void CModel::SaveRelevant(FILE* file)
{
double maxprob;
int nrelmodels;
Diagnostics(maxprob,nrelmodels);
fprintf(file,"%d\n",nrelmodels);
CModel* p = Next;
while(NULL!=p)
{
if(exp(p->laplace-maxprob)>=mdCutoffMax)
{
fprintf(file,"%d",p->vars[0]);
for(int i=1;i<p->Length;i++)
{
fprintf(file,"\t%d",p->vars[i]);
}
fprintf(file,"\t%.10lf\n",p->laplace);
}
p = p->Next;
}
return;
}
// Returns true on error.
static bool format(std::string FileName) {
FileManager Files((FileSystemOptions()));
DiagnosticsEngine Diagnostics(
IntrusiveRefCntPtr<DiagnosticIDs>(new DiagnosticIDs),
new DiagnosticOptions);
SourceManager Sources(Diagnostics, Files);
OwningPtr<MemoryBuffer> Code;
if (error_code ec = MemoryBuffer::getFileOrSTDIN(FileName, Code)) {
llvm::errs() << ec.message() << "\n";
return true;
}
FileID ID = createInMemoryFile(FileName, Code.get(), Sources, Files);
Lexer Lex(ID, Sources.getBuffer(ID), Sources, getFormattingLangOpts());
if (Offsets.empty())
Offsets.push_back(0);
if (Offsets.size() != Lengths.size() &&
!(Offsets.size() == 1 && Lengths.empty())) {
llvm::errs()
<< "error: number of -offset and -length arguments must match.\n";
return true;
}
std::vector<CharSourceRange> Ranges;
for (unsigned i = 0, e = Offsets.size(); i != e; ++i) {
if (Offsets[i] >= Code->getBufferSize()) {
llvm::errs() << "error: offset " << Offsets[i]
<< " is outside the file\n";
return true;
}
SourceLocation Start =
Sources.getLocForStartOfFile(ID).getLocWithOffset(Offsets[i]);
SourceLocation End;
if (i < Lengths.size()) {
if (Offsets[i] + Lengths[i] > Code->getBufferSize()) {
llvm::errs() << "error: invalid length " << Lengths[i]
<< ", offset + length (" << Offsets[i] + Lengths[i]
<< ") is outside the file.\n";
return true;
}
End = Start.getLocWithOffset(Lengths[i]);
} else {
End = Sources.getLocForEndOfFile(ID);
}
Ranges.push_back(CharSourceRange::getCharRange(Start, End));
}
tooling::Replacements Replaces = reformat(getStyle(), Lex, Sources, Ranges);
if (OutputXML) {
llvm::outs()
<< "<?xml version='1.0'?>\n<replacements xml:space='preserve'>\n";
for (tooling::Replacements::const_iterator I = Replaces.begin(),
E = Replaces.end();
I != E; ++I) {
llvm::outs() << "<replacement "
<< "offset='" << I->getOffset() << "' "
<< "length='" << I->getLength() << "'>"
<< I->getReplacementText() << "</replacement>\n";
}
llvm::outs() << "</replacements>\n";
} else {
Rewriter Rewrite(Sources, LangOptions());
tooling::applyAllReplacements(Replaces, Rewrite);
if (Inplace) {
if (Replaces.size() == 0)
return false; // Nothing changed, don't touch the file.
std::string ErrorInfo;
llvm::raw_fd_ostream FileStream(FileName.c_str(), ErrorInfo,
llvm::raw_fd_ostream::F_Binary);
if (!ErrorInfo.empty()) {
llvm::errs() << "Error while writing file: " << ErrorInfo << "\n";
return true;
}
Rewrite.getEditBuffer(ID).write(FileStream);
FileStream.flush();
} else {
Rewrite.getEditBuffer(ID).write(outs());
}
}
return false;
}
int main (int argc, char const * argv [])
{
extern struct channel channel;
static char const * optv [] =
{
"cCef:ri:qvz:",
"device [device] [...] [> stdout]",
"Qualcomm Atheros INT6x00 Log Retrieval Utility",
"c\tclear watchdog and checkpoint reports",
"C\tcustom watchdog report",
"e\tredirect stderr to stdout",
"f s\tprint Watchdog Report in format (s) [xml]",
#if defined (WINPCAP) || defined (LIBPCAP)
"i n\thost interface is (n) [" LITERAL (CHANNEL_ETHNUMBER) "]",
#else
"i s\thost interface is (s) [" LITERAL (CHANNEL_ETHDEVICE) "]",
#endif
"q\tquiet mode",
"r\tread ",
"v\tverbose mode",
(char const *) (0)
};
#include "../plc/plc.c"
signed c;
if (getenv (PLCDEVICE))
{
#if defined (WINPCAP) || defined (LIBPCAP)
channel.ifindex = atoi (getenv (PLCDEVICE));
#else
channel.ifname = strdup (getenv (PLCDEVICE));
#endif
}
optind = 1;
plc.readaction = 0;
plc.action = INT6KLOG_FMT_XML;
while ((c = getoptv (argc, argv, optv)) != -1)
{
switch (c)
{
case 'C':
_setbits (plc.readaction, WD_ACTION_CUSTOM);
break;
case 'c':
_setbits (plc.readaction, WD_ACTION_CLEAR);
break;
case 'e':
dup2 (STDOUT_FILENO, STDERR_FILENO);
break;
case 'f':
if ((c = lookup (optarg, formats, SIZEOF (formats))) == -1)
{
assist (optarg, "format", formats, SIZEOF (formats));
}
plc.action = (uint8_t)(c);
break;
case 'i':
#if defined (WINPCAP) || defined (LIBPCAP)
channel.ifindex = atoi (optarg);
#else
channel.ifname = optarg;
#endif
break;
case 'q':
_setbits (channel.flags, CHANNEL_SILENCE);
_setbits (plc.flags, PLC_SILENCE);
break;
case 'r':
_setbits (plc.readaction, WD_ACTION_READ);
break;
case 'v':
_setbits (channel.flags, CHANNEL_VERBOSE);
_setbits (plc.flags, PLC_VERBOSE);
break;
case 'z':
plc.readaction = (uint8_t)(uintspec (optarg, 0, 255));
break;
default:
break;
}
}
argc -= optind;
argv += optind;
if (argc != 1)
{
if (plc.rpt.file != -1)
{
error (1, ECANCELED, PLC_NODEVICE);
}
}
openchannel (&channel);
if (!(plc.message = malloc (sizeof (* plc.message))))
{
error (1, errno, PLC_NOMEMORY);
}
#ifdef WIN32
if (plc.action == INT6KLOG_FMT_RAW)
{
setmode (STDOUT_FILENO, O_BINARY);
}
#endif
if (!argc)
{
Diagnostics (&plc);
}
while ((argc) && (* argv))
{
if (!hexencode (channel.peer, sizeof (channel.peer), synonym (* argv, devices, SIZEOF (devices))))
{
error (1, errno, PLC_BAD_MAC, * argv);
}
Diagnostics (&plc);
argc--;
argv++;
}
free (plc.message);
closechannel (&channel);
exit (0);
}
/// \brief Strips any positional args and possible argv[0] from a command-line
/// provided by the user to construct a FixedCompilationDatabase.
///
/// FixedCompilationDatabase requires a command line to be in this format as it
/// constructs the command line for each file by appending the name of the file
/// to be compiled. FixedCompilationDatabase also adds its own argv[0] to the
/// start of the command line although its value is not important as it's just
/// ignored by the Driver invoked by the ClangTool using the
/// FixedCompilationDatabase.
///
/// FIXME: This functionality should probably be made available by
/// clang::driver::Driver although what the interface should look like is not
/// clear.
///
/// \param[in] Args Args as provided by the user.
/// \return Resulting stripped command line.
/// \li true if successful.
/// \li false if \c Args cannot be used for compilation jobs (e.g.
/// contains an option like -E or -version).
static bool stripPositionalArgs(std::vector<const char *> Args,
std::vector<std::string> &Result) {
IntrusiveRefCntPtr<DiagnosticOptions> DiagOpts = new DiagnosticOptions();
UnusedInputDiagConsumer DiagClient;
DiagnosticsEngine Diagnostics(
IntrusiveRefCntPtr<clang::DiagnosticIDs>(new DiagnosticIDs()),
&*DiagOpts, &DiagClient, false);
// The clang executable path isn't required since the jobs the driver builds
// will not be executed.
std::unique_ptr<driver::Driver> NewDriver(new driver::Driver(
/* ClangExecutable= */ "", llvm::sys::getDefaultTargetTriple(),
Diagnostics));
NewDriver->setCheckInputsExist(false);
// This becomes the new argv[0]. The value is actually not important as it
// isn't used for invoking Tools.
Args.insert(Args.begin(), "clang-tool");
// By adding -c, we force the driver to treat compilation as the last phase.
// It will then issue warnings via Diagnostics about un-used options that
// would have been used for linking. If the user provided a compiler name as
// the original argv[0], this will be treated as a linker input thanks to
// insertng a new argv[0] above. All un-used options get collected by
// UnusedInputdiagConsumer and get stripped out later.
Args.push_back("-c");
// Put a dummy C++ file on to ensure there's at least one compile job for the
// driver to construct. If the user specified some other argument that
// prevents compilation, e.g. -E or something like -version, we may still end
// up with no jobs but then this is the user's fault.
Args.push_back("placeholder.cpp");
// Remove -no-integrated-as; it's not used for syntax checking,
// and it confuses targets which don't support this option.
Args.erase(std::remove_if(Args.begin(), Args.end(),
MatchesAny(std::string("-no-integrated-as"))),
Args.end());
const std::unique_ptr<driver::Compilation> Compilation(
NewDriver->BuildCompilation(Args));
const driver::JobList &Jobs = Compilation->getJobs();
CompileJobAnalyzer CompileAnalyzer;
for (driver::JobList::const_iterator I = Jobs.begin(), E = Jobs.end(); I != E;
++I) {
if ((*I)->getKind() == driver::Job::CommandClass) {
const driver::Command *Cmd = cast<driver::Command>(*I);
// Collect only for Assemble jobs. If we do all jobs we get duplicates
// since Link jobs point to Assemble jobs as inputs.
if (Cmd->getSource().getKind() == driver::Action::AssembleJobClass)
CompileAnalyzer.run(&Cmd->getSource());
}
}
if (CompileAnalyzer.Inputs.empty()) {
// No compile jobs found.
// FIXME: Emit a warning of some kind?
return false;
}
// Remove all compilation input files from the command line. This is
// necessary so that getCompileCommands() can construct a command line for
// each file.
std::vector<const char *>::iterator End = std::remove_if(
Args.begin(), Args.end(), MatchesAny(CompileAnalyzer.Inputs));
// Remove all inputs deemed unused for compilation.
End = std::remove_if(Args.begin(), End, MatchesAny(DiagClient.UnusedInputs));
// Remove the -c add above as well. It will be at the end right now.
assert(strcmp(*(End - 1), "-c") == 0);
--End;
Result = std::vector<std::string>(Args.begin() + 1, End);
return true;
}
// Returns true on error.
static bool format(StringRef FileName) {
ErrorOr<std::unique_ptr<MemoryBuffer>> CodeOrErr =
MemoryBuffer::getFileOrSTDIN(FileName);
if (std::error_code EC = CodeOrErr.getError()) {
errs() << EC.message() << "\n";
return true;
}
std::unique_ptr<llvm::MemoryBuffer> Code = std::move(CodeOrErr.get());
if (Code->getBufferSize() == 0)
return false; // Empty files are formatted correctly.
std::vector<tooling::Range> Ranges;
if (fillRanges(Code.get(), Ranges))
return true;
StringRef AssumedFileName = (FileName == "-") ? AssumeFileName : FileName;
FormatStyle FormatStyle = getStyle(Style, AssumedFileName, FallbackStyle);
if (SortIncludes.getNumOccurrences() != 0)
FormatStyle.SortIncludes = SortIncludes;
unsigned CursorPosition = Cursor;
Replacements Replaces = sortIncludes(FormatStyle, Code->getBuffer(), Ranges,
AssumedFileName, &CursorPosition);
auto ChangedCode = tooling::applyAllReplacements(Code->getBuffer(), Replaces);
if (!ChangedCode) {
llvm::errs() << llvm::toString(ChangedCode.takeError()) << "\n";
return true;
}
for (const auto &R : Replaces)
Ranges.push_back({R.getOffset(), R.getLength()});
bool IncompleteFormat = false;
Replacements FormatChanges = reformat(FormatStyle, *ChangedCode, Ranges,
AssumedFileName, &IncompleteFormat);
Replaces = tooling::mergeReplacements(Replaces, FormatChanges);
if (OutputXML) {
outs() << "<?xml version='1.0'?>\n<replacements "
"xml:space='preserve' incomplete_format='"
<< (IncompleteFormat ? "true" : "false") << "'>\n";
if (Cursor.getNumOccurrences() != 0)
outs() << "<cursor>"
<< tooling::shiftedCodePosition(FormatChanges, CursorPosition)
<< "</cursor>\n";
outputReplacementsXML(Replaces);
outs() << "</replacements>\n";
} else {
IntrusiveRefCntPtr<vfs::InMemoryFileSystem> InMemoryFileSystem(
new vfs::InMemoryFileSystem);
FileManager Files(FileSystemOptions(), InMemoryFileSystem);
DiagnosticsEngine Diagnostics(
IntrusiveRefCntPtr<DiagnosticIDs>(new DiagnosticIDs),
new DiagnosticOptions);
SourceManager Sources(Diagnostics, Files);
FileID ID = createInMemoryFile(AssumedFileName, Code.get(), Sources, Files,
InMemoryFileSystem.get());
Rewriter Rewrite(Sources, LangOptions());
tooling::applyAllReplacements(Replaces, Rewrite);
if (Inplace) {
if (FileName == "-")
errs() << "error: cannot use -i when reading from stdin.\n";
else if (Rewrite.overwriteChangedFiles())
return true;
} else {
if (Cursor.getNumOccurrences() != 0)
outs() << "{ \"Cursor\": "
<< tooling::shiftedCodePosition(FormatChanges, CursorPosition)
<< ", \"IncompleteFormat\": "
<< (IncompleteFormat ? "true" : "false") << " }\n";
Rewrite.getEditBuffer(ID).write(outs());
}
}
return false;
}
static bool fillRanges(MemoryBuffer *Code,
std::vector<tooling::Range> &Ranges) {
IntrusiveRefCntPtr<vfs::InMemoryFileSystem> InMemoryFileSystem(
new vfs::InMemoryFileSystem);
FileManager Files(FileSystemOptions(), InMemoryFileSystem);
DiagnosticsEngine Diagnostics(
IntrusiveRefCntPtr<DiagnosticIDs>(new DiagnosticIDs),
new DiagnosticOptions);
SourceManager Sources(Diagnostics, Files);
FileID ID = createInMemoryFile("<irrelevant>", Code, Sources, Files,
InMemoryFileSystem.get());
if (!LineRanges.empty()) {
if (!Offsets.empty() || !Lengths.empty()) {
errs() << "error: cannot use -lines with -offset/-length\n";
return true;
}
for (unsigned i = 0, e = LineRanges.size(); i < e; ++i) {
unsigned FromLine, ToLine;
if (parseLineRange(LineRanges[i], FromLine, ToLine)) {
errs() << "error: invalid <start line>:<end line> pair\n";
return true;
}
if (FromLine > ToLine) {
errs() << "error: start line should be less than end line\n";
return true;
}
SourceLocation Start = Sources.translateLineCol(ID, FromLine, 1);
SourceLocation End = Sources.translateLineCol(ID, ToLine, UINT_MAX);
if (Start.isInvalid() || End.isInvalid())
return true;
unsigned Offset = Sources.getFileOffset(Start);
unsigned Length = Sources.getFileOffset(End) - Offset;
Ranges.push_back(tooling::Range(Offset, Length));
}
return false;
}
if (Offsets.empty())
Offsets.push_back(0);
if (Offsets.size() != Lengths.size() &&
!(Offsets.size() == 1 && Lengths.empty())) {
errs() << "error: number of -offset and -length arguments must match.\n";
return true;
}
for (unsigned i = 0, e = Offsets.size(); i != e; ++i) {
if (Offsets[i] >= Code->getBufferSize()) {
errs() << "error: offset " << Offsets[i] << " is outside the file\n";
return true;
}
SourceLocation Start =
Sources.getLocForStartOfFile(ID).getLocWithOffset(Offsets[i]);
SourceLocation End;
if (i < Lengths.size()) {
if (Offsets[i] + Lengths[i] > Code->getBufferSize()) {
errs() << "error: invalid length " << Lengths[i]
<< ", offset + length (" << Offsets[i] + Lengths[i]
<< ") is outside the file.\n";
return true;
}
End = Start.getLocWithOffset(Lengths[i]);
} else {
End = Sources.getLocForEndOfFile(ID);
}
unsigned Offset = Sources.getFileOffset(Start);
unsigned Length = Sources.getFileOffset(End) - Offset;
Ranges.push_back(tooling::Range(Offset, Length));
}
return false;
}
// Returns true on error.
static bool format(StringRef FileName) {
if (!OutputXML && Inplace && FileName == "-") {
errs() << "error: cannot use -i when reading from stdin.\n";
return false;
}
// On Windows, overwriting a file with an open file mapping doesn't work,
// so read the whole file into memory when formatting in-place.
ErrorOr<std::unique_ptr<MemoryBuffer>> CodeOrErr =
!OutputXML && Inplace ? MemoryBuffer::getFileAsStream(FileName) :
MemoryBuffer::getFileOrSTDIN(FileName);
if (std::error_code EC = CodeOrErr.getError()) {
errs() << EC.message() << "\n";
return true;
}
std::unique_ptr<llvm::MemoryBuffer> Code = std::move(CodeOrErr.get());
if (Code->getBufferSize() == 0)
return false; // Empty files are formatted correctly.
std::vector<tooling::Range> Ranges;
if (fillRanges(Code.get(), Ranges))
return true;
StringRef AssumedFileName = (FileName == "-") ? AssumeFileName : FileName;
llvm::Expected<FormatStyle> FormatStyle =
getStyle(Style, AssumedFileName, FallbackStyle, Code->getBuffer());
if (!FormatStyle) {
llvm::errs() << llvm::toString(FormatStyle.takeError()) << "\n";
return true;
}
if (SortIncludes.getNumOccurrences() != 0)
FormatStyle->SortIncludes = SortIncludes;
unsigned CursorPosition = Cursor;
Replacements Replaces = sortIncludes(*FormatStyle, Code->getBuffer(), Ranges,
AssumedFileName, &CursorPosition);
auto ChangedCode = tooling::applyAllReplacements(Code->getBuffer(), Replaces);
if (!ChangedCode) {
llvm::errs() << llvm::toString(ChangedCode.takeError()) << "\n";
return true;
}
// Get new affected ranges after sorting `#includes`.
Ranges = tooling::calculateRangesAfterReplacements(Replaces, Ranges);
FormattingAttemptStatus Status;
Replacements FormatChanges = reformat(*FormatStyle, *ChangedCode, Ranges,
AssumedFileName, &Status);
Replaces = Replaces.merge(FormatChanges);
if (OutputXML) {
outs() << "<?xml version='1.0'?>\n<replacements "
"xml:space='preserve' incomplete_format='"
<< (Status.FormatComplete ? "false" : "true") << "'";
if (!Status.FormatComplete)
outs() << " line='" << Status.Line << "'";
outs() << ">\n";
if (Cursor.getNumOccurrences() != 0)
outs() << "<cursor>"
<< FormatChanges.getShiftedCodePosition(CursorPosition)
<< "</cursor>\n";
outputReplacementsXML(Replaces);
outs() << "</replacements>\n";
} else {
IntrusiveRefCntPtr<vfs::InMemoryFileSystem> InMemoryFileSystem(
new vfs::InMemoryFileSystem);
FileManager Files(FileSystemOptions(), InMemoryFileSystem);
DiagnosticsEngine Diagnostics(
IntrusiveRefCntPtr<DiagnosticIDs>(new DiagnosticIDs),
new DiagnosticOptions);
SourceManager Sources(Diagnostics, Files);
FileID ID = createInMemoryFile(AssumedFileName, Code.get(), Sources, Files,
InMemoryFileSystem.get());
Rewriter Rewrite(Sources, LangOptions());
tooling::applyAllReplacements(Replaces, Rewrite);
if (Inplace) {
if (Rewrite.overwriteChangedFiles())
return true;
} else {
if (Cursor.getNumOccurrences() != 0) {
outs() << "{ \"Cursor\": "
<< FormatChanges.getShiftedCodePosition(CursorPosition)
<< ", \"IncompleteFormat\": "
<< (Status.FormatComplete ? "false" : "true");
if (!Status.FormatComplete)
outs() << ", \"Line\": " << Status.Line;
outs() << " }\n";
}
Rewrite.getEditBuffer(ID).write(outs());
}
}
return false;
}
InflatedHeaders()
: allocator_(new Allocator<InflatedHeader>())
, diagnostics_(Diagnostics())
{}
