/*
******** tenGradientJitter
**
** moves all gradients by amount dist on tangent plane, in a random
** direction, and then renormalizes. The distance is a fraction
** of the ideal edge length (via tenGradientIdealEdge)
*/
int
tenGradientJitter(Nrrd *nout, const Nrrd *nin, double dist) {
static const char me[]="tenGradientJitter";
double *grad, perp0[3], perp1[3], len, theta, cc, ss, edge;
unsigned int gi, num;
if (nrrdConvert(nout, nin, nrrdTypeDouble)) {
biffMovef(TEN, NRRD, "%s: trouble converting input to double", me);
return 1;
}
if (tenGradientCheck(nout, nrrdTypeDouble, 3)) {
biffAddf(TEN, "%s: didn't get valid gradients", me);
return 1;
}
grad = AIR_CAST(double*, nout->data);
num = AIR_UINT(nout->axis[1].size);
/* HEY: possible confusion between single and not */
edge = tenGradientIdealEdge(num, AIR_FALSE);
for (gi=0; gi<num; gi++) {
ELL_3V_NORM(grad, grad, len);
ell_3v_perp_d(perp0, grad);
ELL_3V_CROSS(perp1, perp0, grad);
theta = AIR_AFFINE(0, airDrandMT(), 1, 0, 2*AIR_PI);
cc = dist*edge*cos(theta);
ss = dist*edge*sin(theta);
ELL_3V_SCALE_ADD3(grad, 1.0, grad, cc, perp0, ss, perp1);
ELL_3V_NORM(grad, grad, len);
grad += 3;
}
return 0;
}
void
testeigen(double tt[7], double eval[3], double evec[9]) {
double mat[9], dot[3], cross[3];
unsigned int ii;
TEN_T2M(mat, tt);
printf("evals %g %g %g\n", eval[0], eval[1], eval[2]);
printf("evec0 (%g) %g %g %g\n",
ELL_3V_LEN(evec + 0), evec[0], evec[1], evec[2]);
printf("evec1 (%g) %g %g %g\n",
ELL_3V_LEN(evec + 3), evec[3], evec[4], evec[5]);
printf("evec2 (%g) %g %g %g\n",
ELL_3V_LEN(evec + 6), evec[6], evec[7], evec[8]);
printf("Mv - lv: (len) X Y Z (should be ~zeros)\n");
for (ii=0; ii<3; ii++) {
double uu[3], vv[3], dd[3];
ELL_3MV_MUL(uu, mat, evec + 3*ii);
ELL_3V_SCALE(vv, eval[ii], evec + 3*ii);
ELL_3V_SUB(dd, uu, vv);
printf("%d: (%g) %g %g %g\n", ii, ELL_3V_LEN(dd), dd[0], dd[1], dd[2]);
}
dot[0] = ELL_3V_DOT(evec + 0, evec + 3);
dot[1] = ELL_3V_DOT(evec + 0, evec + 6);
dot[2] = ELL_3V_DOT(evec + 3, evec + 6);
printf("pairwise dots: (%g) %g %g %g\n",
ELL_3V_LEN(dot), dot[0], dot[1], dot[2]);
ELL_3V_CROSS(cross, evec+0, evec+3);
printf("right-handed: %g\n", ELL_3V_DOT(evec+6, cross));
return;
}
/*
** makes sure that v+3*2 has a positive dot product with
** cross product of v+3*0 and v+3*1
*/
void
_ell_3m_make_right_handed_d(double v[9]) {
double x[3];
ELL_3V_CROSS(x, v+3*0, v+3*1);
if (0 > ELL_3V_DOT(x, v+3*2)) {
ELL_3V_SCALE(v+3*2, -1, v+3*2);
}
}
/*
******** ell_3m_1d_nullspace_d()
**
** the given matrix is assumed to have a nullspace of dimension one.
** A normalized vector which spans the nullspace is put into ans.
**
** The given nullspace matrix is NOT modified.
**
** This does NOT use biff
*/
void
ell_3m_1d_nullspace_d(double ans[3], const double _n[9]) {
double t[9], n[9], norm;
ELL_3M_TRANSPOSE(n, _n);
/* find the three cross-products of pairs of column vectors of n */
ELL_3V_CROSS(t+0, n+0, n+3);
ELL_3V_CROSS(t+3, n+0, n+6);
ELL_3V_CROSS(t+6, n+3, n+6);
/* lop A */
_ell_align3_d(t);
/* lop B */
/* add them up (longer, hence more accurate, should dominate) */
ELL_3V_ADD3(ans, t+0, t+3, t+6);
/* normalize */
ELL_3V_NORM(ans, ans, norm);
return;
}
/* Estimates the shortest distance from a point to a line going
through the origin */
double
_tenPldist( const double point[], const double line[] ) {
double cross[3];
double negpoint[3];
negpoint[0] = -point[0];
negpoint[1] = -point[1];
negpoint[2] = -point[2];
ELL_3V_CROSS( cross, line, negpoint );
return ELL_3V_LEN( cross ) / ELL_3V_LEN( line );
}
int
_echoRayIntx_TriMesh(RAYINTX_ARGS(TriMesh)) {
echoPos_t *pos, vert0[3], edge0[3], edge1[3], pvec[3], qvec[3], tvec[3],
det, t, tmax, u, v, tmp;
echoTriMesh *trim;
int i, ret;
AIR_UNUSED(parm);
trim = TRIMESH(obj);
if (!_echoRayIntx_CubeSolid(&t, &tmax,
trim->min[0], trim->max[0],
trim->min[1], trim->max[1],
trim->min[2], trim->max[2], ray)) {
if (tstate->verbose) {
fprintf(stderr, "%s%s: trimesh bbox (%g,%g,%g) --> (%g,%g,%g) not hit\n",
_echoDot(tstate->depth), "_echoRayIntx_TriMesh",
trim->min[0], trim->min[1], trim->min[2],
trim->max[0], trim->max[1], trim->max[2]);
}
return AIR_FALSE;
}
/* stupid linear search for now */
ret = AIR_FALSE;
for (i=0; i<trim->numF; i++) {
pos = trim->pos + 3*trim->vert[0 + 3*i];
ELL_3V_COPY(vert0, pos);
pos = trim->pos + 3*trim->vert[1 + 3*i];
ELL_3V_SUB(edge0, pos, vert0);
pos = trim->pos + 3*trim->vert[2 + 3*i];
ELL_3V_SUB(edge1, pos, vert0);
TRI_INTX(ray, vert0, edge0, edge1,
pvec, qvec, tvec, det, t, u, v,
(v < 0.0 || u + v > 1.0), continue);
if (ray->shadow) {
return AIR_TRUE;
}
intx->t = ray->faar = t;
ELL_3V_CROSS(intx->norm, edge0, edge1);
ELL_3V_NORM(intx->norm, intx->norm, tmp);
intx->obj = (echoObject *)obj;
intx->face = i;
ret = AIR_TRUE;
}
/* does NOT set u, v */
return ret;
}
/*
******** ell_3m_2d_nullspace_d()
**
** the given matrix is assumed to have a nullspace of dimension two.
**
** The given nullspace matrix is NOT modified
**
** This does NOT use biff
*/
void
ell_3m_2d_nullspace_d(double ans0[3], double ans1[3], const double _n[9]) {
double n[9], tmp[3], norm;
ELL_3M_TRANSPOSE(n, _n);
_ell_align3_d(n);
ELL_3V_ADD3(tmp, n+0, n+3, n+6);
ELL_3V_NORM(tmp, tmp, norm);
/* any two vectors which are perpendicular to the (supposedly 1D)
span of the column vectors span the nullspace */
ell_3v_perp_d(ans0, tmp);
ELL_3V_NORM(ans0, ans0, norm);
ELL_3V_CROSS(ans1, tmp, ans0);
return;
}
/*
** NOTE: assumes that eval and roots have come from
** ell_3m2sub_eigenvalues_d(m)
*/
void
_ell_3m2sub_evecs_d(double evec[9], double eval[3], int roots,
const double m[9]) {
double n[4];
static const char me[]="_ell_3m2sub_evecs_d";
if (ell_cubic_root_three == roots) {
/* set off-diagonal entries once */
n[1] = m[1];
n[2] = m[3];
/* find first evec */
n[0] = m[0] - eval[0];
n[3] = m[3] - eval[0];
ell_2m_1d_nullspace_d(evec + 3*0, n);
(evec + 3*0)[2] = 0;
/* find second evec */
n[0] = m[0] - eval[1];
n[3] = m[3] - eval[1];
ell_2m_1d_nullspace_d(evec + 3*1, n);
(evec + 3*1)[2] = 0;
_ell_22v_enforce_orthogonality(evec + 3*0, evec + 3*1);
/* make right-handed */
ELL_3V_CROSS(evec + 3*2, evec + 3*0, evec + 3*1);
} else if (ell_cubic_root_single_double == roots) {
/* can pick any 2D basis */
ELL_3V_SET(evec + 3*0, 1, 0, 0);
ELL_3V_SET(evec + 3*1, 0, 1, 0);
ELL_3V_SET(evec + 3*2, 0, 0, 1);
} else {
/* ell_cubic_root_single == roots, if assumptions are met */
ELL_3V_SET(evec + 3*0, AIR_NAN, AIR_NAN, 0);
ELL_3V_SET(evec + 3*1, AIR_NAN, AIR_NAN, 0);
ELL_3V_SET(evec + 3*2, 0, 0, 1);
}
if (!ELL_3M_EXISTS(evec)) {
fprintf(stderr, "%s: given m = \n", me);
ell_3m_print_d(stderr, m);
fprintf(stderr, "%s: got roots = %s (%d) and evecs = \n", me,
airEnumStr(ell_cubic_root, roots), roots);
ell_3m_print_d(stderr, evec);
}
return;
}
int
_echoRayIntx_Triangle(RAYINTX_ARGS(Triangle)) {
echoPos_t pvec[3], qvec[3], tvec[3], det, t, u, v, edge0[3], edge1[3], tmp;
AIR_UNUSED(parm);
AIR_UNUSED(tstate);
ELL_3V_SUB(edge0, obj->vert[1], obj->vert[0]);
ELL_3V_SUB(edge1, obj->vert[2], obj->vert[0]);
TRI_INTX(ray, obj->vert[0], edge0, edge1,
pvec, qvec, tvec, det, t, u, v,
(v < 0.0 || u + v > 1.0), return AIR_FALSE);
intx->t = t;
intx->u = u;
intx->v = v;
ELL_3V_CROSS(intx->norm, edge0, edge1);
ELL_3V_NORM(intx->norm, intx->norm, tmp);
intx->obj = (echoObject *)obj;
/* DOES set u, v */
return AIR_TRUE;
}
int
_echoRayIntx_Rectangle(RAYINTX_ARGS(Rectangle)) {
echoPos_t pvec[3], qvec[3], tvec[3], det, t, u, v, *edge0, *edge1, tmp;
AIR_UNUSED(tstate);
if (echoMatterLight == obj->matter
&& (ray->shadow || !parm->renderLights)) {
return AIR_FALSE;
}
edge0 = obj->edge0;
edge1 = obj->edge1;
TRI_INTX(ray, obj->origin, edge0, edge1,
pvec, qvec, tvec, det, t, u, v,
(v < 0.0 || v > 1.0), return AIR_FALSE);
intx->t = t;
intx->u = u;
intx->v = v;
ELL_3V_CROSS(intx->norm, edge0, edge1);
ELL_3V_NORM(intx->norm, intx->norm, tmp);
intx->obj = OBJECT(obj);
/* DOES set u, v */
return AIR_TRUE;
}
void
tend_helixDoit(Nrrd *nout, double bnd,
double orig[3], double i2w[9], double mf[9],
double r, double R, double S, double angle, int incrtwist,
double ev[3], double bgEval) {
int sx, sy, sz, xi, yi, zi;
double th, t0, t1, t2, t3, v1, v2,
wpos[3], vpos[3], mfT[9],
W2H[9], H2W[9], H2C[9], C2H[9], fv[3], rv[3], uv[3], mA[9], mB[9], inside,
tmp[3], len;
float *out;
sx = nout->axis[1].size;
sy = nout->axis[2].size;
sz = nout->axis[3].size;
out = (float*)nout->data;
ELL_3M_TRANSPOSE(mfT, mf);
for (zi=0; zi<sz; zi++) {
fprintf(stderr, "zi = %d/%d\n", zi, sz);
for (yi=0; yi<sy; yi++) {
for (xi=0; xi<sx; xi++) {
ELL_3V_SET(tmp, xi, yi, zi);
ELL_3MV_MUL(vpos, i2w, tmp);
ELL_3V_INCR(vpos, orig);
#define WPOS(pos, th) ELL_3V_SET((pos),R*cos(th), R*sin(th), S*(th)/(2*AIR_PI))
#define VAL(th) (WPOS(wpos, th), ELL_3V_DIST(wpos, vpos))
#define RR 0.61803399
#define CC (1.0-RR)
#define SHIFT3(a,b,c,d) (a)=(b); (b)=(c); (c)=(d)
#define SHIFT2(a,b,c) (a)=(b); (b)=(c)
th = atan2(vpos[1], vpos[0]);
th += 2*AIR_PI*floor(0.5 + vpos[2]/S - th/(2*AIR_PI));
if (S*th/(2*AIR_PI) > vpos[2]) {
t0 = th - AIR_PI; t3 = th;
} else {
t0 = th; t3 = th + AIR_PI;
}
t1 = RR*t0 + CC*t3;
t2 = CC*t0 + RR*t3;
v1 = VAL(t1);
v2 = VAL(t2);
while ( t3-t0 > 0.000001*(AIR_ABS(t1)+AIR_ABS(t2)) ) {
if (v1 < v2) {
SHIFT3(t3, t2, t1, CC*t0 + RR*t2);
SHIFT2(v2, v1, VAL(t1));
} else {
SHIFT3(t0, t1, t2, RR*t1 + CC*t3);
SHIFT2(v1, v2, VAL(t2));
}
}
/* t1 (and t2) are now the th for which the point on the helix
(R*cos(th), R*sin(th), S*(th)/(2*AIR_PI)) is closest to vpos */
WPOS(wpos, t1);
ELL_3V_SUB(wpos, vpos, wpos);
ELL_3V_SET(fv, -R*sin(t1), R*cos(t1), S/AIR_PI); /* helix tangent */
ELL_3V_NORM(fv, fv, len);
ELL_3V_COPY(rv, wpos);
ELL_3V_NORM(rv, rv, len);
len = ELL_3V_DOT(rv, fv);
ELL_3V_SCALE(tmp, -len, fv);
ELL_3V_ADD2(rv, rv, tmp);
ELL_3V_NORM(rv, rv, len); /* rv now normal to helix, closest to
pointing to vpos */
ELL_3V_CROSS(uv, rv, fv);
ELL_3V_NORM(uv, uv, len); /* (rv,fv,uv) now right-handed frame */
ELL_3MV_ROW0_SET(W2H, uv); /* as is (uv,rv,fv) */
ELL_3MV_ROW1_SET(W2H, rv);
ELL_3MV_ROW2_SET(W2H, fv);
ELL_3M_TRANSPOSE(H2W, W2H);
inside = 0.5 - 0.5*airErf((ELL_3V_LEN(wpos)-r)/(bnd + 0.0001));
if (incrtwist) {
th = angle*ELL_3V_LEN(wpos)/r;
} else {
th = angle;
}
ELL_3M_ROTATE_Y_SET(H2C, th);
ELL_3M_TRANSPOSE(C2H, H2C);
ELL_3M_SCALE_SET(mA,
AIR_LERP(inside, bgEval, ev[1]),
AIR_LERP(inside, bgEval, ev[2]),
AIR_LERP(inside, bgEval, ev[0]));
ELL_3M_MUL(mB, mA, H2C);
ELL_3M_MUL(mA, mB, W2H);
ELL_3M_MUL(mB, mA, mf);
ELL_3M_MUL(mA, C2H, mB);
ELL_3M_MUL(mB, H2W, mA);
ELL_3M_MUL(mA, mfT, mB);
TEN_M2T_TT(out, float, mA);
out[0] = 1.0;
out += 7;
}
}
}
return;
}
int
tenGlyphGen(limnObject *glyphsLimn, echoScene *glyphsEcho,
tenGlyphParm *parm,
const Nrrd *nten, const Nrrd *npos, const Nrrd *nslc) {
static const char me[]="tenGlyphGen";
gageShape *shape;
airArray *mop;
float *tdata, eval[3], evec[9], *cvec, rotEvec[9], mA_f[16],
absEval[3], glyphScl[3];
double pI[3], pW[3], cl, cp, sRot[16], mA[16], mB[16], msFr[9], tmpvec[3],
R, G, B, qA, qB, qC, glyphAniso, sliceGray;
unsigned int duh;
int slcCoord[3], idx, glyphIdx, axis, numGlyphs,
svRGBAfl=AIR_FALSE;
limnLook *look; int lookIdx;
echoObject *eglyph, *inst, *list=NULL, *split, *esquare;
echoPos_t eM[16], originOffset[3], edge0[3], edge1[3];
char stmp[AIR_STRLEN_SMALL];
/*
int eret;
double tmp1[3], tmp2[3];
*/
if (!( (glyphsLimn || glyphsEcho) && nten && parm)) {
biffAddf(TEN, "%s: got NULL pointer", me);
return 1;
}
mop = airMopNew();
shape = gageShapeNew();
shape->defaultCenter = nrrdCenterCell;
airMopAdd(mop, shape, (airMopper)gageShapeNix, airMopAlways);
if (npos) {
if (!( 2 == nten->dim && 7 == nten->axis[0].size )) {
biffAddf(TEN, "%s: nten isn't 2-D 7-by-N array", me);
airMopError(mop); return 1;
}
if (!( 2 == npos->dim && 3 == npos->axis[0].size
&& nten->axis[1].size == npos->axis[1].size )) {
biffAddf(TEN, "%s: npos isn't 2-D 3-by-%s array", me,
airSprintSize_t(stmp, nten->axis[1].size));
airMopError(mop); return 1;
}
if (!( nrrdTypeFloat == nten->type && nrrdTypeFloat == npos->type )) {
biffAddf(TEN, "%s: nten and npos must be %s, not %s and %s", me,
airEnumStr(nrrdType, nrrdTypeFloat),
airEnumStr(nrrdType, nten->type),
airEnumStr(nrrdType, npos->type));
airMopError(mop); return 1;
}
} else {
if (tenTensorCheck(nten, nrrdTypeFloat, AIR_TRUE, AIR_TRUE)) {
biffAddf(TEN, "%s: didn't get a valid DT volume", me);
airMopError(mop); return 1;
}
}
if (tenGlyphParmCheck(parm, nten, npos, nslc)) {
biffAddf(TEN, "%s: trouble", me);
airMopError(mop); return 1;
}
if (!npos) {
if (gageShapeSet(shape, nten, tenGageKind->baseDim)) {
biffMovef(TEN, GAGE, "%s: trouble", me);
airMopError(mop); return 1;
}
}
if (parm->doSlice) {
ELL_3V_COPY(edge0, shape->spacing);
ELL_3V_COPY(edge1, shape->spacing);
edge0[parm->sliceAxis] = edge1[parm->sliceAxis] = 0.0;
switch(parm->sliceAxis) {
case 0:
edge0[1] = edge1[2] = 0;
ELL_4M_ROTATE_Y_SET(sRot, AIR_PI/2);
break;
case 1:
edge0[0] = edge1[2] = 0;
ELL_4M_ROTATE_X_SET(sRot, AIR_PI/2);
break;
case 2: default:
edge0[0] = edge1[1] = 0;
ELL_4M_IDENTITY_SET(sRot);
break;
}
ELL_3V_COPY(originOffset, shape->spacing);
ELL_3V_SCALE(originOffset, -0.5, originOffset);
originOffset[parm->sliceAxis] *= -2*parm->sliceOffset;
}
if (glyphsLimn) {
/* create limnLooks for diffuse and ambient-only shading */
/* ??? */
/* hack: save old value of setVertexRGBAFromLook, and set to true */
svRGBAfl = glyphsLimn->setVertexRGBAFromLook;
glyphsLimn->setVertexRGBAFromLook = AIR_TRUE;
}
if (glyphsEcho) {
list = echoObjectNew(glyphsEcho, echoTypeList);
}
if (npos) {
numGlyphs = AIR_UINT(nten->axis[1].size);
} else {
numGlyphs = shape->size[0] * shape->size[1] * shape->size[2];
}
/* find measurement frame transform */
if (3 == nten->spaceDim
&& AIR_EXISTS(nten->measurementFrame[0][0])) {
/* msFr nten->measurementFrame
** 0 1 2 [0][0] [1][0] [2][0]
** 3 4 5 [0][1] [1][1] [2][1]
** 6 7 8 [0][2] [1][2] [2][2]
*/
msFr[0] = nten->measurementFrame[0][0];
msFr[3] = nten->measurementFrame[0][1];
msFr[6] = nten->measurementFrame[0][2];
msFr[1] = nten->measurementFrame[1][0];
msFr[4] = nten->measurementFrame[1][1];
msFr[7] = nten->measurementFrame[1][2];
msFr[2] = nten->measurementFrame[2][0];
msFr[5] = nten->measurementFrame[2][1];
msFr[8] = nten->measurementFrame[2][2];
} else {
ELL_3M_IDENTITY_SET(msFr);
}
for (idx=0; idx<numGlyphs; idx++) {
tdata = (float*)(nten->data) + 7*idx;
if (parm->verbose >= 2) {
fprintf(stderr, "%s: glyph %d/%d: hello %g %g %g %g %g %g %g\n",
me, idx, numGlyphs, tdata[0],
tdata[1], tdata[2], tdata[3],
tdata[4], tdata[5], tdata[6]);
}
if (!( TEN_T_EXISTS(tdata) )) {
/* there's nothing we can do here */
if (parm->verbose >= 2) {
fprintf(stderr, "%s: glyph %d/%d: non-existent data\n",
me, idx, numGlyphs);
}
continue;
}
if (npos) {
ELL_3V_COPY(pW, (float*)(npos->data) + 3*idx);
if (!( AIR_EXISTS(pW[0]) && AIR_EXISTS(pW[1]) && AIR_EXISTS(pW[2]) )) {
/* position doesn't exist- perhaps because its from the push
library, which might kill points by setting coords to nan */
continue;
}
} else {
NRRD_COORD_GEN(pI, shape->size, 3, idx);
/* this does take into account full orientation */
gageShapeItoW(shape, pW, pI);
if (parm->nmask) {
if (!( nrrdFLookup[parm->nmask->type](parm->nmask->data, idx)
>= parm->maskThresh )) {
if (parm->verbose >= 2) {
fprintf(stderr, "%s: glyph %d/%d: doesn't meet mask thresh\n",
me, idx, numGlyphs);
}
continue;
}
}
}
tenEigensolve_f(eval, evec, tdata);
/* transform eigenvectors by measurement frame */
ELL_3MV_MUL(tmpvec, msFr, evec + 0);
ELL_3V_COPY_TT(evec + 0, float, tmpvec);
ELL_3MV_MUL(tmpvec, msFr, evec + 3);
ELL_3V_COPY_TT(evec + 3, float, tmpvec);
ELL_3MV_MUL(tmpvec, msFr, evec + 6);
ELL_3V_COPY_TT(evec + 6, float, tmpvec);
ELL_3V_CROSS(tmpvec, evec + 0, evec + 3);
if (0 > ELL_3V_DOT(tmpvec, evec + 6)) {
ELL_3V_SCALE(evec + 6, -1, evec + 6);
}
ELL_3M_TRANSPOSE(rotEvec, evec);
if (parm->doSlice
&& pI[parm->sliceAxis] == parm->slicePos) {
/* set sliceGray */
if (nslc) {
/* we aren't masked by confidence, as anisotropy slice is */
for (duh=0; duh<parm->sliceAxis; duh++) {
slcCoord[duh] = (int)(pI[duh]);
}
for (duh=duh<parm->sliceAxis; duh<2; duh++) {
slcCoord[duh] = (int)(pI[duh+1]);
}
/* HEY: GLK has no idea what's going here */
slcCoord[0] = (int)(pI[0]);
slcCoord[1] = (int)(pI[1]);
slcCoord[2] = (int)(pI[2]);
sliceGray =
nrrdFLookup[nslc->type](nslc->data, slcCoord[0]
+ nslc->axis[0].size*slcCoord[1]);
} else {
if (!( tdata[0] >= parm->confThresh )) {
if (parm->verbose >= 2) {
fprintf(stderr, "%s: glyph %d/%d (slice): conf %g < thresh %g\n",
me, idx, numGlyphs, tdata[0], parm->confThresh);
}
continue;
}
sliceGray = tenAnisoEval_f(eval, parm->sliceAnisoType);
}
if (parm->sliceGamma > 0) {
sliceGray = AIR_AFFINE(0, sliceGray, 1, parm->sliceBias, 1);
sliceGray = pow(sliceGray, 1.0/parm->sliceGamma);
} else {
sliceGray = AIR_AFFINE(0, sliceGray, 1, 0, 1-parm->sliceBias);
sliceGray = 1.0 - pow(sliceGray, -1.0/parm->sliceGamma);
}
/* make slice contribution */
/* HEY: this is *NOT* aware of shape->fromOrientation */
if (glyphsLimn) {
lookIdx = limnObjectLookAdd(glyphsLimn);
look = glyphsLimn->look + lookIdx;
ELL_4V_SET_TT(look->rgba, float, sliceGray, sliceGray, sliceGray, 1);
ELL_3V_SET(look->kads, 1, 0, 0);
look->spow = 0;
glyphIdx = limnObjectSquareAdd(glyphsLimn, lookIdx);
ELL_4M_IDENTITY_SET(mA);
ell_4m_post_mul_d(mA, sRot);
if (!npos) {
ELL_4M_SCALE_SET(mB,
shape->spacing[0],
shape->spacing[1],
shape->spacing[2]);
}
ell_4m_post_mul_d(mA, mB);
ELL_4M_TRANSLATE_SET(mB, pW[0], pW[1], pW[2]);
ell_4m_post_mul_d(mA, mB);
ELL_4M_TRANSLATE_SET(mB,
originOffset[0],
originOffset[1],
originOffset[2]);
ell_4m_post_mul_d(mA, mB);
ELL_4M_COPY_TT(mA_f, float, mA);
limnObjectPartTransform(glyphsLimn, glyphIdx, mA_f);
}
if (glyphsEcho) {
esquare = echoObjectNew(glyphsEcho,echoTypeRectangle);
ELL_3V_ADD2(((echoRectangle*)esquare)->origin, pW, originOffset);
ELL_3V_COPY(((echoRectangle*)esquare)->edge0, edge0);
ELL_3V_COPY(((echoRectangle*)esquare)->edge1, edge1);
echoColorSet(esquare,
AIR_CAST(echoCol_t, sliceGray),
AIR_CAST(echoCol_t, sliceGray),
AIR_CAST(echoCol_t, sliceGray), 1);
/* this is pretty arbitrary- but I want shadows to have some effect.
Previously, the material was all ambient: (A,D,S) = (1,0,0),
which avoided all shadow effects. */
echoMatterPhongSet(glyphsEcho, esquare, 0.4f, 0.6f, 0, 40);
echoListAdd(list, esquare);
}
}
if (parm->onlyPositive) {
if (eval[2] < 0) {
/* didn't have all positive eigenvalues, its outta here */
if (parm->verbose >= 2) {
fprintf(stderr, "%s: glyph %d/%d: not all evals %g %g %g > 0\n",
me, idx, numGlyphs, eval[0], eval[1], eval[2]);
}
continue;
}
}
if (!( tdata[0] >= parm->confThresh )) {
if (parm->verbose >= 2) {
fprintf(stderr, "%s: glyph %d/%d: conf %g < thresh %g\n",
me, idx, numGlyphs, tdata[0], parm->confThresh);
}
continue;
}
if (!( tenAnisoEval_f(eval, parm->anisoType) >= parm->anisoThresh )) {
if (parm->verbose >= 2) {
fprintf(stderr, "%s: glyph %d/%d: aniso[%d] %g < thresh %g\n",
me, idx, numGlyphs, parm->anisoType,
tenAnisoEval_f(eval, parm->anisoType), parm->anisoThresh);
}
continue;
}
glyphAniso = tenAnisoEval_f(eval, parm->colAnisoType);
/*
fprintf(stderr, "%s: eret = %d; evals = %g %g %g\n", me,
eret, eval[0], eval[1], eval[2]);
ELL_3V_CROSS(tmp1, evec+0, evec+3); tmp2[0] = ELL_3V_LEN(tmp1);
ELL_3V_CROSS(tmp1, evec+0, evec+6); tmp2[1] = ELL_3V_LEN(tmp1);
ELL_3V_CROSS(tmp1, evec+3, evec+6); tmp2[2] = ELL_3V_LEN(tmp1);
fprintf(stderr, "%s: crosses = %g %g %g\n", me,
tmp2[0], tmp2[1], tmp2[2]);
*/
/* set transform (in mA) */
ELL_3V_ABS(absEval, eval);
ELL_4M_IDENTITY_SET(mA); /* reset */
ELL_3V_SCALE(glyphScl, parm->glyphScale, absEval); /* scale by evals */
ELL_4M_SCALE_SET(mB, glyphScl[0], glyphScl[1], glyphScl[2]);
ell_4m_post_mul_d(mA, mB);
ELL_43M_INSET(mB, rotEvec); /* rotate by evecs */
ell_4m_post_mul_d(mA, mB);
ELL_4M_TRANSLATE_SET(mB, pW[0], pW[1], pW[2]); /* translate */
ell_4m_post_mul_d(mA, mB);
/* set color (in R,G,B) */
cvec = evec + 3*(AIR_CLAMP(0, parm->colEvec, 2));
R = AIR_ABS(cvec[0]); /* standard mapping */
G = AIR_ABS(cvec[1]);
B = AIR_ABS(cvec[2]);
/* desaturate by colMaxSat */
R = AIR_AFFINE(0.0, parm->colMaxSat, 1.0, parm->colIsoGray, R);
G = AIR_AFFINE(0.0, parm->colMaxSat, 1.0, parm->colIsoGray, G);
B = AIR_AFFINE(0.0, parm->colMaxSat, 1.0, parm->colIsoGray, B);
/* desaturate some by anisotropy */
R = AIR_AFFINE(0.0, parm->colAnisoModulate, 1.0,
R, AIR_AFFINE(0.0, glyphAniso, 1.0, parm->colIsoGray, R));
G = AIR_AFFINE(0.0, parm->colAnisoModulate, 1.0,
G, AIR_AFFINE(0.0, glyphAniso, 1.0, parm->colIsoGray, G));
B = AIR_AFFINE(0.0, parm->colAnisoModulate, 1.0,
B, AIR_AFFINE(0.0, glyphAniso, 1.0, parm->colIsoGray, B));
/* clamp and do gamma */
R = AIR_CLAMP(0.0, R, 1.0);
G = AIR_CLAMP(0.0, G, 1.0);
B = AIR_CLAMP(0.0, B, 1.0);
R = pow(R, parm->colGamma);
G = pow(G, parm->colGamma);
B = pow(B, parm->colGamma);
/* find axis, and superquad exponents qA and qB */
if (eval[2] > 0) {
/* all evals positive */
cl = AIR_MIN(0.99, tenAnisoEval_f(eval, tenAniso_Cl1));
cp = AIR_MIN(0.99, tenAnisoEval_f(eval, tenAniso_Cp1));
if (cl > cp) {
axis = 0;
qA = pow(1-cp, parm->sqdSharp);
qB = pow(1-cl, parm->sqdSharp);
} else {
axis = 2;
qA = pow(1-cl, parm->sqdSharp);
qB = pow(1-cp, parm->sqdSharp);
}
qC = qB;
} else if (eval[0] < 0) {
/* all evals negative */
float aef[3];
aef[0] = absEval[2];
aef[1] = absEval[1];
aef[2] = absEval[0];
cl = AIR_MIN(0.99, tenAnisoEval_f(aef, tenAniso_Cl1));
cp = AIR_MIN(0.99, tenAnisoEval_f(aef, tenAniso_Cp1));
if (cl > cp) {
axis = 2;
qA = pow(1-cp, parm->sqdSharp);
qB = pow(1-cl, parm->sqdSharp);
} else {
axis = 0;
qA = pow(1-cl, parm->sqdSharp);
qB = pow(1-cp, parm->sqdSharp);
}
qC = qB;
} else {
#define OOSQRT2 0.70710678118654752440
#define OOSQRT3 0.57735026918962576451
/* double poleA[3]={OOSQRT3, OOSQRT3, OOSQRT3}; */
double poleB[3]={1, 0, 0};
double poleC[3]={OOSQRT2, OOSQRT2, 0};
double poleD[3]={OOSQRT3, -OOSQRT3, -OOSQRT3};
double poleE[3]={OOSQRT2, 0, -OOSQRT2};
double poleF[3]={OOSQRT3, OOSQRT3, -OOSQRT3};
double poleG[3]={0, -OOSQRT2, -OOSQRT2};
double poleH[3]={0, 0, -1};
/* double poleI[3]={-OOSQRT3, -OOSQRT3, -OOSQRT3}; */
double funk[3]={0,4,2}, thrn[3]={1,4,4};
double octa[3]={0,2,2}, cone[3]={1,2,2};
double evalN[3], tmp, bary[3];
double qq[3];
ELL_3V_NORM(evalN, eval, tmp);
if (eval[1] >= -eval[2]) {
/* inside B-F-C */
ell_3v_barycentric_spherical_d(bary, poleB, poleF, poleC, evalN);
ELL_3V_SCALE_ADD3(qq, bary[0], octa, bary[1], thrn, bary[2], cone);
axis = 2;
} else if (eval[0] >= -eval[2]) {
/* inside B-D-F */
if (eval[1] >= 0) {
/* inside B-E-F */
ell_3v_barycentric_spherical_d(bary, poleB, poleE, poleF, evalN);
ELL_3V_SCALE_ADD3(qq, bary[0], octa, bary[1], funk, bary[2], thrn);
axis = 2;
} else {
/* inside B-D-E */
ell_3v_barycentric_spherical_d(bary, poleB, poleD, poleE, evalN);
ELL_3V_SCALE_ADD3(qq, bary[0], cone, bary[1], thrn, bary[2], funk);
axis = 0;
}
} else if (eval[0] < -eval[1]) {
/* inside D-G-H */
ell_3v_barycentric_spherical_d(bary, poleD, poleG, poleH, evalN);
ELL_3V_SCALE_ADD3(qq, bary[0], thrn, bary[1], cone, bary[2], octa);
axis = 0;
} else if (eval[1] < 0) {
/* inside E-D-H */
ell_3v_barycentric_spherical_d(bary, poleE, poleD, poleH, evalN);
ELL_3V_SCALE_ADD3(qq, bary[0], funk, bary[1], thrn, bary[2], octa);
axis = 0;
} else {
/* inside F-E-H */
ell_3v_barycentric_spherical_d(bary, poleF, poleE, poleH, evalN);
ELL_3V_SCALE_ADD3(qq, bary[0], thrn, bary[1], funk, bary[2], cone);
axis = 2;
}
qA = qq[0];
qB = qq[1];
qC = qq[2];
#undef OOSQRT2
#undef OOSQRT3
}
/* add the glyph */
if (parm->verbose >= 2) {
fprintf(stderr, "%s: glyph %d/%d: the glyph stays!\n",
me, idx, numGlyphs);
}
if (glyphsLimn) {
lookIdx = limnObjectLookAdd(glyphsLimn);
look = glyphsLimn->look + lookIdx;
ELL_4V_SET_TT(look->rgba, float, R, G, B, 1);
ELL_3V_SET(look->kads, parm->ADSP[0], parm->ADSP[1], parm->ADSP[2]);
look->spow = 0;
switch(parm->glyphType) {
case tenGlyphTypeBox:
glyphIdx = limnObjectCubeAdd(glyphsLimn, lookIdx);
break;
case tenGlyphTypeSphere:
glyphIdx = limnObjectPolarSphereAdd(glyphsLimn, lookIdx, axis,
2*parm->facetRes, parm->facetRes);
break;
case tenGlyphTypeCylinder:
glyphIdx = limnObjectCylinderAdd(glyphsLimn, lookIdx, axis,
parm->facetRes);
break;
case tenGlyphTypeSuperquad:
default:
glyphIdx =
limnObjectPolarSuperquadFancyAdd(glyphsLimn, lookIdx, axis,
AIR_CAST(float, qA),
AIR_CAST(float, qB),
AIR_CAST(float, qC), 0,
2*parm->facetRes,
parm->facetRes);
break;
}
ELL_4M_COPY_TT(mA_f, float, mA);
limnObjectPartTransform(glyphsLimn, glyphIdx, mA_f);
}
if (glyphsEcho) {
switch(parm->glyphType) {
case tenGlyphTypeBox:
eglyph = echoObjectNew(glyphsEcho, echoTypeCube);
/* nothing else to set */
break;
case tenGlyphTypeSphere:
eglyph = echoObjectNew(glyphsEcho, echoTypeSphere);
echoSphereSet(eglyph, 0, 0, 0, 1);
break;
case tenGlyphTypeCylinder:
eglyph = echoObjectNew(glyphsEcho, echoTypeCylinder);
echoCylinderSet(eglyph, axis);
break;
case tenGlyphTypeSuperquad:
default:
eglyph = echoObjectNew(glyphsEcho, echoTypeSuperquad);
echoSuperquadSet(eglyph, axis, qA, qB);
break;
}
echoColorSet(eglyph,
AIR_CAST(echoCol_t, R),
AIR_CAST(echoCol_t, G),
AIR_CAST(echoCol_t, B), 1);
echoMatterPhongSet(glyphsEcho, eglyph,
parm->ADSP[0], parm->ADSP[1],
parm->ADSP[2], parm->ADSP[3]);
inst = echoObjectNew(glyphsEcho, echoTypeInstance);
ELL_4M_COPY(eM, mA);
echoInstanceSet(inst, eM, eglyph);
echoListAdd(list, inst);
}
}
if (glyphsLimn) {
glyphsLimn->setVertexRGBAFromLook = svRGBAfl;
}
if (glyphsEcho) {
split = echoListSplit3(glyphsEcho, list, 10);
echoObjectAdd(glyphsEcho, split);
}
airMopOkay(mop);
return 0;
}
/*
** parm vector:
** 0 1 2 3 4 5 (6)
** step K_perp K_tan lerp X_ring Y_ring
*/
void
_coilKindScalarFilterModifiedCurvatureRings(coil_t *delta,
int xi, int yi, int zi,
coil_t **iv3, double spacing[3],
double parm[COIL_PARMS_NUM]) {
coil_t forwX[3], backX[3], forwY[3], backY[3], forwZ[3], backZ[3],
grad[3], gm, eps, KK, LL, denom, rspX, rspY, rspZ, lerp;
double bas0[3], bas1[3], bas2[3], len, norm[3], sk;
AIR_UNUSED(zi);
ELL_3V_SET(bas0, 0, 0, 1);
ELL_3V_SET(bas1, xi - parm[4], yi - parm[5], 0);
ELL_3V_NORM(bas1, bas1, len);
ELL_3V_CROSS(bas2, bas0, bas1);
rspX = AIR_CAST(coil_t, 1.0/spacing[0]);
rspY = AIR_CAST(coil_t, 1.0/spacing[1]);
rspZ = AIR_CAST(coil_t, 1.0/spacing[2]);
_coilKindScalar3x3x3Gradients(forwX, backX,
forwY, backY,
forwZ, backZ,
iv3,
rspX, rspY, rspZ);
grad[0] = rspX*(iv3[2][4] - iv3[0][4]);
grad[1] = rspY*(iv3[1][5] - iv3[1][3]);
grad[2] = rspZ*(iv3[1][7] - iv3[1][1]);
gm = AIR_CAST(coil_t, ELL_3V_LEN(grad));
if (gm) {
double tc, rcsq;
ELL_3V_SCALE(norm, 1.0/gm, grad);
tc = ELL_3V_DOT(norm, bas2);
rcsq = 1 - tc*tc;
sk = AIR_LERP(rcsq, parm[1], parm[2]);
} else {
sk = parm[1];
}
/* compute fluxes */
eps = 0.0000000001f;
KK = AIR_CAST(coil_t, sk*sk);
LL = ELL_3V_DOT(forwX, forwX);
denom = AIR_CAST(coil_t, 1.0/(eps + sqrt(LL)));
forwX[0] *= _COIL_CONDUCT(LL, KK)*denom;
LL = ELL_3V_DOT(forwY, forwY);
denom = AIR_CAST(coil_t, 1.0/(eps + sqrt(LL)));
forwY[1] *= _COIL_CONDUCT(LL, KK)*denom;
LL = ELL_3V_DOT(forwZ, forwZ);
denom = AIR_CAST(coil_t, 1.0/(eps + sqrt(LL)));
forwZ[2] *= _COIL_CONDUCT(LL, KK)*denom;
LL = ELL_3V_DOT(backX, backX);
denom = AIR_CAST(coil_t, 1.0/(eps + sqrt(LL)));
backX[0] *= _COIL_CONDUCT(LL, KK)*denom;
LL = ELL_3V_DOT(backY, backY);
denom = AIR_CAST(coil_t, 1.0/(eps + sqrt(LL)));
backY[1] *= _COIL_CONDUCT(LL, KK)*denom;
LL = ELL_3V_DOT(backZ, backZ);
denom = AIR_CAST(coil_t, 1.0/(eps + sqrt(LL)));
backZ[2] *= _COIL_CONDUCT(LL, KK)*denom;
lerp = AIR_CAST(coil_t, parm[2]);
delta[0] = (lerp*_coilLaplacian3(iv3, spacing)
+ (1-lerp)*gm*(rspX*(forwX[0] - backX[0])
+ rspY*(forwY[1] - backY[1])
+ rspZ*(forwZ[2] - backZ[2])));
delta[0] *= AIR_CAST(coil_t, parm[0]);
}
/*
** Thanks to:
** http://jgt.akpeters.com/papers/MollerHughes99/code.html
*/
void
ell_3m_rotate_between_d(double rot[9], double from[3], double to[3]) {
double vv[3];
double e, h, f;
if (!( rot && from && to)) {
return;
}
ELL_3V_CROSS(vv, from, to);
e = ELL_3V_DOT(from, to);
f = AIR_ABS(e);
if (f > 0.9999999) { /* "from" and "to"-vector almost parallel */
double tu[3], tv[3]; /* temporary storage vectors */
double xx[3]; /* vector most nearly orthogonal to "from" */
double c1, c2, c3; /* coefficients for later use */
int i, j;
xx[0] = AIR_ABS(from[0]);
xx[1] = AIR_ABS(from[1]);
xx[2] = AIR_ABS(from[2]);
if (xx[0] < xx[1]) {
if (xx[0] < xx[2]) {
xx[0] = 1.0; xx[1] = xx[2] = 0.0;
} else {
xx[2] = 1.0; xx[0] = xx[1] = 0.0;
}
} else {
if (xx[1] < xx[2]) {
xx[1] = 1.0; xx[0] = xx[2] = 0.0;
} else {
xx[2] = 1.0; xx[0] = xx[1] = 0.0;
}
}
tu[0] = xx[0] - from[0]; tu[1] = xx[1] - from[1]; tu[2] = xx[2] - from[2];
tv[0] = xx[0] - to[0]; tv[1] = xx[1] - to[1]; tv[2] = xx[2] - to[2];
c1 = 2.0 / ELL_3V_DOT(tu, tu);
c2 = 2.0 / ELL_3V_DOT(tv, tv);
c3 = c1 * c2 * ELL_3V_DOT(tu, tv);
for (i = 0; i < 3; i++) {
for (j = 0; j < 3; j++) {
rot[3*i + j] = - c1 * tu[i] * tu[j]
- c2 * tv[i] * tv[j]
+ c3 * tv[i] * tu[j];
}
rot[3*i + i] += 1.0;
}
} else { /* the most common case, unless "from"="to", or "from"=-"to" */
double hvx, hvz, hvxy, hvxz, hvyz;
h = 1.0/(1.0 + e); /* optimization by Gottfried Chen */
hvx = h * vv[0];
hvz = h * vv[2];
hvxy = hvx * vv[1];
hvxz = hvx * vv[2];
hvyz = hvz * vv[1];
rot[3*0 + 0] = e + hvx * vv[0];
rot[3*0 + 1] = hvxy - vv[2];
rot[3*0 + 2] = hvxz + vv[1];
rot[3*1 + 0] = hvxy + vv[2];
rot[3*1 + 1] = e + h * vv[1] * vv[1];
rot[3*1 + 2] = hvyz - vv[0];
rot[3*2 + 0] = hvxz - vv[1];
rot[3*2 + 1] = hvyz + vv[0];
rot[3*2 + 2] = e + hvz * vv[2];
}
return;
}
/*
******** limnCameraUpdate()
**
** sets in cam: W2V, V2W, U, V, N, vspNeer, vspFaar, vspDist
** and, if fov and aspect are set, this also sets uRange and vRange
**
** This does use biff to describe problems with camera settings
*/
int
limnCameraUpdate(limnCamera *cam) {
static const char me[] = "limnCameraUpdate";
double len, bb[4], uu[4], vv[4], nn[4], TT[16], RR[16];
if (!cam) {
biffAddf(LIMN, "%s: got NULL pointer", me);
return 1;
}
ELL_4V_SET(uu, 0, 0, 0, 0);
ELL_4V_SET(vv, 0, 0, 0, 0);
ELL_4V_SET(nn, 0, 0, 0, 0);
ELL_4V_SET(bb, 0, 0, 0, 1);
ELL_3V_SUB(nn, cam->at, cam->from);
len = ELL_3V_LEN(nn);
if (!len) {
biffAddf(LIMN, "%s: cam->at (%g,%g,%g) == cam->from", me,
cam->at[0], cam->at[1], cam->at[2]);
return 1;
}
if (cam->atRelative) {
/* ctx->cam->{neer,dist} are "at" relative */
cam->vspNeer = cam->neer + len;
cam->vspFaar = cam->faar + len;
cam->vspDist = cam->dist + len;
}
else {
/* ctx->cam->{neer,dist} are eye relative */
cam->vspNeer = cam->neer;
cam->vspFaar = cam->faar;
cam->vspDist = cam->dist;
}
if (!(cam->vspNeer > 0 && cam->vspDist > 0 && cam->vspFaar > 0)) {
biffAddf(LIMN, "%s: eye-relative near (%g), dist (%g), or far (%g) <= 0",
me, cam->vspNeer, cam->vspDist, cam->vspFaar);
return 1;
}
if (!(cam->vspNeer <= cam->vspFaar)) {
biffAddf(LIMN, "%s: eye-relative near (%g) further than far (%g)",
me, cam->vspNeer, cam->vspFaar);
return 1 ;
}
if (AIR_EXISTS(cam->fov)) {
if (!( AIR_IN_OP(0.0, cam->fov, 180.0) )) {
biffAddf(LIMN, "%s: cam->fov (%g) not in valid range between 0 and 180",
me, cam->fov);
return 1 ;
}
if (!AIR_EXISTS(cam->aspect)) {
biffAddf(LIMN, "%s: cam->fov set, but cam->aspect isn't", me);
return 1;
}
/* "fov" is half vertical angle */
cam->vRange[0] = -tan(cam->fov*AIR_PI/360)*(cam->vspDist);
cam->vRange[1] = -cam->vRange[0];
cam->uRange[0] = cam->vRange[0]*(cam->aspect);
cam->uRange[1] = -cam->uRange[0];
}
/* else cam->fov isn't set, but we're not going to complain if
uRange and vRange aren't both set ... */
ELL_3V_SCALE(nn, 1.0/len, nn);
ELL_3V_CROSS(uu, nn, cam->up);
len = ELL_3V_LEN(uu);
if (!len) {
biffAddf(LIMN, "%s: cam->up is co-linear with view direction", me);
return 1 ;
}
ELL_3V_SCALE(uu, 1.0/len, uu);
if (cam->rightHanded) {
ELL_3V_CROSS(vv, nn, uu);
}
else {
ELL_3V_CROSS(vv, uu, nn);
}
ELL_4V_COPY(cam->U, uu);
ELL_4V_COPY(cam->V, vv);
ELL_4V_COPY(cam->N, nn);
ELL_4M_TRANSLATE_SET(TT, -cam->from[0], -cam->from[1], -cam->from[2]);
ELL_4M_ROWS_SET(RR, uu, vv, nn, bb);
ELL_4M_MUL(cam->W2V, RR, TT);
ell_4m_inv_d(cam->V2W, cam->W2V);
return 0;
}
void
_gageSclAnswer (gageContext *ctx, gagePerVolume *pvl) {
char me[]="_gageSclAnswer";
double gmag=0, *hess, *norm, *gvec, *gten, *k1, *k2, curv=0,
sHess[9]={0,0,0,0,0,0,0,0,0};
double tmpMat[9], tmpVec[3], hevec[9], heval[3];
double len, gp1[3], gp2[3], *nPerp, ncTen[9], nProj[9]={0,0,0,0,0,0,0,0,0};
double alpha = 0.5;
double beta = 0.5;
double gamma = 5;
double cc = 1e-6;
#define FD_MEDIAN_MAX 16
int fd, nidx, xi, yi, zi;
double *fw, iv3wght[2*FD_MEDIAN_MAX*FD_MEDIAN_MAX*FD_MEDIAN_MAX],
wghtSum, wght;
/* convenience pointers for work below */
hess = pvl->directAnswer[gageSclHessian];
gvec = pvl->directAnswer[gageSclGradVec];
norm = pvl->directAnswer[gageSclNormal];
nPerp = pvl->directAnswer[gageSclNPerp];
gten = pvl->directAnswer[gageSclGeomTens];
k1 = pvl->directAnswer[gageSclK1];
k2 = pvl->directAnswer[gageSclK2];
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclValue)) {
/* done if doV */
if (ctx->verbose) {
fprintf(stderr, "%s: val = % 15.7f\n", me,
(double)(pvl->directAnswer[gageSclValue][0]));
}
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclGradVec)) {
/* done if doD1 */
if (ctx->verbose) {
fprintf(stderr, "%s: gvec = ", me);
ell_3v_print_d(stderr, gvec);
}
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclGradMag)) {
/* this is the true value of gradient magnitude */
gmag = pvl->directAnswer[gageSclGradMag][0] = sqrt(ELL_3V_DOT(gvec, gvec));
}
/* NB: it would seem that gageParmGradMagMin is completely ignored ... */
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclNormal)) {
if (gmag) {
ELL_3V_SCALE(norm, 1/gmag, gvec);
/* polishing ...
len = sqrt(ELL_3V_DOT(norm, norm));
ELL_3V_SCALE(norm, 1/len, norm);
*/
} else {
ELL_3V_COPY(norm, gageZeroNormal);
}
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclNPerp)) {
/* nPerp = I - outer(norm, norm) */
/* NB: this sets both nPerp and nProj */
ELL_3MV_OUTER(nProj, norm, norm);
ELL_3M_SCALE(nPerp, -1, nProj);
nPerp[0] += 1;
nPerp[4] += 1;
nPerp[8] += 1;
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclHessian)) {
/* done if doD2 */
if (ctx->verbose) {
fprintf(stderr, "%s: hess = \n", me);
ell_3m_print_d(stderr, hess);
}
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclLaplacian)) {
pvl->directAnswer[gageSclLaplacian][0] = hess[0] + hess[4] + hess[8];
if (ctx->verbose) {
fprintf(stderr, "%s: lapl = %g + %g + %g = %g\n", me,
hess[0], hess[4], hess[8],
pvl->directAnswer[gageSclLaplacian][0]);
}
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclHessFrob)) {
pvl->directAnswer[gageSclHessFrob][0] = ELL_3M_FROB(hess);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclHessEval)) {
/* HEY: look at the return value for root multiplicity? */
ell_3m_eigensolve_d(heval, hevec, hess, AIR_TRUE);
ELL_3V_COPY(pvl->directAnswer[gageSclHessEval], heval);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclHessEvec)) {
ELL_3M_COPY(pvl->directAnswer[gageSclHessEvec], hevec);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclHessRidgeness)) {
double A, B, S;
if (heval[1] >0 || heval[2]>0) {
pvl->directAnswer[gageSclHessRidgeness][0] = 0;
}
else if (AIR_ABS(heval[1])<1e-10 || AIR_ABS(heval[2])<1e-10) {
pvl->directAnswer[gageSclHessRidgeness][0] = 0;
}
else {
double *ans;
A = AIR_ABS(heval[1])/AIR_ABS(heval[2]);
B = AIR_ABS(heval[0])/sqrt(AIR_ABS(heval[1]*heval[2]));
S = sqrt(heval[0]*heval[0] + heval[1]*heval[1] + heval[2]*heval[2]);
ans = pvl->directAnswer[gageSclHessRidgeness];
ans[0] = (1-exp(-A*A/(2*alpha*alpha))) *
exp(-B*B/(2*beta*beta)) *
(1-exp(-S*S/(2*gamma*gamma))) *
exp(-2*cc*cc/(AIR_ABS(heval[1])*heval[2]*heval[2]));
}
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclHessValleyness)) {
double A, B, S;
if (heval[0] <0 || heval[1]<0) {
pvl->directAnswer[gageSclHessValleyness][0] = 0;
}
else if (AIR_ABS(heval[0])<1e-10 || AIR_ABS(heval[1])<1e-10) {
pvl->directAnswer[gageSclHessValleyness][0] = 0;
}
else {
double *ans;
A = AIR_ABS(heval[1])/AIR_ABS(heval[0]);
B = AIR_ABS(heval[2])/sqrt(AIR_ABS(heval[1]*heval[0]));
S = sqrt(heval[0]*heval[0] + heval[1]*heval[1] + heval[2]*heval[2]);
ans = pvl->directAnswer[gageSclHessValleyness];
ans[0] = (1-exp(-A*A/(2*alpha*alpha))) *
exp(-B*B/(2*beta*beta)) *
(1-exp(-S*S/(2*gamma*gamma))) *
exp(-2*cc*cc/(AIR_ABS(heval[1])*heval[0]*heval[0]));
}
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclHessMode)) {
pvl->directAnswer[gageSclHessMode][0] = airMode3_d(heval);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageScl2ndDD)) {
ELL_3MV_MUL(tmpVec, hess, norm);
pvl->directAnswer[gageScl2ndDD][0] = ELL_3V_DOT(norm, tmpVec);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclGeomTens)) {
if (gmag > ctx->parm.gradMagCurvMin) {
/* parm.curvNormalSide applied here to determine the sense of the
normal when doing all curvature calculations */
ELL_3M_SCALE(sHess, -(ctx->parm.curvNormalSide)/gmag, hess);
/* gten = nPerp * sHess * nPerp */
ELL_3M_MUL(tmpMat, sHess, nPerp);
ELL_3M_MUL(gten, nPerp, tmpMat);
if (ctx->verbose) {
fprintf(stderr, "%s: gten: \n", me);
ell_3m_print_d(stderr, gten);
ELL_3MV_MUL(tmpVec, gten, norm);
len = ELL_3V_LEN(tmpVec);
fprintf(stderr, "%s: should be small: %30.15f\n", me, (double)len);
ell_3v_perp_d(gp1, norm);
ELL_3MV_MUL(tmpVec, gten, gp1);
len = ELL_3V_LEN(tmpVec);
fprintf(stderr, "%s: should be bigger: %30.15f\n", me, (double)len);
ELL_3V_CROSS(gp2, gp1, norm);
ELL_3MV_MUL(tmpVec, gten, gp2);
len = ELL_3V_LEN(tmpVec);
fprintf(stderr, "%s: should (also) be bigger: %30.15f\n",
me, (double)len);
}
} else {
ELL_3M_ZERO_SET(gten);
}
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclTotalCurv)) {
curv = pvl->directAnswer[gageSclTotalCurv][0] = ELL_3M_FROB(gten);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclShapeTrace)) {
pvl->directAnswer[gageSclShapeTrace][0] = (curv
? ELL_3M_TRACE(gten)/curv
: 0);
}
if ( (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclK1)) ||
(GAGE_QUERY_ITEM_TEST(pvl->query, gageSclK2)) ){
double T, N, D;
T = ELL_3M_TRACE(gten);
N = curv;
D = 2*N*N - T*T;
/*
if (D < -0.0000001) {
fprintf(stderr, "%s: %g %g\n", me, T, N);
fprintf(stderr, "%s: !!! D curv determinant % 22.10f < 0.0\n", me, D);
fprintf(stderr, "%s: gten: \n", me);
ell_3m_print_d(stderr, gten);
}
*/
D = AIR_MAX(D, 0);
D = sqrt(D);
k1[0] = 0.5*(T + D);
k2[0] = 0.5*(T - D);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclMeanCurv)) {
pvl->directAnswer[gageSclMeanCurv][0] = (*k1 + *k2)/2;
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclGaussCurv)) {
pvl->directAnswer[gageSclGaussCurv][0] = (*k1)*(*k2);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclShapeIndex)) {
pvl->directAnswer[gageSclShapeIndex][0] =
-(2/AIR_PI)*atan2(*k1 + *k2, *k1 - *k2);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclCurvDir1)) {
/* HEY: this only works when K1, K2, 0 are all well mutually distinct,
since these are the eigenvalues of the geometry tensor, and this
code assumes that the eigenspaces are all one-dimensional */
ELL_3M_COPY(tmpMat, gten);
ELL_3M_DIAG_SET(tmpMat, gten[0] - *k1, gten[4]- *k1, gten[8] - *k1);
ell_3m_1d_nullspace_d(tmpVec, tmpMat);
ELL_3V_COPY(pvl->directAnswer[gageSclCurvDir1], tmpVec);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclCurvDir2)) {
/* HEY: this only works when K1, K2, 0 are all well mutually distinct,
since these are the eigenvalues of the geometry tensor, and this
code assumes that the eigenspaces are all one-dimensional */
ELL_3M_COPY(tmpMat, gten);
ELL_3M_DIAG_SET(tmpMat, gten[0] - *k2, gten[4] - *k2, gten[8] - *k2);
ell_3m_1d_nullspace_d(tmpVec, tmpMat);
ELL_3V_COPY(pvl->directAnswer[gageSclCurvDir2], tmpVec);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclFlowlineCurv)) {
if (gmag >= ctx->parm.gradMagCurvMin) {
/* because of the gageSclGeomTens prerequisite, sHess, nPerp, and
nProj are all already set */
/* ncTen = nPerp * sHess * nProj */
ELL_3M_MUL(tmpMat, sHess, nProj);
ELL_3M_MUL(ncTen, nPerp, tmpMat);
} else {
ELL_3M_ZERO_SET(ncTen);
}
/* there used to be a wrong extra sqrt() here */
pvl->directAnswer[gageSclFlowlineCurv][0] = ELL_3M_FROB(ncTen);
}
if (GAGE_QUERY_ITEM_TEST(pvl->query, gageSclMedian)) {
/* this item is currently a complete oddball in that it does not
benefit from anything done in the "filter" stage, which is in
fact a waste of time if the query consists only of this item */
fd = 2*ctx->radius;
if (fd > FD_MEDIAN_MAX) {
fprintf(stderr, "%s: PANIC: current filter diameter = %d "
"> FD_MEDIAN_MAX = %d\n", me, fd, FD_MEDIAN_MAX);
exit(1);
}
fw = ctx->fw + fd*3*gageKernel00;
/* HEY: this needs some optimization help */
wghtSum = 0;
nidx = 0;
for (xi=0; xi<fd; xi++) {
for (yi=0; yi<fd; yi++) {
for (zi=0; zi<fd; zi++) {
iv3wght[0 + 2*nidx] = pvl->iv3[nidx];
iv3wght[1 + 2*nidx] = fw[xi + 0*fd]*fw[yi + 1*fd]*fw[zi + 2*fd];
wghtSum += iv3wght[1 + 2*nidx];
nidx++;
}
}
}
qsort(iv3wght, fd*fd*fd, 2*sizeof(double), nrrdValCompare[nrrdTypeDouble]);
wght = 0;
for (nidx=0; nidx<fd*fd*fd; nidx++) {
wght += iv3wght[1 + 2*nidx];
if (wght > wghtSum/2) {
break;
}
}
pvl->directAnswer[gageSclMedian][0] = iv3wght[0 + 2*nidx];
}
return;
}