void
parse_command_line (int argc, const char *argv[])
{
int opt = FALSE;
/* parse command line options */
while ((opt = get_option (argc, argv, s_opts, l_opts)) != EOF)
{
switch ((char) opt)
{
case 'o':
output_file = HDstrdup (opt_arg);
break;
case 'i':
input_file = HDstrdup (opt_arg);
break;
case 'u':
ub_file = HDstrdup (opt_arg);
break;
case 'c':
do_clobber = TRUE;
break;
case 'h':
usage (h5tools_getprogname());
leave (EXIT_SUCCESS);
case 'V':
print_version (h5tools_getprogname());
leave (EXIT_SUCCESS);
case '?':
default:
usage (h5tools_getprogname());
leave (EXIT_FAILURE);
}
}
}
/*
NAME
HDgettagsname -- return a text name of a tag
USAGE
char * HDgettagsname(tag)
uint16 tag; IN: tag of element to find
RETURNS
Descriptive text or NULL
DESCRIPTION
Map a tag to a dynamically allocated text name of it.
Checks for special elements now.
--------------------------------------------------------------------------- */
char *
HDgettagsname(uint16 tag)
{
CONSTR(FUNC, "HDgettagsname"); /* for HERROR */
char *ret = NULL;
intn i;
if (SPECIALTAG(tag))
ret = (char *) HDstrdup("Special ");
tag = BASETAG(tag);
for (i = 0; i < (intn)(sizeof(tag_descriptions) / sizeof(tag_descript_t)); i++)
if (tag_descriptions[i].tag == tag)
{
if (ret == NULL)
ret = (char *) HDstrdup(tag_descriptions[i].name);
else
{
char *t;
t = (char *) HDmalloc(HDstrlen(ret) +
HDstrlen(tag_descriptions[i].name) + 2);
if (t == NULL)
{
HDfree(ret);
HRETURN_ERROR(DFE_NOSPACE, NULL)
} /* end if */
HDstrcpy(t, ret);
HDstrcat(t, tag_descriptions[i].name);
HDfree(ret);
ret = t;
} /* end else */
} /* end if */
static void
trav_table_addlink(trav_table_t *table, haddr_t objno, const char *path)
{
size_t i; /* Local index variable */
for(i = 0; i < table->nobjs; i++) {
if(table->objs[i].objno == objno) {
size_t n;
/* already inserted? */
if(HDstrcmp(table->objs[i].name, path) == 0)
return;
/* allocate space if necessary */
if(table->objs[i].nlinks == (unsigned)table->objs[i].sizelinks) {
table->objs[i].sizelinks = MAX(1, table->objs[i].sizelinks * 2);
table->objs[i].links = (trav_link_t*)HDrealloc(table->objs[i].links, table->objs[i].sizelinks * sizeof(trav_link_t));
} /* end if */
/* insert it */
n = table->objs[i].nlinks++;
table->objs[i].links[n].new_name = (char *)HDstrdup(path);
return;
} /* end for */
} /* end for */
HDassert(0 && "object not in table?!?");
}
/*-------------------------------------------------------------------------
* Function: trav_table_addflags
*
* Purpose: Add FLAGS, NAME and TYPE of object to table
*
* Return: void
*-------------------------------------------------------------------------
*/
void trav_table_addflags(unsigned *flags,
char *name,
h5trav_type_t type,
trav_table_t *table)
{
size_t new_obj;
if(table) {
if(table->nobjs == table->size) {
table->size = MAX(1, table->size * 2);
table->objs = (trav_obj_t *)HDrealloc(table->objs, table->size * sizeof(trav_obj_t));
} /* end if */
new_obj = table->nobjs++;
table->objs[new_obj].objno = 0;
table->objs[new_obj].flags[0] = flags[0];
table->objs[new_obj].flags[1] = flags[1];
table->objs[new_obj].is_same_trgobj = 0;
table->objs[new_obj].name = (char *)HDstrdup(name);
table->objs[new_obj].type = type;
table->objs[new_obj].nlinks = 0;
table->objs[new_obj].sizelinks = 0;
table->objs[new_obj].links = NULL;
}
}
void
parse_command_line (int argc, const char *argv[])
{
int opt = FALSE;
/* parse command line options */
while ((opt = get_option (argc, argv, s_opts, l_opts)) != EOF)
{
switch ((char) opt)
{
case 'c':
nbytes = HDstrdup (opt_arg);
break;
case '?':
default:
usage (h5tools_getprogname());
exit (EXIT_FAILURE);
}
}
if (argc <= opt_ind)
{
error_msg("missing file name\n");
usage (h5tools_getprogname());
exit (EXIT_FAILURE);
}
}
static void
parse_command_line(int argc, const char *argv[])
{
int opt = FALSE;
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
switch ((char) opt) {
case 'o':
output_file = HDstrdup (opt_arg);
break;
case 'i':
input_file = HDstrdup (opt_arg);
break;
case 'u':
ub_file = HDstrdup (opt_arg);
break;
case 'd':
do_delete = TRUE;
break;
case 'h':
usage(h5tools_getprogname());
leave(EXIT_SUCCESS);
case 'V':
print_version(h5tools_getprogname());
leave(EXIT_SUCCESS);
case '?':
default:
usage(h5tools_getprogname());
leave(EXIT_FAILURE);
}
}
/* check for file name to be processed */
/*
if (argc <= opt_ind+2) {
error_msg("missing file name\n");
usage(h5tools_getprogname());
HDexit(EXIT_FAILURE);
}
*/
}
/*------------------------------------------------------------------------- * Function: symlink_visit_add * * Purpose: Add an symbolic link to visited data structure * * Return: 0 on success, -1 on failure * * Programmer: Neil Fortner, [email protected] * Adapted from trav_addr_add in h5trav.c by Quincey Koziol * * Date: September 5, 2008 * * Modified: * Jonathan Kim * - Moved from h5ls.c to share among tools. (Sep 16, 2010) * - Renamed from elink_trav_add to symlink_visit_add for both soft and * external links. (May 25, 2010) * - Add type parameter to distingush between soft and external link for * sure, which prevent from mixing up visited link when the target names * are same between the soft and external link, as code marks with the * target name. (May 25,2010) * *------------------------------------------------------------------------- */ herr_t symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path) { size_t idx; /* Index of address to use */ void *tmp_ptr; /* Allocate space if necessary */ if(visited->nused == visited->nalloc) { visited->nalloc = MAX(1, visited->nalloc * 2); if(NULL == (tmp_ptr = HDrealloc(visited->objs, visited->nalloc * sizeof(visited->objs[0])))) return -1; visited->objs = tmp_ptr; } /* end if */ /* Append it */ idx = visited->nused++; visited->objs[idx].type = type; visited->objs[idx].file = NULL; visited->objs[idx].path = NULL; if (type == H5L_TYPE_EXTERNAL) { if(NULL == (visited->objs[idx].file = HDstrdup(file))) { visited->nused--; return -1; } } if(NULL == (visited->objs[idx].path = HDstrdup(path))) { visited->nused--; if (visited->objs[idx].file) HDfree (visited->objs[idx].file); return -1; } return 0; } /* end symlink_visit_add() */
/*-------------------------------------------------------------------------
* Function: symlink_visit_add
*
* Purpose: Add an symbolic link to visited data structure
*
* Return: 0 on success,
* -1 on failure
*-------------------------------------------------------------------------
*/
herr_t
symlink_visit_add(symlink_trav_t *visited, H5L_type_t type, const char *file, const char *path)
{
herr_t ret_value = SUCCEED;
size_t idx; /* Index of address to use */
/* Allocate space if necessary */
if(visited->nused == visited->nalloc) {
void *tmp_ptr;
visited->nalloc = MAX(1, visited->nalloc * 2);
if(NULL == (tmp_ptr = HDrealloc(visited->objs, visited->nalloc * sizeof(symlink_trav_path_t))))
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "visited data structure realloc failed");
visited->objs = (symlink_trav_path_t *)tmp_ptr;
} /* end if */
/* Append it */
idx = visited->nused++;
visited->objs[idx].type = type;
visited->objs[idx].file = NULL;
visited->objs[idx].path = NULL;
if(type == H5L_TYPE_EXTERNAL) {
if(NULL == (visited->objs[idx].file = HDstrdup(file))) {
visited->nused--;
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "visited data structure name allocation failed");
} /* end if */
} /* end if */
if(NULL == (visited->objs[idx].path = HDstrdup(path))) {
visited->nused--;
if(visited->objs[idx].file)
HDfree (visited->objs[idx].file);
HGOTO_ERROR(FAIL, H5E_tools_min_id_g, "visited data structure path allocation failed");
} /* end if */
done:
return ret_value;
} /* end symlink_visit_add() */
/*-------------------------------------------------------------------------
* Function: table_attr_mark_exist
*
* Purpose: mark given attribute name to table as sign of exsit
*
* Parameter:
* - exist [IN]
* - name [IN] : attribute name
* - table [OUT]
*
* Programmer: Jonathan Kim
*
* Date: March 15, 2011
*------------------------------------------------------------------------*/
static void table_attr_mark_exist(unsigned *exist, char *name, table_attrs_t *table)
{
size_t new_val;
if(table->nattrs == table->size) {
table->size = MAX(1, table->size * 2);
table->attrs = (match_attr_t *)HDrealloc(table->attrs, table->size * sizeof(match_attr_t));
} /* end if */
new_val = table->nattrs++;
table->attrs[new_val].exist[0] = exist[0];
table->attrs[new_val].exist[1] = exist[1];
table->attrs[new_val].name = (char *)HDstrdup(name);
}
/*------------------------------------------------------------------------- * Function: trav_info_add * * Purpose: Add a link path & type to info struct * * Return: void * * Programmer: Quincey Koziol, [email protected] * * Date: September 1, 2007 * *------------------------------------------------------------------------- */ static void trav_info_add(trav_info_t *info, const char *path, h5trav_type_t obj_type) { size_t idx; /* Index of address to use */ /* Allocate space if necessary */ if(info->nused == info->nalloc) { info->nalloc = MAX(1, info->nalloc * 2);; info->paths = (trav_path_t *)HDrealloc(info->paths, info->nalloc * sizeof(trav_path_t)); } /* end if */ /* Append it */ idx = info->nused++; info->paths[idx].path = HDstrdup(path); info->paths[idx].type = obj_type; } /* end trav_info_add() */
/*------------------------------------------------------------------------- * Function: trav_addr_add * * Purpose: Add a hardlink address to visited data structure * * Return: void * * Programmer: Quincey Koziol, [email protected] * * Date: September 1, 2007 * *------------------------------------------------------------------------- */ static void trav_addr_add(trav_addr_t *visited, haddr_t addr, const char *path) { size_t idx; /* Index of address to use */ /* Allocate space if necessary */ if(visited->nused == visited->nalloc) { visited->nalloc = MAX(1, visited->nalloc * 2);; visited->objs = HDrealloc(visited->objs, visited->nalloc * sizeof(visited->objs[0])); } /* end if */ /* Append it */ idx = visited->nused++; visited->objs[idx].addr = addr; visited->objs[idx].path = HDstrdup(path); } /* end trav_addr_add() */
/*-------------------------------------------------------------------------
* Function: ref_path_table_put
*
* Purpose: Enter the 'obj' with 'path' in the table (assumes its not
* already there)
*
* Create an object reference, pte, and store them
* in the table.
*
* NOTE: Takes ownership of the path name string passed in!
*
* Return: Non-negative on success, negative on failure
*
* Programmer: REMcG
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static int
ref_path_table_put(const char *path, haddr_t objno)
{
ref_path_node_t *new_node;
HDassert(ref_path_table);
HDassert(path);
if((new_node = HDmalloc(sizeof(ref_path_node_t))) == NULL)
return(-1);
new_node->objno = objno;
new_node->path = HDstrdup(path);
return(H5SL_insert(ref_path_table, new_node, &(new_node->objno)));
}
/*-------------------------------------------------------------------------
* Function: add_obj
*
* Purpose: add a shared object to the table
* realloc the table if necessary
*
* Return: void
*
* Programmer: Ruey-Hsia Li
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
add_obj(table_t *table, haddr_t objno, const char *objname, hbool_t record)
{
unsigned u;
/* See if we need to make table larger */
if(table->nobjs == table->size) {
table->size *= 2;
table->objs = (struct obj_t *)HDrealloc(table->objs, table->size * sizeof(table->objs[0]));
} /* end if */
/* Increment number of objects in table */
u = table->nobjs++;
/* Set information about object */
table->objs[u].objno = objno;
table->objs[u].objname = HDstrdup(objname);
table->objs[u].recorded = record;
table->objs[u].displayed = 0;
}
static void
trav_table_add(trav_table_t *table,
const char *path,
const H5O_info_t *oinfo)
{
size_t new_obj;
if(table->nobjs == table->size) {
table->size = MAX(1, table->size * 2);
table->objs = (trav_obj_t*)HDrealloc(table->objs, table->size * sizeof(trav_obj_t));
} /* end if */
new_obj = table->nobjs++;
table->objs[new_obj].objno = oinfo ? oinfo->addr : HADDR_UNDEF;
table->objs[new_obj].flags[0] = table->objs[new_obj].flags[1] = 0;
table->objs[new_obj].is_same_trgobj = 0;
table->objs[new_obj].name = (char *)HDstrdup(path);
table->objs[new_obj].type = oinfo ? (h5trav_type_t)oinfo->type : H5TRAV_TYPE_LINK;
table->objs[new_obj].nlinks = 0;
table->objs[new_obj].sizelinks = 0;
table->objs[new_obj].links = NULL;
}
/*-------------------------------------------------------------------------
* Function: H5LD_get_dset_type_size
*
* Purpose: To return the size of the dataset's datatype in bytes
* null "fields": return the size of the dataset's datatype
* non-null "fields": return the size of the dataset's datatype
* with respect to the selection in "fields"
*
* Return: Success: size of the dataset's datatype
* Failure: 0 (valid datatypes are never zero size)
*
* Programmer: Vailin Choi; March 2010
*
*-------------------------------------------------------------------------
*/
static size_t
H5LD_get_dset_type_size(hid_t did, const char *fields)
{
hid_t dset_tid = -1; /* Dataset's type identifier */
hid_t tid = -1; /* Native Type identifier */
H5LD_memb_t **listv = NULL; /* Vector for storing information in "fields" */
char *dup_fields = NULL; /* A copy of "fields" */
size_t ret_value = 0; /* Return value */
/* Get the datatype of the dataset */
if((dset_tid = H5Dget_type(did)) < 0)
goto done;
if((tid = H5Tget_native_type(dset_tid, H5T_DIR_DEFAULT)) < 0)
goto done;
if(fields == NULL) /* If no "fields" is specified */
ret_value = H5Tget_size(tid);
else { /* "fields" are specified */
size_t len; /* Estimate the number of comma-separated fields in "fields" */
size_t tot = 0; /* Data type size of all the fields in "fields" */
int n = 0, num = 0; /* Local index variables */
HDassert(fields && *fields);
/* Should be a compound datatype if "fields" exists */
if(H5Tget_class(dset_tid) != H5T_COMPOUND)
goto done;
/* Get a copy of "fields" */
if(NULL == (dup_fields = HDstrdup(fields)))
goto done;
/* Allocate memory for a list of H5LD_memb_t pointers to store "fields" info */
len = (HDstrlen(fields) / 2) + 2;
if(NULL == (listv = (H5LD_memb_t **)HDcalloc(len, sizeof(H5LD_memb_t *))))
goto done;
/* Process and store info for "fields" */
if((num = H5LD_construct_vector(dup_fields, listv/*OUT*/, tid)) < 0)
goto done;
/* Sum up the size of all the datatypes in "fields" */
for(n = 0; n < num; n++)
tot += listv[n]->last_tsize;
/* Clean up the vector of H5LD_memb_t structures */
H5LD_clean_vector(listv);
/* Return the total size */
ret_value = tot;
} /* end else */
done:
H5E_BEGIN_TRY
H5Tclose(tid);
H5Tclose(dset_tid);
H5E_END_TRY
/* Free the array of H5LD_memb_t pointers */
if(listv)
HDfree(listv);
/* Free memory */
if(dup_fields)
HDfree(dup_fields);
return(ret_value);
} /* H5LD_get_dset_type_size() */
/*-------------------------------------------------------------------------
* Function: H5LD_get_dset_elmts
*
* Purpose: To retrieve selected data from the dataset
*
* Return: Success: 0
* Failure: negative
*
* Programmer: Vailin Choi; August 2010
*
*-------------------------------------------------------------------------
*/
static herr_t
H5LD_get_dset_elmts(hid_t did, const hsize_t *prev_dims, const hsize_t *cur_dims,
const char *fields, void *buf)
{
hid_t dtid = -1, tid = -1; /* Dataset type id */
hid_t sid = -1, mid = -1; /* Dataspace and memory space id */
hssize_t snum_elmts; /* Number of dataset elements in the selection (signed) */
hsize_t num_elmts; /* Number of dataset elements in the selection */
hsize_t start[H5S_MAX_RANK];/* Starting offset */
hsize_t count[H5S_MAX_RANK];/* ??offset */
H5LD_memb_t **listv = NULL; /* Vector for storing information in "fields" */
char *dup_fields = NULL; /* A copy of "fields" */
char *sav_buf = NULL; /* Saved pointer temporary buffer */
unsigned ctr; /* Counter for # of curr_dims > prev_dims */
int ndims; /* Number of dimensions for the dataset */
int i; /* Local index variable */
herr_t ret_value = FAIL; /* Return value */
/* Verify parameters */
if(prev_dims == NULL || cur_dims == NULL || buf == NULL)
goto done;
/* Get dataset's dataspace */
if((sid = H5Dget_space(did)) < 0)
goto done;
/* Get the number of dimensions */
if((ndims = H5Sget_simple_extent_ndims(sid)) < 0)
goto done;
/* Verify that cur_dims must have one dimension whose size is greater than prev_dims */
HDmemset(start, 0, sizeof start);
HDmemset(count, 0, sizeof count);
ctr = 0;
for(i = 0; i < ndims; i++)
if(cur_dims[i] > prev_dims[i]) {
++ctr;
count[i] = cur_dims[i] - prev_dims[i];
start[i] = prev_dims[i];
} /* end if */
else { /* < or = */
start[i] = 0;
count[i] = MIN(prev_dims[i], cur_dims[i]);
} /* end else */
if(!ctr)
goto done;
if(ctr == 1) { /* changes for only one dimension */
/* Make the selection in the dataset based on "cur_dims" and "prev_dims" */
if(H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, NULL, count, NULL) < 0)
goto done;
} /* end if */
else { /* changes for more than one dimensions */
HDmemset(start, 0, sizeof start);
/* Make the selection in the dataset based on "cur_dims" and "prev_dims" */
if(H5Sselect_hyperslab(sid, H5S_SELECT_SET, start, NULL, cur_dims, NULL) < 0)
goto done;
if(H5Sselect_hyperslab(sid, H5S_SELECT_NOTB, start, NULL, prev_dims, NULL) < 0)
goto done;
} /* end else */
/* Get the number of elements in the selection */
if(0 == (snum_elmts = H5Sget_select_npoints(sid)))
goto done;
num_elmts = (hsize_t)snum_elmts;
/* Create the memory space for the selection */
if((mid = H5Screate_simple(1, &num_elmts, NULL)) < 0)
goto done;
/* Get the native datatype size */
if((dtid = H5Dget_type(did)) < 0)
goto done;
if((tid = H5Tget_native_type(dtid, H5T_DIR_DEFAULT)) < 0)
goto done;
if(fields == NULL) { /* nothing in "fields" */
/* Read and store all the elements in "buf" */
if(H5Dread(did, tid, mid, sid, H5P_DEFAULT, buf) < 0)
goto done;
} /* end if */
else { /* "fields" is specified */
unsigned char *buf_p = (unsigned char *)buf; /* Pointer to the destination buffer */
char *tmp_buf; /* Temporary buffer for data read */
size_t tot_tsize; /* Total datatype size */
size_t len; /* Estimate the number of comma-separated fields in "fields" */
/* should be a compound datatype if "fields" exists */
if(H5Tget_class(tid) != H5T_COMPOUND)
goto done;
/* Get the total size of the dataset's datatypes */
if(0 == (tot_tsize = H5LD_get_dset_type_size(did, NULL)))
goto done;
/* Allocate memory for reading in the elements in the dataset selection */
if(NULL == (sav_buf = tmp_buf = (char *)HDcalloc((size_t)num_elmts, tot_tsize)))
goto done;
/* Read the dataset elements in the selection */
if(H5Dread(did, tid, mid, sid, H5P_DEFAULT, tmp_buf) < 0)
goto done;
/* Make a copy of "fields" */
if(NULL == (dup_fields = HDstrdup(fields)))
goto done;
/* Allocate memory for the vector of H5LD_memb_t pointers */
len = (HDstrlen(fields) / 2) + 2;
if(NULL == (listv = (H5LD_memb_t **)HDcalloc(len, sizeof(H5LD_memb_t *))))
goto done;
/* Process and store information for "fields" */
if(H5LD_construct_vector(dup_fields, listv, tid) < 0)
goto done;
/* Copy data for each dataset element in the selection */
for(i = 0; i < (int)num_elmts; i++) {
int j; /* Local index variable */
/* Copy data for "fields" to the input buffer */
for(j = 0; listv[j] != NULL; j++) {
HDmemcpy(buf_p, tmp_buf + listv[j]->tot_offset, listv[j]->last_tsize);
buf_p += listv[j]->last_tsize;
} /* end for */
tmp_buf += tot_tsize;
} /* end for */
/* Clean up the vector of H5LD_memb_t structures */
H5LD_clean_vector(listv);
} /* end else */
/* Indicate success */
ret_value = SUCCEED;
done:
H5E_BEGIN_TRY
H5Tclose(dtid);
H5Tclose(tid);
H5Sclose(sid);
H5Sclose(mid);
H5E_END_TRY
/* Free the array of H5LD_memb_t pointers */
if(listv)
HDfree(listv);
/* Free memory */
if(dup_fields)
HDfree(dup_fields);
if(sav_buf)
HDfree(sav_buf);
return(ret_value);
} /* H5LD_get_dset_elmts() */
int
main (int argc, const char *argv[])
{
int fd;
unsigned int size;
char *filename;
long res;
char *buf;
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
/* Initialize h5tools lib */
h5tools_init();
parse_command_line (argc, argv);
if (nbytes == NULL)
{
/* missing arg */
error_msg("missing size\n");
usage (h5tools_getprogname());
exit (EXIT_FAILURE);
}
if (argc <= (opt_ind))
{
error_msg("missing file name\n");
usage (h5tools_getprogname());
exit (EXIT_FAILURE);
}
filename = HDstrdup (argv[opt_ind]);
size = 0;
res = sscanf (nbytes, "%u", &size);
if (res == EOF)
{
/* fail */
error_msg("missing file name\n");
usage (h5tools_getprogname());
exit (EXIT_FAILURE);
}
fd = HDopen (filename, O_RDONLY, 0);
if (fd < 0)
{
error_msg("can't open file %s\n", filename);
exit (EXIT_FAILURE);
}
buf = (char *)HDmalloc ((unsigned)(size + 1));
if (buf == NULL)
{
HDclose (fd);
exit (EXIT_FAILURE);
}
res = HDread (fd, buf, (unsigned)size);
if (res < (long)size)
{
if (buf)
HDfree (buf);
HDclose (fd);
exit (EXIT_FAILURE);
}
HDwrite (1, buf, (unsigned)size);
if (buf)
HDfree (buf);
HDclose (fd);
return (EXIT_SUCCESS);
}
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose: HDF5 user block unjammer
*
* Return: Success: 0
* Failure: 1
*
* Programmer:
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int
main (int argc, const char *argv[])
{
char *ifname;
void *edata;
H5E_auto2_t func;
hid_t ifile;
hsize_t usize;
htri_t testval;
herr_t status;
hid_t plist;
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
/* Initialize h5tools lib */
h5tools_init();
/* Disable error reporting */
H5Eget_auto2(H5E_DEFAULT, &func, &edata);
H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
parse_command_line (argc, argv);
if (argc <= (opt_ind))
{
error_msg("missing file name\n");
usage (h5tools_getprogname());
return (EXIT_FAILURE);
}
ifname = HDstrdup (argv[opt_ind]);
testval = H5Fis_hdf5 (ifname);
if (testval <= 0)
{
error_msg("Input HDF5 file is not HDF \"%s\"\n", ifname);
return (EXIT_FAILURE);
}
ifile = H5Fopen (ifname, H5F_ACC_RDONLY, H5P_DEFAULT);
if (ifile < 0)
{
error_msg("Can't open input HDF5 file \"%s\"\n", ifname);
return (EXIT_FAILURE);
}
plist = H5Fget_create_plist (ifile);
if (plist < 0)
{
error_msg("Can't get file creation plist for file \"%s\"\n",
ifname);
return (EXIT_FAILURE);
}
status = H5Pget_userblock (plist, &usize);
if (status < 0)
{
error_msg("Can't get user block for file \"%s\"\n", ifname);
return (EXIT_FAILURE);
}
printf ("%ld\n", (long) usize);
H5Pclose (plist);
H5Fclose (ifile);
return (EXIT_SUCCESS);
}
/*-------------------------------------------------------------------------
* Function: parse_command_line
*
* Purpose: Parses command line and sets up global variable to control output
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Quincey Koziol, 2/13/2007
*
*-------------------------------------------------------------------------
*/
static int
parse_command_line(int argc, const char *argv[], param_t *parms)
{
int opt; /* Option from command line */
size_t curr_group; /* Current group name to copy */
/* Check for empty command line */
if(argc == 1) {
usage();
leave(EXIT_SUCCESS);
} /* end if */
/* Parse command line options */
while((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
switch((char)opt) {
/* Display 'help' */
case 'h':
usage();
leave(EXIT_SUCCESS);
/* Create objects with the latest version of the format */
case 'l':
parms->latest = TRUE;
break;
/* Create parent groups */
case 'p':
parms->parents = TRUE;
break;
/* Verbose output */
case 'v':
parms->verbose = TRUE;
break;
/* Display version */
case 'V':
print_version(h5tools_getprogname());
leave(EXIT_SUCCESS);
/* Bad command line argument */
default:
usage();
leave(EXIT_FAILURE);
} /* end switch */
} /* end while */
/* Check for file name to be processed */
if(argc <= opt_ind) {
error_msg("missing file name\n");
usage();
leave(EXIT_FAILURE);
} /* end if */
/* Retrieve file name */
parms->fname = HDstrdup(argv[opt_ind]);
opt_ind++;
/* Check for group(s) to be created */
if(argc <= opt_ind) {
error_msg("missing group name(s)\n");
usage();
leave(EXIT_FAILURE);
} /* end if */
/* Allocate space for the group name pointers */
parms->ngroups = (size_t)(argc - opt_ind);
parms->groups = (char **)HDmalloc(parms->ngroups * sizeof(char *));
/* Retrieve the group names */
curr_group = 0;
while(opt_ind < argc) {
parms->groups[curr_group] = HDstrdup(argv[opt_ind]);
curr_group++;
opt_ind++;
} /* end while */
#ifdef QAK
HDfprintf(stderr, "parms->parents = %t\n", parms->parents);
HDfprintf(stderr, "parms->verbose = %t\n", parms->verbose);
HDfprintf(stderr, "parms->fname = '%s'\n", parms->fname);
HDfprintf(stderr, "parms->ngroups = %Zu\n", parms->ngroups);
for(curr_group = 0; curr_group < parms->ngroups; curr_group++)
HDfprintf(stderr, "parms->group[%Zu] = '%s'\n", curr_group, parms->groups[curr_group]);
#endif /* QAK */
return(0);
} /* parse_command_line() */
/*-------------------------------------------------------------------------
* Function: parse_command_line
*
* Purpose: Parse the command line for h5watch (take only long options)
*
* Return: Success: Set the corresponding command flags and return void
* Failure: Exits program with EXIT_FAILURE value.
*
* Programmer: Vailin Choi; August 2010
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
static void
parse_command_line(int argc, const char *argv[])
{
int opt; /* Command line option */
int tmp;
/* no arguments */
if (argc == 1) {
usage(h5tools_getprogname());
leave(EXIT_FAILURE);
}
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
switch ((char)opt) {
case '?':
case 'h': /* --help */
usage(h5tools_getprogname());
leave(EXIT_SUCCESS);
case 'V': /* --version */
print_version(progname);
leave(EXIT_SUCCESS);
break;
case 'w': /* --width=N */
g_display_width = (int)HDstrtol(opt_arg, NULL, 0);
if(g_display_width < 0) {
usage(h5tools_getprogname());
leave(EXIT_FAILURE);
}
break;
case 'd': /* --dim */
g_monitor_size_only = TRUE;
break;
case 'S': /* --simple */
g_simple_output = TRUE;
break;
case 'l': /* --label */
g_label = TRUE;
break;
case 'p': /* --polling=N */
/* g_polling_interval = HDstrtod(opt_arg, NULL); */
if((tmp = (int)HDstrtol(opt_arg, NULL, 10)) <= 0) {
usage(h5tools_getprogname());
leave(EXIT_FAILURE);
}
g_polling_interval = (unsigned)tmp;
break;
case 'f': /* --fields=<list_of_fields> */
if(g_list_of_fields == NULL) {
if((g_list_of_fields = HDstrdup(opt_arg)) == NULL) {
error_msg("memory allocation failed (file %s:line %d)\n",
__FILE__, __LINE__);
leave(EXIT_FAILURE);
}
} else {
char *str;
if((str = HDstrdup(opt_arg)) == NULL) {
error_msg("memory allocation failed (file %s:line %d)\n",
__FILE__, __LINE__);
leave(EXIT_FAILURE);
}
if((g_list_of_fields = (char *)HDrealloc(g_list_of_fields, HDstrlen(g_list_of_fields) + HDstrlen(str) + 2)) == NULL) {
error_msg("memory allocation failed (file %s:line %d)\n",
__FILE__, __LINE__);
leave(EXIT_FAILURE);
}
HDstrcat(g_list_of_fields, FIELD_SEP);
HDstrcat(g_list_of_fields, str);
}
break;
default:
usage(h5tools_getprogname());
leave(EXIT_FAILURE);
}
}
/* check for object to be processed */
if (argc <= opt_ind) {
error_msg("missing dataset name\n");
usage(h5tools_getprogname());
leave(EXIT_FAILURE);
}
} /* parse_command_line() */
int
main (int argc, const char *argv[])
{
hid_t fid_src = -1;
hid_t fid_dst = -1;
unsigned flag = 0;
unsigned verbose = 0;
unsigned parents = 0;
hid_t ocpl_id = (-1); /* Object copy property list */
hid_t lcpl_id = (-1); /* Link creation property list */
int opt;
int li_ret;
h5tool_link_info_t linkinfo;
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
/* initialize h5tools lib */
h5tools_init();
/* init linkinfo struct */
HDmemset(&linkinfo, 0, sizeof(h5tool_link_info_t));
/* Check for no command line parameters */
if(argc == 1)
{
usage();
leave(EXIT_FAILURE);
} /* end if */
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF)
{
switch ((char)opt)
{
case 'd':
oname_dst = HDstrdup(opt_arg);
break;
case 'f':
/* validate flag */
if (parse_flag(opt_arg,&flag)<0)
{
usage();
leave(EXIT_FAILURE);
}
str_flag = HDstrdup(opt_arg);
break;
case 'h':
usage();
leave(EXIT_SUCCESS);
break;
case 'i':
fname_src = HDstrdup(opt_arg);
break;
case 'o':
fname_dst = HDstrdup(opt_arg);
break;
case 'p':
parents = 1;
break;
case 's':
oname_src = HDstrdup(opt_arg);
break;
case 'V':
print_version(h5tools_getprogname());
leave(EXIT_SUCCESS);
break;
case 'v':
verbose = 1;
break;
default:
usage();
leave(EXIT_FAILURE);
}
} /* end of while */
/*-------------------------------------------------------------------------
* check for missing file/object names
*-------------------------------------------------------------------------*/
if (fname_src==NULL)
{
error_msg("Input file name missing\n");
usage();
leave(EXIT_FAILURE);
}
if (fname_dst==NULL)
{
error_msg("Output file name missing\n");
usage();
leave(EXIT_FAILURE);
}
if (oname_src==NULL)
{
error_msg("Source object name missing\n");
usage();
leave(EXIT_FAILURE);
}
if (oname_dst==NULL)
{
error_msg("Destination object name missing\n");
usage();
leave(EXIT_FAILURE);
}
/*-------------------------------------------------------------------------
* open output file
*-------------------------------------------------------------------------*/
/* Attempt to open an existing HDF5 file first. Need to open the dst file
before the src file just in case that the dst and src are the same file
*/
fid_dst = h5tools_fopen(fname_dst, H5F_ACC_RDWR, H5P_DEFAULT, NULL, NULL, 0);
/*-------------------------------------------------------------------------
* open input file
*-------------------------------------------------------------------------*/
fid_src = h5tools_fopen(fname_src, H5F_ACC_RDONLY, H5P_DEFAULT, NULL, NULL, 0);
/*-------------------------------------------------------------------------
* test for error in opening input file
*-------------------------------------------------------------------------*/
if (fid_src==-1)
{
error_msg("Could not open input file <%s>...Exiting\n", fname_src);
leave(EXIT_FAILURE);
}
/*-------------------------------------------------------------------------
* create an output file when failed to open it
*-------------------------------------------------------------------------*/
/* If we couldn't open an existing file, try creating file */
/* (use "EXCL" instead of "TRUNC", so we don't blow away existing non-HDF5 file) */
if(fid_dst < 0)
fid_dst = H5Fcreate(fname_dst, H5F_ACC_EXCL, H5P_DEFAULT, H5P_DEFAULT);
/*-------------------------------------------------------------------------
* test for error in opening output file
*-------------------------------------------------------------------------*/
if (fid_dst==-1)
{
error_msg("Could not open output file <%s>...Exiting\n", fname_dst);
leave(EXIT_FAILURE);
}
/*-------------------------------------------------------------------------
* print some info
*-------------------------------------------------------------------------*/
if (verbose)
{
printf("Copying file <%s> and object <%s> to file <%s> and object <%s>\n",
fname_src, oname_src, fname_dst, oname_dst);
if (flag) {
HDassert(str_flag);
printf("Using %s flag\n", str_flag);
}
}
/*-------------------------------------------------------------------------
* create property lists for copy
*-------------------------------------------------------------------------*/
/* create property to pass copy options */
if ( (ocpl_id = H5Pcreate(H5P_OBJECT_COPY)) < 0)
goto error;
/* set options for object copy */
if (flag)
{
if ( H5Pset_copy_object(ocpl_id, flag) < 0)
goto error;
}
/* Create link creation property list */
if((lcpl_id = H5Pcreate(H5P_LINK_CREATE)) < 0) {
error_msg("Could not create link creation property list\n");
goto error;
} /* end if */
/* Check for creating intermediate groups */
if(parents) {
/* Set the intermediate group creation property */
if(H5Pset_create_intermediate_group(lcpl_id, 1) < 0) {
error_msg("Could not set property for creating parent groups\n");
goto error;
} /* end if */
/* Display some output if requested */
if(verbose)
printf("%s: Creating parent groups\n", h5tools_getprogname());
} /* end if */
else /* error, if parent groups doesn't already exist in destination file */
{
size_t i, len;
len = HDstrlen(oname_dst);
/* check if all the parents groups exist. skip root group */
for (i = 1; i < len; i++)
{
if ('/'==oname_dst[i])
{
char *str_ptr;
str_ptr = (char *)HDcalloc(i + 1, sizeof(char));
HDstrncpy(str_ptr, oname_dst, i);
str_ptr[i]='\0';
if (H5Lexists(fid_dst, str_ptr, H5P_DEFAULT) <= 0)
{
error_msg("group <%s> doesn't exist. Use -p to create parent groups.\n", str_ptr);
HDfree(str_ptr);
goto error;
}
HDfree(str_ptr);
}
}
}
/*-------------------------------------------------------------------------
* do the copy
*-------------------------------------------------------------------------*/
if(verbose)
linkinfo.opt.msg_mode = 1;
li_ret = H5tools_get_symlink_info(fid_src, oname_src, &linkinfo, 1);
if (li_ret == 0) /* dangling link */
{
if(H5Lcopy(fid_src, oname_src,
fid_dst, oname_dst,
H5P_DEFAULT, H5P_DEFAULT) < 0)
goto error;
}
else /* valid link */
{
if (H5Ocopy(fid_src, /* Source file or group identifier */
oname_src, /* Name of the source object to be copied */
fid_dst, /* Destination file or group identifier */
oname_dst, /* Name of the destination object */
ocpl_id, /* Object copy property list */
lcpl_id)<0) /* Link creation property list */
goto error;
}
/* free link info path */
if (linkinfo.trg_path)
HDfree(linkinfo.trg_path);
/* close propertis */
if(H5Pclose(ocpl_id)<0)
goto error;
if(H5Pclose(lcpl_id)<0)
goto error;
/* close files */
if (H5Fclose(fid_src)<0)
goto error;
if (H5Fclose(fid_dst)<0)
goto error;
leave(EXIT_SUCCESS);
error:
printf("Error in copy...Exiting\n");
/* free link info path */
if (linkinfo.trg_path)
HDfree(linkinfo.trg_path);
H5E_BEGIN_TRY {
H5Pclose(ocpl_id);
H5Pclose(lcpl_id);
H5Fclose(fid_src);
H5Fclose(fid_dst);
} H5E_END_TRY;
leave(EXIT_FAILURE);
}
/****************************************************************
**
** test_grp_memb_funcs(): Test group member information
** functionality
**
****************************************************************/
static void test_grp_memb_funcs(hid_t fapl)
{
hid_t file; /* File ID */
hid_t dataset; /* Dataset ID */
hid_t datatype; /* Common datatype ID */
hid_t filespace; /* Common dataspace ID */
hid_t root_group,grp; /* Root group ID */
int i; /* counting variable */
char name[NAMELEN]; /* temporary name buffer */
char *dnames[NDATASETS+2];/* Names of the datasets created */
char *obj_names[NDATASETS+2];/* Names of the objects in group */
char dataset_name[NAMELEN]; /* dataset name */
ssize_t name_len; /* Length of object's name */
H5G_info_t ginfo; /* Buffer for querying object's info */
herr_t ret = SUCCEED; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Group Member Information Functionality\n"));
/* Create the test file with the datasets */
file = H5Fcreate(DATAFILE, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
CHECK(file, FAIL, "H5Fcreate");
datatype = H5Tcopy(H5T_NATIVE_INT);
CHECK(datatype, FAIL, "H5Tcopy");
filespace = H5Screate(H5S_SCALAR);
CHECK(filespace, FAIL, "H5Screate");
for(i = 0; i < NDATASETS; i++) {
sprintf(name, "Dataset %d", i);
dataset = H5Dcreate2(file, name, datatype, filespace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Keep a copy of the dataset names around for later */
dnames[i] = HDstrdup(name);
CHECK(dnames[i], NULL, "strdup");
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
} /* end for */
/* Create a group and named datatype under root group for testing */
grp = H5Gcreate2(file, "grp", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Gcreate2");
dnames[NDATASETS] = HDstrdup("grp");
CHECK(dnames[NDATASETS], NULL, "strdup");
ret = H5Tcommit2(file, "dtype", datatype, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Tcommit2");
dnames[NDATASETS + 1] = HDstrdup("dtype");
CHECK(dnames[NDATASETS], NULL, "strdup");
/* Close everything up */
ret = H5Tclose(datatype);
CHECK(ret, FAIL, "H5Tclose");
ret = H5Gclose(grp);
CHECK(ret, FAIL, "H5Gclose");
ret = H5Sclose(filespace);
CHECK(ret, FAIL, "H5Sclose");
ret = H5Fclose(file);
CHECK(ret, FAIL, "H5Fclose");
/* Sort the dataset names */
HDqsort(dnames, (size_t)(NDATASETS + 2), sizeof(char *), iter_strcmp);
/* Iterate through the datasets in the root group in various ways */
file = H5Fopen(DATAFILE, H5F_ACC_RDONLY, fapl);
CHECK(file, FAIL, "H5Fopen");
/* These two functions, H5Oget_info_by_idx and H5Lget_name_by_idx, actually
* iterate through B-tree for group members in internal library design.
*/
root_group = H5Gopen2(file, "/", H5P_DEFAULT);
CHECK(root_group, FAIL, "H5Gopen2");
ret = H5Gget_info(root_group, &ginfo);
CHECK(ret, FAIL, "H5Gget_info");
VERIFY(ginfo.nlinks, (NDATASETS + 2), "H5Gget_info");
for(i = 0; i < (int)ginfo.nlinks; i++) {
H5O_info_t oinfo; /* Object info */
/* Test with NULL for name, to query length */
name_len = H5Lget_name_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, NULL, (size_t)NAMELEN, H5P_DEFAULT);
CHECK(name_len, FAIL, "H5Lget_name_by_idx");
ret = (herr_t)H5Lget_name_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, dataset_name, (size_t)(name_len + 1), H5P_DEFAULT);
CHECK(ret, FAIL, "H5Lget_name_by_idx");
/* Double-check that the length is the same */
VERIFY(ret, name_len, "H5Lget_name_by_idx");
/* Keep a copy of the dataset names around for later */
obj_names[i] = HDstrdup(dataset_name);
CHECK(obj_names[i], NULL, "strdup");
ret = H5Oget_info_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Oget_info_by_idx");
if(!HDstrcmp(dataset_name, "grp"))
VERIFY(oinfo.type, H5O_TYPE_GROUP, "H5Lget_name_by_idx");
if(!HDstrcmp(dataset_name, "dtype"))
VERIFY(oinfo.type, H5O_TYPE_NAMED_DATATYPE, "H5Lget_name_by_idx");
if(!HDstrncmp(dataset_name, "Dataset", (size_t)7))
VERIFY(oinfo.type, H5O_TYPE_DATASET, "H5Lget_name_by_idx");
} /* end for */
H5E_BEGIN_TRY {
ret = (herr_t)H5Lget_name_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)(NDATASETS+3), dataset_name, (size_t)NAMELEN, H5P_DEFAULT);
} H5E_END_TRY;
VERIFY(ret, FAIL, "H5Lget_name_by_idx");
/* Sort the dataset names */
HDqsort(obj_names, (size_t)(NDATASETS + 2), sizeof(char *), iter_strcmp);
/* Compare object names */
for(i = 0; i< (int)ginfo.nlinks; i++) {
ret = HDstrcmp(dnames[i], obj_names[i]);
VERIFY(ret, 0, "HDstrcmp");
} /* end for */
ret = H5Gclose(root_group);
CHECK(ret, FAIL, "H5Gclose");
ret = H5Fclose(file);
CHECK(ret, FAIL, "H5Fclose");
/* Free the dataset names */
for(i = 0; i< (NDATASETS + 2); i++) {
HDfree(dnames[i]);
HDfree(obj_names[i]);
} /* end for */
} /* test_grp_memb_funcs() */
/*-------------------------------------------------------------------------
* Function: main
*
* Purpose: h5watch
*
* Return: Success: 0
* Failure: 1
*
* Programmer: Vailin Choi; August 2010
*
*-------------------------------------------------------------------------
*/
int
main(int argc, const char *argv[])
{
char drivername[50];
char *fname = NULL;
char *dname = NULL;
void *edata;
H5E_auto2_t func;
char *x;
hid_t fid = -1;
hid_t fapl = -1;
/* Set up tool name and exit status */
h5tools_setprogname(PROGRAMNAME);
h5tools_setstatus(EXIT_SUCCESS);
/* Disable error reporting */
H5Eget_auto2(H5E_DEFAULT, &func, &edata);
H5Eset_auto2(H5E_DEFAULT, NULL, NULL);
/* Initialize h5tools lib */
h5tools_init();
/* parse command line options */
parse_command_line(argc, argv);
if(argc <= opt_ind) {
error_msg("missing dataset name\n");
usage(h5tools_getprogname());
leave(EXIT_FAILURE);
}
/* Mostly copied from tools/h5ls coding & modified accordingly */
/*
* [OBJECT] is specified as
* [<filename>/<path_to_dataset>/<dsetname>]
*
* Example: ../dir1/foo/bar/dset
* \_________/\______/
* file obj
*
* The dichotomy is determined by calling H5Fopen() repeatedly until it
* succeeds. The first call uses the entire name and each subsequent call
* chops off the last component. If we reach the beginning of the name
* then there must have been something wrong with the file (perhaps it
* doesn't exist).
*/
if((fname = HDstrdup(argv[opt_ind])) == NULL) {
error_msg("memory allocation failed (file %s:line %d)\n",
__FILE__, __LINE__);
h5tools_setstatus(EXIT_FAILURE);
}
/* Create a copy of file access property list */
if((fapl = H5Pcreate(H5P_FILE_ACCESS)) < 0)
return -1;
/* Set to use the latest library format */
if(H5Pset_libver_bounds(fapl, H5F_LIBVER_LATEST, H5F_LIBVER_LATEST) < 0)
return -1;
do {
while(fname && *fname) {
fid = h5tools_fopen(fname, H5F_ACC_RDONLY|H5F_ACC_SWMR_READ, fapl, NULL, drivername, sizeof drivername);
if(fid >= 0) {
HDfprintf(stdout, "Opened \"%s\" with %s driver.\n", fname, drivername);
break; /*success*/
} /* end if */
/* Shorten the file name; lengthen the object name */
x = dname;
dname = HDstrrchr(fname, '/');
if(x)
*x = '/';
if(!dname)
break;
*dname = '\0';
} /* end while */
/* Try opening the file again if somehow unstable */
} while(g_retry-- > 0 && fid == FAIL);
if(fid < 0) {
error_msg("unable to open file \"%s\"\n", fname);
if(fname) HDfree(fname);
if(fapl >= 0) H5Pclose(fapl);
leave(EXIT_FAILURE);
}
if(!dname) {
error_msg("no dataset specified\n");
h5tools_setstatus(EXIT_FAILURE);
} else {
*dname = '/';
x = dname;
if((dname = HDstrdup(dname)) == NULL) {
error_msg("memory allocation failed (file %s:line %d)\n",
__FILE__, __LINE__);
h5tools_setstatus(EXIT_FAILURE);
} else {
*x = '\0';
/* Validate dataset */
if(check_dataset(fid, dname) < 0)
h5tools_setstatus(EXIT_FAILURE);
/* Validate input "fields" */
else if(g_list_of_fields && *g_list_of_fields)
if(process_cmpd_fields(fid, dname) < 0)
h5tools_setstatus(EXIT_FAILURE);
}
}
/* If everything is fine, start monitoring the datset */
if(h5tools_getstatus() != EXIT_FAILURE)
if(monitor_dataset(fid, dname) < 0)
h5tools_setstatus(EXIT_FAILURE);
/* Free spaces */
if(fname) HDfree(fname);
if(dname) HDfree(dname);
if(g_list_of_fields) HDfree(g_list_of_fields);
if(g_listv) {
H5LD_clean_vector(g_listv);
HDfree(g_listv);
}
if(g_dup_fields) HDfree(g_dup_fields);
/* Close the file access property list */
if(fapl >= 0 && H5Pclose(fapl) < 0) {
error_msg("unable to close file access property list\n");
h5tools_setstatus(EXIT_FAILURE);
}
/* Close the file */
if(H5Fclose(fid) < 0) {
error_msg("unable to close file\n");
h5tools_setstatus(EXIT_FAILURE);
}
H5Eset_auto2(H5E_DEFAULT, func, edata);
/* exit */
leave(h5tools_getstatus());
} /* main() */
/****************************************************************
**
** test_iter_attr(): Test attribute iteration functionality
**
****************************************************************/
static void test_iter_attr(hid_t fapl, hbool_t new_format)
{
hid_t file; /* File ID */
hid_t dataset; /* Common Dataset ID */
hid_t filespace; /* Common dataspace ID */
hid_t attribute; /* Attribute ID */
int i; /* counting variable */
hsize_t idx; /* Index in the attribute list */
char name[NAMELEN]; /* temporary name buffer */
char *anames[NATTR]; /* Names of the attributes created */
iter_info info; /* Custom iteration information */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Attribute Iteration Functionality\n"));
/* Create the test file with the datasets */
file = H5Fcreate(DATAFILE, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
CHECK(file, FAIL, "H5Fcreate");
filespace = H5Screate(H5S_SCALAR);
CHECK(filespace, FAIL, "H5Screate");
dataset = H5Dcreate2(file, "Dataset", H5T_NATIVE_INT, filespace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
for(i = 0; i < NATTR; i++) {
sprintf(name, "Attribute %02d", i);
attribute = H5Acreate2(dataset, name, H5T_NATIVE_INT, filespace, H5P_DEFAULT, H5P_DEFAULT);
CHECK(attribute, FAIL, "H5Acreate2");
/* Keep a copy of the attribute names around for later */
anames[i] = HDstrdup(name);
CHECK(anames[i], NULL, "strdup");
ret = H5Aclose(attribute);
CHECK(ret, FAIL, "H5Aclose");
} /* end for */
/* Close everything up */
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
ret = H5Sclose(filespace);
CHECK(ret, FAIL, "H5Sclose");
ret = H5Fclose(file);
CHECK(ret, FAIL, "H5Fclose");
/* Iterate through the attributes on the dataset in various ways */
file = H5Fopen(DATAFILE, H5F_ACC_RDONLY, fapl);
CHECK(file, FAIL, "H5Fopen");
dataset = H5Dopen2(file, "Dataset", H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dopen2");
/* Test invalid indices for starting iteration */
info.command = RET_ZERO;
/* Test skipping exactly as many attributes as there are */
idx = NATTR;
H5E_BEGIN_TRY {
ret = H5Aiterate2(dataset, H5_INDEX_NAME, H5_ITER_INC, &idx, aiter_cb, &info);
} H5E_END_TRY;
VERIFY(ret, FAIL, "H5Aiterate2");
/* Test skipping more attributes than there are */
idx = NATTR + 1;
H5E_BEGIN_TRY {
ret = H5Aiterate2(dataset, H5_INDEX_NAME, H5_ITER_INC, &idx, aiter_cb, &info);
} H5E_END_TRY;
VERIFY(ret, FAIL, "H5Aiterate2");
/* Test all attributes on dataset, when callback always returns 0 */
info.command = RET_ZERO;
idx = 0;
if((ret = H5Aiterate2(dataset, H5_INDEX_NAME, H5_ITER_INC, &idx, aiter_cb, &info)) > 0)
TestErrPrintf("Attribute iteration function didn't return zero correctly!\n");
/* Test all attributes on dataset, when callback always returns 1 */
/* This also tests the "restarting" ability, because the index changes */
info.command = RET_TWO;
idx = i = 0;
while((ret = H5Aiterate2(dataset, H5_INDEX_NAME, H5_ITER_INC, &idx, aiter_cb, &info)) > 0) {
/* Verify return value from iterator gets propagated correctly */
VERIFY(ret, 2, "H5Aiterate2");
/* Increment the number of times "2" is returned */
i++;
/* Verify that the index is the correct value */
VERIFY(idx, (unsigned)i, "H5Aiterate2");
/* Don't check name when new format is used */
if(!new_format) {
/* Verify that the correct name is retrieved */
if(HDstrcmp(info.name, anames[(size_t)idx - 1]) != 0)
TestErrPrintf("%u: Attribute iteration function didn't set names correctly, info.name = '%s', anames[%u] = '%s'!\n", __LINE__, info.name, (unsigned)(idx - 1), anames[(size_t)idx - 1]);
} /* end if */
} /* end while */
VERIFY(ret, -1, "H5Aiterate2");
if(i != 50 || idx != 50)
TestErrPrintf("%u: Attribute iteration function didn't perform multiple iterations correctly!\n", __LINE__);
/* Test all attributes on dataset, when callback changes return value */
/* This also tests the "restarting" ability, because the index changes */
info.command = new_format ? RET_CHANGE2 : RET_CHANGE;
idx = i = 0;
while((ret = H5Aiterate2(dataset, H5_INDEX_NAME, H5_ITER_INC, &idx, aiter_cb, &info)) > 0) {
/* Verify return value from iterator gets propagated correctly */
VERIFY(ret, 1, "H5Aiterate2");
/* Increment the number of times "1" is returned */
i++;
/* Verify that the index is the correct value */
VERIFY(idx, (unsigned)i + 10, "H5Aiterate2");
/* Don't check name when new format is used */
if(!new_format) {
/* Verify that the correct name is retrieved */
if(HDstrcmp(info.name, anames[(size_t)idx - 1]) != 0)
TestErrPrintf("%u: Attribute iteration function didn't set names correctly, info.name = '%s', anames[%u] = '%s'!\n", __LINE__, info.name, (unsigned)(idx - 1), anames[(size_t)idx - 1]);
} /* end if */
} /* end while */
VERIFY(ret, -1, "H5Aiterate2");
if(i != 40 || idx != 50)
TestErrPrintf("%u: Attribute iteration function didn't perform multiple iterations correctly!\n", __LINE__);
ret=H5Fclose(file);
CHECK(ret, FAIL, "H5Fclose");
ret=H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
/* Free the attribute names */
for(i=0; i< NATTR; i++)
HDfree(anames[i]);
} /* test_iter_attr() */
/****************************************************************
**
** test_iter_group(): Test group iteration functionality
**
****************************************************************/
static void
test_iter_group(hid_t fapl, hbool_t new_format)
{
hid_t file; /* File ID */
hid_t dataset; /* Dataset ID */
hid_t datatype; /* Common datatype ID */
hid_t filespace; /* Common dataspace ID */
hid_t root_group,grp; /* Root group ID */
int i; /* counting variable */
hsize_t idx; /* Index in the group */
char name[NAMELEN]; /* temporary name buffer */
char *lnames[NDATASETS + 2];/* Names of the links created */
char dataset_name[NAMELEN]; /* dataset name */
iter_info info; /* Custom iteration information */
H5G_info_t ginfo; /* Buffer for querying object's info */
herr_t ret; /* Generic return value */
/* Output message about test being performed */
MESSAGE(5, ("Testing Group Iteration Functionality\n"));
/* Create the test file with the datasets */
file = H5Fcreate(DATAFILE, H5F_ACC_TRUNC, H5P_DEFAULT, fapl);
CHECK(file, FAIL, "H5Fcreate");
/* Test iterating over empty group */
info.command = RET_ZERO;
idx = 0;
ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info);
VERIFY(ret, SUCCEED, "H5Literate");
datatype = H5Tcopy(H5T_NATIVE_INT);
CHECK(datatype, FAIL, "H5Tcopy");
filespace=H5Screate(H5S_SCALAR);
CHECK(filespace, FAIL, "H5Screate");
for(i=0; i< NDATASETS; i++) {
sprintf(name,"Dataset %d",i);
dataset = H5Dcreate2(file, name, datatype, filespace, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(dataset, FAIL, "H5Dcreate2");
/* Keep a copy of the dataset names around for later */
lnames[i] = HDstrdup(name);
CHECK(lnames[i], NULL, "strdup");
ret = H5Dclose(dataset);
CHECK(ret, FAIL, "H5Dclose");
} /* end for */
/* Create a group and named datatype under root group for testing */
grp = H5Gcreate2(file, "grp", H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Gcreate2");
lnames[NDATASETS] = HDstrdup("grp");
CHECK(lnames[NDATASETS], NULL, "strdup");
ret = H5Tcommit2(file, "dtype", datatype, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Tcommit2");
lnames[NDATASETS + 1] = HDstrdup("dtype");
CHECK(lnames[NDATASETS], NULL, "strdup");
/* Close everything up */
ret = H5Tclose(datatype);
CHECK(ret, FAIL, "H5Tclose");
ret = H5Gclose(grp);
CHECK(ret, FAIL, "H5Gclose");
ret = H5Sclose(filespace);
CHECK(ret, FAIL, "H5Sclose");
ret = H5Fclose(file);
CHECK(ret, FAIL, "H5Fclose");
/* Sort the dataset names */
HDqsort(lnames, (size_t)(NDATASETS + 2), sizeof(char *), iter_strcmp);
/* Iterate through the datasets in the root group in various ways */
file = H5Fopen(DATAFILE, H5F_ACC_RDONLY, fapl);
CHECK(file, FAIL, "H5Fopen");
/* These two functions, H5Oget_info_by_idx and H5Lget_name_by_idx, actually
* iterate through B-tree for group members in internal library design.
*/
root_group = H5Gopen2(file, "/", H5P_DEFAULT);
CHECK(root_group, FAIL, "H5Gopen2");
ret = H5Gget_info(root_group, &ginfo);
CHECK(ret, FAIL, "H5Gget_info");
VERIFY(ginfo.nlinks, (NDATASETS + 2), "H5Gget_info");
for(i = 0; i< (int)ginfo.nlinks; i++) {
H5O_info_t oinfo; /* Object info */
ret = (herr_t)H5Lget_name_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, dataset_name, (size_t)NAMELEN, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Lget_name_by_idx");
ret = H5Oget_info_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Oget_info_by_idx");
} /* end for */
H5E_BEGIN_TRY {
ret = (herr_t)H5Lget_name_by_idx(root_group, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)(NDATASETS+3), dataset_name, (size_t)NAMELEN, H5P_DEFAULT);
} H5E_END_TRY;
VERIFY(ret, FAIL, "H5Lget_name_by_idx");
ret = H5Gclose(root_group);
CHECK(ret, FAIL, "H5Gclose");
/* These two functions, H5Oget_info_by_idx and H5Lget_name_by_idx, actually
* iterate through B-tree for group members in internal library design.
* (Same as test above, but with the file ID instead of opening the root group)
*/
ret = H5Gget_info(file, &ginfo);
CHECK(ret, FAIL, "H5Gget_info");
VERIFY(ginfo.nlinks, NDATASETS + 2, "H5Gget_info");
for(i = 0; i< (int)ginfo.nlinks; i++) {
H5O_info_t oinfo; /* Object info */
ret = (herr_t)H5Lget_name_by_idx(file, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, dataset_name, (size_t)NAMELEN, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Lget_name_by_idx");
ret = H5Oget_info_by_idx(file, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)i, &oinfo, H5P_DEFAULT);
CHECK(ret, FAIL, "H5Oget_info_by_idx");
} /* end for */
H5E_BEGIN_TRY {
ret = (herr_t)H5Lget_name_by_idx(file, ".", H5_INDEX_NAME, H5_ITER_INC, (hsize_t)(NDATASETS + 3), dataset_name, (size_t)NAMELEN, H5P_DEFAULT);
} H5E_END_TRY;
VERIFY(ret, FAIL, "H5Lget_name_by_idx");
/* Test invalid indices for starting iteration */
info.command = RET_ZERO;
idx = (hsize_t)-1;
H5E_BEGIN_TRY {
ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info);
} H5E_END_TRY;
VERIFY(ret, FAIL, "H5Literate");
/* Test skipping exactly as many entries as in the group */
idx = NDATASETS + 2;
H5E_BEGIN_TRY {
ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info);
} H5E_END_TRY;
VERIFY(ret, FAIL, "H5Literate");
/* Test skipping more entries than are in the group */
idx = NDATASETS + 3;
H5E_BEGIN_TRY {
ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info);
} H5E_END_TRY;
VERIFY(ret, FAIL, "H5Literate");
/* Test all objects in group, when callback always returns 0 */
info.command = RET_ZERO;
idx = 0;
if((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0)
TestErrPrintf("Group iteration function didn't return zero correctly!\n");
/* Test all objects in group, when callback always returns 1 */
/* This also tests the "restarting" ability, because the index changes */
info.command = RET_TWO;
idx = i = 0;
while((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) > 0) {
/* Verify return value from iterator gets propagated correctly */
VERIFY(ret, 2, "H5Literate");
/* Increment the number of times "2" is returned */
i++;
/* Verify that the index is the correct value */
VERIFY(idx, (hsize_t)i, "H5Literate");
if(idx > (NDATASETS + 2))
TestErrPrintf("Group iteration function walked too far!\n");
/* Verify that the correct name is retrieved */
if(HDstrcmp(info.name, lnames[(size_t)(idx - 1)]) != 0)
TestErrPrintf("Group iteration function didn't return name correctly for link - lnames[%u] = '%s'!\n", (unsigned)(idx - 1), lnames[(size_t)(idx - 1)]);
} /* end while */
VERIFY(ret, -1, "H5Literate");
if(i != (NDATASETS + 2))
TestErrPrintf("%u: Group iteration function didn't perform multiple iterations correctly!\n", __LINE__);
/* Test all objects in group, when callback changes return value */
/* This also tests the "restarting" ability, because the index changes */
info.command = new_format ? RET_CHANGE2 : RET_CHANGE;
idx = i = 0;
while((ret = H5Literate(file, H5_INDEX_NAME, H5_ITER_INC, &idx, liter_cb, &info)) >= 0) {
/* Verify return value from iterator gets propagated correctly */
VERIFY(ret, 1, "H5Literate");
/* Increment the number of times "1" is returned */
i++;
/* Verify that the index is the correct value */
VERIFY(idx, (hsize_t)(i + 10), "H5Literate");
if(idx > (NDATASETS + 2))
TestErrPrintf("Group iteration function walked too far!\n");
/* Verify that the correct name is retrieved */
if(HDstrcmp(info.name, lnames[(size_t)(idx - 1)]) != 0)
TestErrPrintf("Group iteration function didn't return name correctly for link - lnames[%u] = '%s'!\n", (unsigned)(idx - 1), lnames[(size_t)(idx - 1)]);
} /* end while */
VERIFY(ret, -1, "H5Literate");
if(i != 42 || idx != 52)
TestErrPrintf("%u: Group iteration function didn't perform multiple iterations correctly!\n", __LINE__);
ret = H5Fclose(file);
CHECK(ret, FAIL, "H5Fclose");
/* Free the dataset names */
for(i = 0; i< (NDATASETS + 2); i++)
HDfree(lnames[i]);
} /* test_iter_group() */
/*-------------------------------------------------------------------------
* Function: parse_command_line
*
* Purpose: Parses command line and sets up global variable to control output
*
* Return: Success: 0
*
* Failure: -1
*
* Programmer: Elena Pourmal
* Saturday, August 12, 2006
*
*-------------------------------------------------------------------------
*/
static struct handler_t *
parse_command_line(int argc, const char *argv[])
{
int opt, i;
struct handler_t *hand;
/* Allocate space to hold the command line info */
hand = (struct handler_t *)calloc((size_t)argc, sizeof(struct handler_t));
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
switch ((char)opt) {
case 'A':
display_all = FALSE;
display_attr = TRUE;
break;
case 'F':
display_all = FALSE;
display_file_metadata = TRUE;
break;
case 'f':
display_all = FALSE;
display_file = TRUE;
break;
case 'G':
display_all = FALSE;
break;
case 'g':
display_all = FALSE;
display_group = TRUE;
break;
case 'T':
display_all = FALSE;
display_dtype_metadata = TRUE;
break;
case 'D':
display_all = FALSE;
break;
case 'd':
display_all = FALSE;
display_dset = TRUE;
break;
case 'h':
usage(progname);
leave(EXIT_SUCCESS);
case 'V':
print_version(progname);
leave(EXIT_SUCCESS);
break;
case 'O':
display_object = TRUE;
for(i = 0; i < argc; i++)
if(!hand[i].obj) {
hand[i].obj = HDstrdup(opt_arg);
break;
} /* end if */
break;
default:
usage(progname);
leave(EXIT_FAILURE);
} /* end switch */
} /* end while */
/* check for file name to be processed */
if (argc <= opt_ind) {
error_msg(progname, "missing file name\n");
usage(progname);
leave(EXIT_FAILURE);
} /* end if */
return hand;
}
/*
* Function: h5_set_info_object
* Purpose: Process environment variables setting to set up MPI Info
* object.
* Return: 0 if all is fine; otherwise non-zero.
* Programmer: Albert Cheng, 2002/05/21.
* Modifications:
* Bill Wendling, 2002/05/31
* Modified so that the HDF5_MPI_INFO environment variable can
* be a semicolon separated list of "key=value" pairings. Most
* of the code is to remove any whitespaces which might be
* surrounding the "key=value" pairs.
*/
int
h5_set_info_object(void)
{
char *envp; /* environment pointer */
int ret_value=0;
/* handle any MPI INFO hints via $HDF5_MPI_INFO */
if ((envp = getenv("HDF5_MPI_INFO")) != NULL){
char *next, *valp;
valp = envp = next = HDstrdup(envp);
if (!valp) return 0;
/* create an INFO object if not created yet */
if (h5_io_info_g == MPI_INFO_NULL)
MPI_Info_create(&h5_io_info_g);
do {
size_t len;
char *key_val, *endp, *namep;
if (*valp == ';')
valp++;
/* copy key/value pair into temporary buffer */
len = strcspn(valp, ";");
next = &valp[len];
key_val = (char *)HDcalloc(1, len + 1);
/* increment the next pointer past the terminating semicolon */
if (*next == ';')
++next;
namep = HDstrncpy(key_val, valp, len);
/* pass up any beginning whitespaces */
while (*namep && (*namep == ' ' || *namep == '\t'))
namep++;
if (!*namep) continue; /* was all white space, so move to next k/v pair */
/* eat up any ending white spaces */
endp = &namep[HDstrlen(namep) - 1];
while (endp && (*endp == ' ' || *endp == '\t'))
*endp-- = '\0';
/* find the '=' */
valp = HDstrchr(namep, '=');
if (valp != NULL) { /* it's a valid key/value pairing */
char *tmp_val = valp + 1;
/* change '=' to \0, move valp down one */
*valp-- = '\0';
/* eat up ending whitespace on the "key" part */
while (*valp == ' ' || *valp == '\t')
*valp-- = '\0';
valp = tmp_val;
/* eat up beginning whitespace on the "value" part */
while (*valp == ' ' || *valp == '\t')
*valp++ = '\0';
/* actually set the darned thing */
if (MPI_SUCCESS != MPI_Info_set(h5_io_info_g, namep, valp)) {
printf("MPI_Info_set failed\n");
ret_value = -1;
}
}
valp = next;
HDfree(key_val);
} while (next && *next);
HDfree(envp);
}
return ret_value;
}
/*-------------------------------------------------------------------------
* Function: process_cmpd_fields
*
* Purpose: To check whether the fields selected in "g_list_of_fields"
* are valid fields associated with the dataset.
*
* Return: 0 on success; negative on failure
*
* Programmer: Vailin Choi; August 2010
*
*-------------------------------------------------------------------------
*/
static herr_t
process_cmpd_fields(hid_t fid, char *dsetname)
{
hid_t did=-1; /* dataset id */
hid_t dtid=-1, tid=-1; /* dataset's data type id */
size_t len; /* number of comma-separated fields in "g_list_of_fields" */
herr_t ret_value = SUCCEED; /* Return value */
HDassert(g_list_of_fields && *g_list_of_fields);
/* Open the dataset */
if((did = H5Dopen2(fid, dsetname, H5P_DEFAULT)) < 0) {
error_msg("error in opening dataset \"%s\"\n", dsetname);
ret_value = FAIL;
goto done;
}
/* Get the dataset's datatype */
if(((dtid = H5Dget_type(did)) < 0) || (tid = H5Tget_native_type(dtid, H5T_DIR_DEFAULT)) < 0) {
error_msg("error in getting dataset's datatype\n");
ret_value = FAIL;
goto done;
}
/* Check to make sure that the dataset's datatype is compound type */
if(H5Tget_class(dtid) != H5T_COMPOUND) {
error_msg("dataset should be compound type for <list_of_fields>\n");
ret_value = FAIL;
goto done;
}
/* Make a copy of "g_list_of_fields" */
if((g_dup_fields = HDstrdup(g_list_of_fields)) == NULL) {
error_msg("error in duplicating g_list_of_fields\n");
ret_value = FAIL;
goto done;
}
/* Estimate the number of comma-separated fields in "g_list of_fields" */
len = HDstrlen(g_list_of_fields)/2 + 2;
/* Allocate memory for a list vector of H5LD_memb_t structures to store "g_list_of_fields" info */
if((g_listv = (H5LD_memb_t **)HDcalloc(len, sizeof(H5LD_memb_t *))) == NULL) {
error_msg("error in allocating memory for H5LD_memb_t\n");
ret_value = FAIL;
goto done;
}
/* Process and store info for "g_listv" */
if(H5LD_construct_vector(g_dup_fields, g_listv, tid) < 0) {
error_msg("error in processing <list_of_fields>\n");
ret_value = FAIL;
goto done;
}
/* Will free memory for g_listv and g_dup_fields when exiting from h5watch */
done:
/* Closing */
H5E_BEGIN_TRY
H5Tclose(dtid);
H5Tclose(tid);
H5Dclose(did);
H5E_END_TRY
return(ret_value);
} /* process_cmpd_fields() */
/*-------------------------------------------------------------------------
* Function: parse_command_line
*
* Purpose: Parse the command line for the h5dumper.
*
* Return: Success: EXIT_SUCCESS;
*
* Failure: Exits function with EXIT_FAILURE value.
*
*-------------------------------------------------------------------------
*/
static int
parse_command_line(int argc, const char *argv[])
{
int opt = FALSE;
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
switch((char)opt) {
case 'o':
output_file = HDstrdup(opt_arg);
if (output_file)
h5tools_set_data_output_file(output_file, 1);
break;
case 'i':
input_file = HDstrdup(opt_arg);
if (input_file)
h5tools_set_input_file(input_file, 1);
break;;
case 'u':
ub_file = HDstrdup(opt_arg);
if (ub_file)
h5tools_set_output_file(ub_file, 1);
else
rawoutstream = stdout;
break;
case 'd':
do_delete = TRUE;
break;
case 'h':
usage(h5tools_getprogname());
h5tools_setstatus(EXIT_SUCCESS);
goto done;
case 'V':
print_version (h5tools_getprogname());
h5tools_setstatus(EXIT_SUCCESS);
goto done;
case '?':
default:
usage(h5tools_getprogname());
h5tools_setstatus(EXIT_FAILURE);
goto done;
}
}
return EXIT_SUCCESS;
done:
if(input_file)
HDfree(input_file);
if(output_file)
HDfree(output_file);
if(ub_file)
HDfree(ub_file);
return EXIT_FAILURE;
}
/*-------------------------------------------------------------------------
* Function: parse_command_line
*
* Purpose: Parses command line and sets up global variable to control output
*
* Return: Success: 0
*
* Failure: -1
*
* Programmer: Elena Pourmal
* Saturday, August 12, 2006
*
*-------------------------------------------------------------------------
*/
static struct handler_t *
parse_command_line(int argc, const char *argv[])
{
int opt, i;
struct handler_t *hand = NULL;
/* Allocate space to hold the command line info */
if((hand = (struct handler_t *)HDcalloc((size_t)argc, sizeof(struct handler_t)))==NULL) {
error_msg("unable to parse command line arguments \n");
goto error;
}
/* parse command line options */
while ((opt = get_option(argc, argv, s_opts, l_opts)) != EOF) {
switch ((char)opt) {
case 'h':
usage(h5tools_getprogname());
h5tools_setstatus(EXIT_SUCCESS);
if (hand) {
for (i = 0; i < argc; i++)
if(hand[i].obj) {
free(hand[i].obj);
hand[i].obj=NULL;
}
free(hand);
hand = NULL;
}
goto done;
break;
case 'V':
print_version(h5tools_getprogname());
h5tools_setstatus(EXIT_SUCCESS);
if (hand) {
for (i = 0; i < argc; i++)
if(hand[i].obj) {
free(hand[i].obj);
hand[i].obj=NULL;
}
free(hand);
hand = NULL;
}
goto done;
break;
case 'F':
display_all = FALSE;
display_file_metadata = TRUE;
break;
case 'f':
display_all = FALSE;
display_file = TRUE;
break;
case 'G':
display_all = FALSE;
display_group_metadata = TRUE;
break;
case 'g':
display_all = FALSE;
display_group = TRUE;
break;
case 'D':
display_all = FALSE;
display_dset_metadata = TRUE;
break;
case 'd':
display_all = FALSE;
display_dset = TRUE;
break;
case 'T':
display_all = FALSE;
display_dset_dtype_meta = TRUE;
break;
case 'A':
display_all = FALSE;
display_attr = TRUE;
break;
case 'S':
display_all = FALSE;
display_summary = TRUE;
break;
case 'O':
display_all = FALSE;
display_object = TRUE;
for(i = 0; i < argc; i++)
if(!hand[i].obj) {
hand[i].obj = HDstrdup(opt_arg);
break;
} /* end if */
break;
default:
usage(h5tools_getprogname());
h5tools_setstatus(EXIT_FAILURE);
goto error;
} /* end switch */
} /* end while */
/* check for file name to be processed */
if (argc <= opt_ind) {
error_msg("missing file name\n");
usage(h5tools_getprogname());
h5tools_setstatus(EXIT_FAILURE);
goto error;
} /* end if */
done:
return hand;
error:
if (hand) {
for (i = 0; i < argc; i++)
if(hand[i].obj) {
free(hand[i].obj);
hand[i].obj=NULL;
}
free(hand);
hand = NULL;
}
h5tools_setstatus(EXIT_FAILURE);
return hand;
}
