whalf[i].B2c; W1d[i].Bz = Whalf[i].B3c; Bxc[i] = Whalf[i].B1c; #endif /* MHD */ #if (NSCALARS > 0) for (n=0; n<NSCALARS; n++) W1d[i].s[n] = Whalf[i].s[n]; #endif /* NSCALARS */ } /*--- Step 8b ------------------------------------------------------------------ * Compute L/R states on x1-interfaces, store into arrays */ lr_states(pG,W1d,Bxc,pG->dt,pG->dx1,is,ie,Wl,Wr,cart_x1); #ifdef FIRST_ORDER_FLUX_CORRECTION for (i=il; i<=iu; i++) { Vsq = SQR(Wl[i].Vx) + SQR(Wl[i].Vy) + SQR(Wl[i].Vz); if (Vsq > 1.0) { Wl[i] = W1d[i]; Wr[i] = W1d[i]; } Vsq = SQR(Wr[i].Vx) + SQR(Wr[i].Vy) + SQR(Wr[i].Vz); if (Vsq > 1.0) { Wl[i] = W1d[i]; Wr[i] = W1d[i]; } } #endif for (i=is; i<=ie+1; i++) { Wl_x1Face[i] = Wl[i]; Wr_x1Face[i] = Wr[i]; } /*=== STEPS 9-10: Not needed in 1D ===*/ /*=== STEP 11: Compute x1-Flux ===============================================*/ /*--- Step 11b ----------------------------------------------------------------- * Compute second-order fluxes in x1-direction */ for (i=is; i<=ie+1; i++) { Ul[i] = Prim1D_to_Cons1D(&Wl_x1Face[i],&Bxi[i]); Ur[i] = Prim1D_to_Cons1D(&Wr_x1Face[i],&Bxi[i]); fluxes(Ul[i],Ur[i],Wl_x1Face[i],Wr_x1Face[i],Bxi[i],&x1Flux[i]); } /*=== STEP 12: Not needed in 1D ===*/ /*=== STEP 13: Add source terms for a full timestep using n+1/2 states =======*/ /*--- Step 13a ----------------------------------------------------------------- * Add gravitational source terms due to a Static Potential * To improve conservation of total energy, we average the energy * source term computed at cell faces. * S_{M} = -(\rho)^{n+1/2} Grad(Phi); S_{E} = -(\rho v)^{n+1/2} Grad{Phi} */ if (StaticGravPot != NULL) { for (i=is; i<=ie; i++) { cc_pos(pG,i,js,ks,&x1,&x2,&x3); phic = (*StaticGravPot)((x1 ),x2,x3); phir = (*StaticGravPot)((x1+0.5*pG->dx1),x2,x3); phil = (*StaticGravPot)((x1-0.5*pG->dx1),x2,x3); pG->U[ks][js][i].M1 -= dtodx1*Uhalf[i].d*(phir-phil); #ifndef BAROTROPIC pG->U[ks][js][i].E -= dtodx1*(x1Flux[i ].d*(phic - phil) + x1Flux[i+1].d*(phir - phic)); #endif } } /*=== STEP 14: Update cell-centered values for a full timestep ===============*/ /*--- Step 14a ----------------------------------------------------------------- * Update cell-centered variables in pG (including B2c and B3c) using x1-Fluxes */ for (i=is; i<=ie; i++) { pG->U[ks][js][i].d -= dtodx1*(x1Flux[i+1].d - x1Flux[i].d ); pG->U[ks][js][i].M1 -= dtodx1*(x1Flux[i+1].Mx - x1Flux[i].Mx); pG->U[ks][js][i].M2 -= dtodx1*(x1Flux[i+1].My - x1Flux[i].My); pG->U[ks][js][i].M3 -= dtodx1*(x1Flux[i+1].Mz - x1Flux[i].Mz); #ifndef BAROTROPIC pG->U[ks][js][i].E -= dtodx1*(x1Flux[i+1].E - x1Flux[i].E ); #endif /* BAROTROPIC */ #ifdef MHD pG->U[ks][js][i].B2c -= dtodx1*(x1Flux[i+1].By - x1Flux[i].By); pG->U[ks][js][i].B3c -= dtodx1*(x1Flux[i+1].Bz - x1Flux[i].Bz); /* For consistency, set B2i and B3i to cell-centered values. */ pG->B2i[ks][js][i] = pG->U[ks][js][i].B2c; pG->B3i[ks][js][i] = pG->U[ks][js][i].B3c; #endif /* MHD */ #if (NSCALARS > 0) for (n=0; n<NSCALARS; n++) pG->U[ks][js][i].s[n] -= dtodx1*(x1Flux[i+1].s[n] - x1Flux[i].s[n]); #endif } #ifdef FIRST_ORDER_FLUX_CORRECTION /*=== STEP 15: First-order flux correction ===================================*/ /*--- Step 15a ----------------------------------------------------------------- * If cell-centered d or P have gone negative, or if v^2 > 1, correct * by using 1st order predictor fluxes */ for (i=is; i<=ie; i++) { Wcheck = check_Prim(&(pG->U[ks][js][i])); if (Wcheck.d < 0.0) { flag_cell = 1; BadCell.i = i; BadCell.j = js; BadCell.k = ks; negd++; } if (Wcheck.P < 0.0) { flag_cell = 1; BadCell.i = i; BadCell.j = js; BadCell.k = ks; negP++; } Vsq = SQR(Wcheck.V1) + SQR(Wcheck.V2) + SQR(Wcheck.V3); if (Vsq > 1.0) { flag_cell = 1; BadCell.i = i; BadCell.j = js; BadCell.k = ks; superl++; } if (flag_cell != 0) { FixCell(pG, BadCell); flag_cell=0; } } if (negd > 0 || negP > 0 || superl > 0) { printf("[Step15a]: %i cells had d<0; %i cells had P<0;\n",negd,negP); printf("[Step15a]: %i cells had v>1 at 1st correction\n",superl); } /*--- Step 15b ----------------------------------------------------------------- * In SR the first-order flux correction can fail to fix an unphysical state. * We must fix these cells in order to avoid NaN's at the next timestep, * particuarly if v^2 > 1. We have 2 approaches; firstly, we use the entropy * equation (which we have not applied a 1st order flux correction to) to * calculate the pressure and the Lorentz factor of the gas. If this produces * and unphysical state, then we floor the pressure and iterate on v^2 until * v^2 < 1. Possibly could improved by averaging density and pressure from * adjacent cells and then calculating pressure. */ #ifdef MHD fail = 0; negd = 0; negP = 0; final = 0;