void mitk::SlicedData::SetOrigin(const mitk::Point3D& origin)
{
mitk::TimeSlicedGeometry* timeSlicedGeometry = GetTimeSlicedGeometry();
assert(timeSlicedGeometry!=NULL);
mitk::SlicedGeometry3D* slicedGeometry;
unsigned int steps = timeSlicedGeometry->GetTimeSteps();
for(unsigned int timestep = 0; timestep < steps; ++timestep)
{
slicedGeometry = GetSlicedGeometry(timestep);
if(slicedGeometry != NULL)
{
slicedGeometry->SetOrigin(origin);
if(slicedGeometry->GetEvenlySpaced())
{
mitk::Geometry2D* geometry2D = slicedGeometry->GetGeometry2D(0);
geometry2D->SetOrigin(origin);
slicedGeometry->InitializeEvenlySpaced(geometry2D, slicedGeometry->GetSlices());
}
}
if(GetTimeSlicedGeometry()->GetEvenlyTimed())
{
GetTimeSlicedGeometry()->InitializeEvenlyTimed(slicedGeometry, steps);
break;
}
}
}
void mitk::BaseData::PrintSelf(std::ostream& os, itk::Indent indent) const
{
os << std::endl;
os << indent << " TimeSlicedGeometry: ";
if(GetTimeSlicedGeometry() == NULL)
os << "NULL" << std::endl;
else
GetTimeSlicedGeometry()->Print(os, indent);
}
bool mitk::SlicedData::VerifyRequestedRegion()
{
if(GetTimeSlicedGeometry() == NULL) return false;
unsigned int i;
// Is the requested region within the LargestPossibleRegion?
// Note that the test is indeed against the largest possible region
// rather than the buffered region; see DataObject::VerifyRequestedRegion.
const IndexType &requestedRegionIndex = m_RequestedRegion.GetIndex();
const IndexType &largestPossibleRegionIndex
= GetLargestPossibleRegion().GetIndex();
const SizeType& requestedRegionSize = m_RequestedRegion.GetSize();
const SizeType& largestPossibleRegionSize
= GetLargestPossibleRegion().GetSize();
for (i=0; i< RegionDimension; ++i)
{
if ( (requestedRegionIndex[i] < largestPossibleRegionIndex[i]) ||
((requestedRegionIndex[i] + static_cast<long>(requestedRegionSize[i]))
> (largestPossibleRegionIndex[i]+static_cast<long>(largestPossibleRegionSize[i]))))
{
return false;
}
}
return true;
}
mitk::ScalarType mitk::Cone::GetVolume()
{
Geometry3D* geometry = GetTimeSlicedGeometry();
return geometry->GetExtentInMM(0) * 0.5
* geometry->GetExtentInMM(2) * 0.5
* vnl_math::pi / 3.0
* geometry->GetExtentInMM(1);
}
const mitk::TimeSlicedGeometry* mitk::BaseData::GetUpdatedTimeSlicedGeometry()
{
SetRequestedRegionToLargestPossibleRegion();
UpdateOutputInformation();
return GetTimeSlicedGeometry();
}
void mitk::ContourSet::UpdateOutputInformation()
{
mitk::ContourSet::ContourVectorType contourVec = GetContours();
mitk::ContourSet::ContourIterator contoursIterator = contourVec.begin();
mitk::ContourSet::ContourIterator contoursIteratorEnd = contourVec.end();
// initialize container
mitk::BoundingBox::PointsContainer::Pointer pointscontainer=mitk::BoundingBox::PointsContainer::New();
mitk::BoundingBox::PointIdentifier pointid=0;
mitk::Point3D point;
mitk::AffineTransform3D* transform = GetTimeSlicedGeometry()->GetIndexToWorldTransform();
mitk::AffineTransform3D::Pointer inverse = mitk::AffineTransform3D::New();
transform->GetInverse(inverse);
// calculate a bounding box that includes all contours
// \todo probably we should do this additionally for each time-step
while (contoursIterator != contoursIteratorEnd)
{
const Geometry3D* geometry = (*contoursIterator).second->GetUpdatedTimeSlicedGeometry();
unsigned char i;
for(i=0; i<8; ++i)
{
point = inverse->TransformPoint(geometry->GetCornerPoint(i));
if(point[0]*point[0]+point[1]*point[1]+point[2]*point[2] < mitk::large)
pointscontainer->InsertElement( pointid++, point);
else
{
itkGenericOutputMacro( << "Unrealistically distant corner point encountered. Ignored. BoundingObject: " << (*contoursIterator).second );
}
}
++contoursIterator;
}
mitk::BoundingBox::Pointer boundingBox = mitk::BoundingBox::New();
boundingBox->SetPoints(pointscontainer);
boundingBox->ComputeBoundingBox();
Geometry3D* geometry3d = GetGeometry(0);
geometry3d->SetIndexToWorldTransform(transform);
geometry3d->SetBounds(boundingBox->GetBounds());
GetTimeSlicedGeometry()->InitializeEvenlyTimed(geometry3d, GetTimeSlicedGeometry()->GetTimeSteps());
}
void mitk::UnstructuredGrid::CalculateBoundingBox()
{
//
// first make sure, that the associated time sliced geometry has
// the same number of geometry 3d's as vtkUnstructuredGrids are present
//
mitk::TimeSlicedGeometry* timeGeometry = GetTimeSlicedGeometry();
if ( timeGeometry->GetTimeSteps() != m_GridSeries.size() )
{
itkExceptionMacro(<<"timeGeometry->GetTimeSteps() != m_GridSeries.size() -- use Initialize(timeSteps) with correct number of timeSteps!");
}
void mitk::UnstructuredGrid::UpdateOutputInformation()
{
if ( this->GetSource() )
{
this->GetSource()->UpdateOutputInformation();
}
if ( ( m_CalculateBoundingBox ) && ( m_GridSeries.size() > 0 ) )
CalculateBoundingBox();
else
GetTimeSlicedGeometry()->UpdateInformation();
}
void mitk::Surface::UpdateOutputInformation()
{
if ( this->GetSource() )
{
this->GetSource()->UpdateOutputInformation();
}
if ( ( m_CalculateBoundingBox ) && ( m_PolyDataSeries.size() > 0 ) )
CalculateBoundingBox();
else
GetTimeSlicedGeometry()->UpdateInformation();
}
void mitk::SlicedData::SetSpacing(mitk::Vector3D aSpacing)
{
mitk::TimeSlicedGeometry* timeSlicedGeometry = GetTimeSlicedGeometry();
assert(timeSlicedGeometry!=NULL);
mitk::SlicedGeometry3D* slicedGeometry;
unsigned int steps = timeSlicedGeometry->GetTimeSteps();
for(unsigned int timestep = 0; timestep < steps; ++timestep)
{
slicedGeometry = GetSlicedGeometry(timestep);
if(slicedGeometry != NULL)
{
slicedGeometry->SetSpacing(aSpacing);
}
if(GetTimeSlicedGeometry()->GetEvenlyTimed())
{
GetTimeSlicedGeometry()->InitializeEvenlyTimed(slicedGeometry, steps);
break;
}
}
}
void mitk::PointSet::UpdateOutputInformation()
{
if ( this->GetSource( ) )
{
this->GetSource( )->UpdateOutputInformation( );
}
//
// first make sure, that the associated time sliced geometry has
// the same number of geometry 3d's as PointSets are present
//
mitk::TimeSlicedGeometry* timeGeometry = GetTimeSlicedGeometry();
if ( timeGeometry->GetTimeSteps() != m_PointSetSeries.size() )
{
itkExceptionMacro(<<"timeGeometry->GetTimeSteps() != m_PointSetSeries.size() -- use Initialize(timeSteps) with correct number of timeSteps!");
}
void mitk::ContourModel::UpdateOutputInformation()
{
if ( this->GetSource() )
{
this->GetSource()->UpdateOutputInformation();
}
if(this->m_UpdateBoundingBox)
{
//update the bounds of the geometry according to the stored vertices
float mitkBounds[6];
//calculate the boundingbox at each timestep
typedef itk::BoundingBox<unsigned long, 3, ScalarType> BoundingBoxType;
typedef BoundingBoxType::PointsContainer PointsContainer;
int timesteps = this->GetTimeSteps();
//iterate over the timesteps
for(int currenTimeStep = 0; currenTimeStep < timesteps; currenTimeStep++)
{
if( dynamic_cast< mitk::PlaneGeometry* >(this->GetGeometry(currenTimeStep)) )
{
//do not update bounds for 2D geometries, as they are unfortunately defined with min bounds 0!
return;
}
else
{//we have a 3D geometry -> let's update bounds
//only update bounds if the contour was modified
if (this->GetMTime() > this->GetGeometry(currenTimeStep)->GetBoundingBox()->GetMTime())
{
mitkBounds[0] = 0.0;
mitkBounds[1] = 0.0;
mitkBounds[2] = 0.0;
mitkBounds[3] = 0.0;
mitkBounds[4] = 0.0;
mitkBounds[5] = 0.0;
BoundingBoxType::Pointer boundingBox = BoundingBoxType::New();
PointsContainer::Pointer points = PointsContainer::New();
VertexIterator it = this->IteratorBegin(currenTimeStep);
VertexIterator end = this->IteratorEnd(currenTimeStep);
//fill the boundingbox with the points
while(it != end)
{
Point3D currentP = (*it)->Coordinates;
BoundingBoxType::PointType p;
p.CastFrom(currentP);
points->InsertElement(points->Size(), p);
it++;
}
//construct the new boundingBox
boundingBox->SetPoints(points);
boundingBox->ComputeBoundingBox();
BoundingBoxType::BoundsArrayType tmp = boundingBox->GetBounds();
mitkBounds[0] = tmp[0];
mitkBounds[1] = tmp[1];
mitkBounds[2] = tmp[2];
mitkBounds[3] = tmp[3];
mitkBounds[4] = tmp[4];
mitkBounds[5] = tmp[5];
//set boundingBox at current timestep
Geometry3D* geometry3d = this->GetGeometry(currenTimeStep);
geometry3d->SetBounds(mitkBounds);
}
}
}
this->m_UpdateBoundingBox = false;
}
GetTimeSlicedGeometry()->UpdateInformation();
}
//const mitk::Geometry2D* mitk::SlicedData::GetGeometry2D(int s, int t) const
//{
// const_cast<SlicedData*>(this)->SetRequestedRegionToLargestPossibleRegion();
//
// const_cast<SlicedData*>(this)->UpdateOutputInformation();
//
// return GetSlicedGeometry(t)->GetGeometry2D(s);
//}
//
mitk::SlicedGeometry3D* mitk::SlicedData::GetSlicedGeometry(unsigned int t) const
{
if(GetTimeSlicedGeometry() == NULL)
return NULL;
return dynamic_cast<SlicedGeometry3D*>(GetTimeSlicedGeometry()->GetGeometry3D(t));
}
mitk::ContourSet::ContourSet() :
m_ContourVector( ContourVectorType() ),
m_NumberOfContours (0)
{
GetTimeSlicedGeometry()->InitializeEvenlyTimed(1);
}
void mitk::ContourSet::Initialize()
{
m_ContourVector = ContourVectorType();
GetTimeSlicedGeometry()->InitializeEvenlyTimed(1);
}