void GetCandidateParents(Ultra &U, const SeqData &QSD, float AbQ,
vector<unsigned> &Parents)
{
Parents.clear();
set<unsigned> TargetIndexes;
unsigned QL = QSD.L;
SeqData QuerySD = QSD;
unsigned ChunkLength;
vector<unsigned> ChunkLos;
GetChunkInfo(QL, ChunkLength, ChunkLos);
unsigned ChunkCount = SIZE(ChunkLos);
for (unsigned ChunkIndex = 0; ChunkIndex < ChunkCount; ++ChunkIndex)
{
unsigned Lo = ChunkLos[ChunkIndex];
asserta(Lo + ChunkLength <= QL);
const byte *Chunk = QSD.Seq + Lo;
// THIS MESSES UP --self!!
//char Prefix[32];
//sprintf(Prefix, "%u|", Lo);
//string ChunkLabel = string(Prefix) + string(QSD.Label);
//QuerySD.Label = ChunkLabel.c_str();
QuerySD.Seq = Chunk;
QuerySD.L = ChunkLength;
AddTargets(U, QuerySD, TargetIndexes);
Lo += ChunkLength;
}
for (set<unsigned>::const_iterator p = TargetIndexes.begin();
p != TargetIndexes.end(); ++p)
{
unsigned TargetIndex = *p;
bool Accept = true;
if (AbQ > 0.0f)
{
const char *TargetLabel = U.GetSeedLabel(TargetIndex);
float AbT = GetAbFromLabel(string(TargetLabel));
if (AbT > 0.0f && AbT < opt_abskew*AbQ)
Accept = false;
}
if (Accept)
Parents.push_back(TargetIndex);
}
}
TInt DMemSpyDriverLogChanChunks::Request( TInt aFunction, TAny* a1, TAny* a2 )
{
TInt r = DMemSpyDriverLogChanBase::Request( aFunction, a1, a2 );
if ( r == KErrNone )
{
switch( aFunction )
{
case EMemSpyDriverOpCodeChunkGetHandles:
r = GetChunkHandles( (TMemSpyDriverInternalChunkHandleParams*) a1 );
break;
case EMemSpyDriverOpCodeChunkGetInfo:
r = GetChunkInfo( (TMemSpyDriverInternalChunkInfoParams*) a1 );
break;
default:
r = KErrNotSupported;
break;
}
}
//
return r;
}
void CActiveConsole::ProcessKeyPressL(TChar aChar)
{
if (aChar == EKeyEscape)
{
CActiveScheduler::Stop();
return;
}
if(!iInit1)
{
switch(aChar)
{
case '1':
iBaudRate=EBps576000;
break;
case '2':
iBaudRate=EBps1152000;
break;
case '3':
iBaudRate=EBps4000000;
break;
default:
iBaudRate=EBps4000000;
break;
}
iConsole->Printf(_L("Baud rate: %d\r\n"),iBaudRate);
iInit1=ETrue;
TFirConfig aConfigBuf;
TFirConfigV01& aConfig=aConfigBuf();
aConfig.iRate=iBaudRate;
TInt ret=iPort.SetConfig(aConfigBuf);
iConsole->Printf(_L("Error %d on SetConfig\r\n"),ret);
RequestCharacter();
return;
}
if(!iInit2)
{
switch(aChar)
{
case '1'://1 sec
iTimeDelay=1000000;
break;
case '2'://100ms
iTimeDelay=100000;
break;
case '3'://10ms
iTimeDelay=10000;
break;
case '4'://1ms
iTimeDelay=1000;
break;
case '5'://0 sec
iTimeDelay=0;
break;
default:
iTimeDelay=1000000;
break;
}
iConsole->Printf(_L("Time Delay: %d\r\n"),iTimeDelay);
iInit2=ETrue;
RequestCharacter();
return;
}
if(!iInit3)
{
switch(aChar)
{
case '1':
iBufSz=1;
break;
case '2':
iBufSz=4;
break;
case '3':
iBufSz=2000;
break;
case '4':
iBufSz=2042;
break;
default:
iBufSz=2000;
break;
}
iConsole->Printf(_L("Buffer size: %d\r\n"),iBufSz);
iInit3=ETrue;
RequestCharacter();
return;
}
switch (aChar)
{
case '1'://start reader
iRW->Start(EFalse);
break;
case '2'://stop reader
iRW->Start(ETrue);
break;
case '3'://start writer
iRW->Stop();
break;
case '8'://get fir regs
GetFirRegs();
break;
case '9'://get dma reader regs
GetDmaReaderRegs();
break;
case '0'://get dma writer regs
GetDmaWriterRegs();
break;
case 'a'://get TxBuf info
GetWriteBufInfo();
break;
case 'b'://get RxBuf info
GetReadBufInfo();
break;
case 'c'://get RxBuf info
GetChunkInfo();
break;
case 'd':
GetMiscInfo();
break;
default:
iConsole->Printf(_L("\r\nUnknown Command\r\n\r\n"));
break;
}
RequestCharacter ();
return;
}
