C++ (Cpp) GetFastaSeq Beispiele

Beispiel #1

Datei: seqvect.cpp Projekt: cran/muscle

void SeqVect::FromFASTAFile(TextFile &File)
	{
	Clear();

	FILE *f = File.GetStdioFile();
	for (;;)
		{
		char *Label;
		unsigned uLength;
		char *SeqData = GetFastaSeq(f, &uLength, &Label);
		if (0 == SeqData)
			return;
		Seq *ptrSeq = new Seq;

		for (unsigned i = 0; i < uLength; ++i)
			{
			char c = SeqData[i];
			ptrSeq->push_back(c);
			}

		ptrSeq->SetName(Label);
		push_back(ptrSeq);

		delete[] SeqData;
		delete[] Label;
		}
	}

Beispiel #2

Datei: fasta.cpp Projekt: Unode/ext_apps

void MSA::FromFASTAFile(TextFile &File)
	{
	Clear();

	FILE *f = File.GetStdioFile();
	
	unsigned uSeqCount = 0;
	unsigned uColCount = uInsane;
	for (;;)
		{
		char *Label;
		unsigned uSeqLength;
		char *SeqData = GetFastaSeq(f, &uSeqLength, &Label, false);
		if (0 == SeqData)
			break;
		AppendSeq(SeqData, uSeqLength, Label);
		}
	}