const char*
CPairedRead::GetMappedContig() const
{
int tMapped = GetMappedValue();
switch ( tMapped ) {
case 1:
if ( m_sameChr == 1 || GetPos( 0 ) < GetPos( 1 ) ) {
return m_contig[0].c_str();
} else {
return m_contig[1].c_str();
}
break;
case 2: case 3: case 4:
return "invert";
case 5:
return "interchromo";
case 6:
return "single";
case 7:
return "unmap";
default:
std::cerr << "Can not parse mapping position!!" << std::endl;
exit( -1 );
}
}
static int writeADC(SampleRecord *sampleRecord, size_t currentTicks, LoggerConfig *config){
int rate = SAMPLE_DISABLED;
unsigned int adc[CONFIG_ADC_CHANNELS];
int adcRead = 0;
for (unsigned int i=0; i < CONFIG_ADC_CHANNELS;i++){
ADCConfig *ac = &(config->ADCConfigs[i]);
size_t sr = ac->cfg.sampleRate;
if (sr != SAMPLE_DISABLED){
if ((currentTicks % sr) == 0){
rate = HIGHER_SAMPLE_RATE(sr,rate);
if (!adcRead){
readAllADC(&adc[0],&adc[1],&adc[2],&adc[3],&adc[4],&adc[5],&adc[6],&adc[7]);
adcRead = 1;
}
float analogValue = 0;
switch(ac->scalingMode){
case SCALING_MODE_RAW:
analogValue = adc[i];
break;
case SCALING_MODE_LINEAR:
analogValue = (ac->linearScaling * (float)adc[i]);
break;
case SCALING_MODE_MAP:
analogValue = GetMappedValue((float)adc[i],&(ac->scalingMap));
break;
}
if (ac->loggingPrecision == 0){
sampleRecord->ADCSamples[i].intValue = analogValue;
}else{
sampleRecord->ADCSamples[i].floatValue = analogValue;
}
}
}
}
return rate;
}
