TGUINode * GUI_CreateNode( void ) {
TGUINode * node = Memory_New( TGUINode );
node->visible = true;
node->color = Vec3_Set( 1.0f, 1.0f, 1.0f );
List_Add( &gGUINodeList, node );
return node;
}
Process* ProcessManager::CreateProcess(char* appname, UINT32 processType)
{
FILE file;
/* open file */
file = volOpenFile(appname);
if (file.flags == FS_INVALID)
return 0;
if ((file.flags & FS_DIRECTORY) == FS_DIRECTORY)
return 0;
pdirectory* addressSpace = 0;
addressSpace = vmmngr_createAddressSpace();
if (!addressSpace) {
volCloseFile(&file);
return 0;
}
mapKernelSpace(addressSpace);
Process* pProcess = new Process();
pProcess->TaskID = ProcessManager::GetInstance()->GetNextProcessId();
pProcess->pPageDirectory = addressSpace;
pProcess->dwPriority = 1;
pProcess->dwRunState = PROCESS_STATE_ACTIVE;
Thread* pThread = CreateThread(pProcess, &file);
List_Add(&pProcess->pThreadQueue, "", pThread);
return pProcess;
}
List_ptr ME_Regions_F1(MEdge_ptr e) {
MEdge_Adj_F1 *adj;
int i, j, nr, nf;
List_ptr eregs;
MFace_ptr eface;
MRegion_ptr freg;
adj = (MEdge_Adj_F1 *) e->adj;
nf = List_Num_Entries(adj->efaces);
eregs = List_New(nf);
nr = 0;
for (i = 0; i < nf; i++) {
eface = List_Entry(adj->efaces,i);
for (j = 0; j < 2; j++) {
freg = MF_Region(eface,j);
if (freg) {
int inlist;
inlist = List_Contains(eregs,freg);
if (!inlist) {
List_Add(eregs,freg);
nr++;
}
}
}
}
if (nr)
return eregs;
else {
List_Delete(eregs);
return 0;
}
}
List_ptr MF_Vertices_R2(MFace_ptr f, int dir, MVertex_ptr v0) {
MFace_Adj_R2 *adj;
List_ptr fverts;
int i, k=0, nv, fnd=0;
adj = (MFace_Adj_R2 *) f->adj;
nv = List_Num_Entries(adj->fvertices);
if (!v0) {
if (dir)
fverts = List_Copy(adj->fvertices);
else {
fverts = List_New(nv);
for (i = nv-1; i >= 0; i--)
List_Add(fverts,List_Entry(adj->fvertices,i));
}
}
else {
for (i = 0; i < nv; i++) {
if (List_Entry(adj->fvertices,i) == v0) {
fnd = 1;
k = i;
break;
}
}
if (!fnd) {
MSTK_Report("MF_Vertices_R2","Cannot find starting vertex",MSTK_ERROR);
return 0;
}
fverts = List_New(nv);
for (i = 0; i < nv; i++) {
if (dir)
List_Add(fverts,List_Entry(adj->fvertices,(k+i)%nv));
else
List_Add(fverts,List_Entry(adj->fvertices,(k+nv-i)%nv));
}
}
return fverts;
}
List_ptr ME_Faces_R3R4(MEdge_ptr e) {
int i, j, nef, nvf, nv, found;
List_ptr efaces, vfaces, fverts;
MFace_ptr vface;
MVertex_ptr ev[2];
nef = 0;
efaces = List_New(10);
for (i = 0; i < 2; i++)
ev[i] = ME_Vertex(e,i);
vfaces = MV_Faces(ev[0]);
nvf = List_Num_Entries(vfaces);
/* Go through all faces connected to ev[0] and pick out ones which
use this edge. Do this by checking if ev[0] and ev[1] are
consecutive vertices in the face */
for (i = 0; i < nvf; i++) {
vface = List_Entry(vfaces,i);
/* Get vertices of i'th face connected to ev[0] */
fverts = MF_Vertices(vface,1,0);
nv = MF_Num_Vertices(vface);
/* If the j'th vertex is ev[0], check if the next or the
previous vertex is ev[1]; If it is then the edge is used by
the face */
found = 0;
for (j = 0; j < nv; j++) {
if (ev[0] == List_Entry(fverts,j) &&
(ev[1] == List_Entry(fverts,(j+1)%nv) ||
ev[1] == List_Entry(fverts,(j+nv-1)%nv))) {
found = 1;
break;
}
}
List_Delete(fverts);
if (found) {
List_Add(efaces,vface);
nef++;
}
}
List_Delete(vfaces);
if (nef)
return efaces;
else {
List_Delete(efaces);
return 0;
}
}
Process* ProcessManager::CreateSystemProcess()
{
Process* pProcess = new Process();
pProcess->TaskID = ProcessManager::GetInstance()->GetNextProcessId();
pProcess->pPageDirectory = vmmngr_get_directory();
pProcess->dwProcessType = PROCESS_KERNEL;
mapKernelSpace(pProcess->pPageDirectory);
pProcess->dwPriority = 1;
pProcess->dwRunState = PROCESS_STATE_ACTIVE;
Thread* pThread = CreateMemoryThread(pProcess, StartRoutine);
List_Add(&pProcess->pThreadQueue, "", pThread);
List_Add(&pProcessQueue, "", pProcess);
DebugPrintf("\nCreate Success System Process");
return pProcess;
}
void test_getNext_will_update_the_pointer_point_to_the_next_location()
{
LinkedList *testList = createLinkedList();
Element *elem0 = malloc(sizeof(Element));
Element *elem1 = malloc(sizeof(Element));
Element *elem2 = malloc(sizeof(Element));
Element *testElement;
List_Add(elem0,testList);
List_Add(elem1,testList);
List_Add(elem2,testList);
testElement = testList->head;
TEST_ASSERT_EQUAL(elem0,testElement);
testElement = getNext(testElement);
TEST_ASSERT_EQUAL(elem1,testElement);
testElement = getNext(testElement);
TEST_ASSERT_EQUAL(elem2,testElement);
testElement = getNext(testElement);
TEST_ASSERT_EQUAL(NULL,testElement);
List_DestroyList(testList);
}
bool ProcessManager::ExecuteProcess(Process* pProcess)
{
//pTest = ProcessManager::CreateProcess("proc.exe");
if (pProcess == 0)
return false;
int entryPoint = 0;
unsigned int procStack = 0;
if (pProcess->TaskID == PROC_INVALID_ID)
return false;
if (!pProcess->pPageDirectory)
return false;
Thread* pThread = (Thread*)List_GetData(pProcess->pThreadQueue, "", 0);
/* get esp and eip of main thread */
entryPoint = pThread->frame.eip;
procStack = pThread->frame.esp;
DebugPrintf("\neip : %x", pThread->frame.eip);
DebugPrintf("\npage directory : %x", pProcess->pPageDirectory);
__asm cli
ProcessManager::GetInstance()->g_pCurProcess = pProcess;
List_Add(&pProcessQueue, "", pProcess);
__asm sti
pmmngr_load_PDBR((physical_addr)pProcess->pPageDirectory);
__asm {
mov ax, 0x23; user mode data selector is 0x20 (GDT entry 3).Also sets RPL to 3
mov ds, ax
mov es, ax
mov fs, ax
mov gs, ax
;
; create stack frame
;
push 0x23; SS, notice it uses same selector as above
push[procStack]; stack
push 0x200; EFLAGS
push 0x1b; CS, user mode code selector is 0x18.With RPL 3 this is 0x1b
push[entryPoint]; EIP
iretd
}
return true;
}
void GUI_Attach( TGUINode * node, TGUINode * parent ) {
if( parent ) {
node->parent = parent;
List_Add( &parent->childs, node );
// special attachment for compound objects
if( node->button ){
GUI_Attach( node->button->background, parent );
GUI_Attach( node->button->text, parent );
} else if( node->slider ){
GUI_Attach( node->slider->background, parent );
}
} else { // detach
if( node->parent ) {
List_Remove( &node->parent->childs, node );
}
node->parent = 0;
}
}
Process* ProcessManager::CreateMemoryProcess(void(*lpStartAddress)())
{
Process* pProcess = new Process();
pProcess->TaskID = 1;
pProcess->pPageDirectory = vmmngr_createAddressSpace();
mapKernelSpace(pProcess->pPageDirectory);
pProcess->dwPriority = 1;
pProcess->dwRunState = PROCESS_STATE_ACTIVE;
Thread* pThread = CreateMemoryThread(pProcess, lpStartAddress);
List_Add(&pProcess->pThreadQueue, "", pThread);
//List_Add(&pProcessQueue, "", pProcess);
DebugPrintf("\nCreate Success Memory Task");
return pProcess;
}
List_ptr Hash_Entries(Hash_ptr h) {
unsigned int ne, i, p, size;
int t;
void *ent;
List_ptr l;
pvtHash_Get_Pars(h, &ne, &p, &t);
size = 1 << p;
l = List_New(ne);
for (i=0; i<size; i++) {
ent = h->entry[i];
while (ent) {
List_Add(l, ent);
ent = MEnt_NextInHash(ent);
}
}
return l;
}
static AwaError ClientSubscribeOperation_Add(AwaClientSubscribeOperation * operation, AwaClientSubscription * subscription, bool cancel)
{
AwaError result = AwaError_Unspecified;
if (operation != NULL)
{
if (subscription != NULL)
{
AwaClientSubscription * existingSubscription = NULL;
Map_Get(operation->Subscribers, subscription->Path,
(void **)&existingSubscription);
if (existingSubscription == NULL)
{
if (Map_Put(operation->Subscribers, subscription->Path, subscription))
{
List_Add(subscription->Operations, operation);
subscription->Cancel = cancel;
result = AwaError_Success;
}
else
{
result = LogErrorWithEnum(AwaError_Internal, "Failed to add subscription to operation");
}
}
else
{
result = LogErrorWithEnum(AwaError_OperationInvalid, "A subscription already exists for path %s in the given operation.", subscription->Path);
}
}
else
{
result = LogErrorWithEnum(AwaError_SubscriptionInvalid, "Subscription is NULL");
}
}
else
{
result = LogErrorWithEnum(AwaError_OperationInvalid, "Operation is NULL");
}
return result;
}
void test_getNext_will_update_the_pointer_point_to_the_next_location_for_1000_elements()
{
LinkedList *testList = createLinkedList();
Element elem[1000];
Element *testElement;
int i;
for(i=0;i<1000;i++)
{
List_Add(&elem[i],testList);
}
testElement = testList->head;
for(i=0;i<1000;i++)
{
TEST_ASSERT_EQUAL(&elem[i],testElement);
testElement = getNext(testElement);
}
TEST_ASSERT_EQUAL(NULL,testElement);
List_DestroyList(testList);
}
void MF_Set_Vertices_R2(MFace_ptr f, int n, MVertex_ptr *v) {
MFace_Adj_R2 *adj;
int i;
adj = (MFace_Adj_R2 *) f->adj;
if (adj->fvertices)
List_Delete(adj->fvertices);
adj->fvertices = List_New(n);
for (i = 0; i < n; i++) {
#ifdef DEBUG
if (MF_Mesh(f) != MV_Mesh(v[i]))
MSTK_Report("MF_Set_Vertices_R2",
"Face and Vertex are not from the same mesh",
MSTK_FATAL);
#endif
List_Add(adj->fvertices,v[i]);
}
}
void test_getNext_function_properly_through_iterator()
{
LinkedList *testList = createLinkedList();
Iterator *iter;
Element elem[1000];
int i;
for(i=0;i<1000;i++)
{
List_Add(&elem[i],testList);
}
//testElement = testList->head;
iter = getIterator(testList);
for(i=0;i<1000;i++)
{
TEST_ASSERT_EQUAL(&elem[i],iter->current);
iter->current = iter->next(iter->current);
}
TEST_ASSERT_EQUAL(NULL,iter->current);
List_DestroyList(testList);
destroyIterator(iter);
}
int MESH_BuildFaceClassfn(Mesh_ptr mesh, int use_geometry) {
int i, j, k, idx, idx2, fnd, gfid, gfid2, gdim;
int ngfaces, ngfalloc, grid0, grid1;
int max_gface_id, processedmk, submk;
int nfe, nef, nbf, nfr, nsub, *gfids, (*gfregids)[2];
double PI=3.141592, ang, COSSHARPANG;
MEdge_ptr edge;
MFace_ptr face, subface, adjface;
MRegion_ptr freg0, freg1;
List_ptr fregs, fedges, efaces, ebfaces, gffaces, subfaces;
COSSHARPANG = cos(9*PI/12); /* 135 degrees */
/* Verify that mesh faces on the boundary have classification
information; if not, assign all faces to the same model faces */
ngfaces = 0; ngfalloc = 10;
gfids = (int *) malloc(ngfalloc*sizeof(int));
gfregids = (int (*)[2]) malloc(ngfalloc*sizeof(int [2]));
/* Take stock of existing model face information */
max_gface_id = 0;
idx = 0;
while ((face = MESH_Next_Face(mesh,&idx))) {
gdim = MF_GEntDim(face);
if (gdim != 2)
continue;
gfid = MF_GEntID(face);
if (gfid) {
/* Has this model face been encountered? If not, add it to list
of model faces */
for (i = 0, fnd = 0; i < ngfaces; i++)
if (gfids[i] == gfid) {
fnd = 1;
break;
}
if (!fnd) {
if (gfid > max_gface_id)
max_gface_id = gfid;
if (ngfalloc == ngfaces) {
ngfalloc *= 2;
gfids = (int *) realloc(gfids,ngfalloc*sizeof(int));
gfregids = (int (*)[2])realloc(gfregids,ngfalloc*sizeof(int [2]));
}
gfids[ngfaces] = gfid;
gfregids[ngfaces][0] = gfregids[ngfaces][1] = 0;
fregs = MF_Regions(face);
if (fregs) {
nfr = List_Num_Entries(fregs);
freg0 = List_Entry(fregs,0);
gfregids[ngfaces][0] = MR_GEntID(freg0); /* NOTE 1 (see EOF) */
if (nfr == 2) {
freg1 = List_Entry(fregs,1);
gfregids[ngfaces][1] = MR_GEntID(freg1);
}
List_Delete(fregs);
}
ngfaces++;
}
}
}
/* Build new model face information based on adjacent model region info */
idx = 0;
while ((face = MESH_Next_Face(mesh,&idx))) {
gdim = MF_GEntDim(face);
gfid = MF_GEntID(face);
/* Face has no classification? Assign classification info */
/* Face classified as interior face? Verify */
freg0 = freg1 = NULL;
grid0 = grid1 = 0;
fregs = MF_Regions(face);
if (fregs) {
nfr = List_Num_Entries(fregs);
freg0 = List_Entry(fregs,0);
grid0 = MR_GEntID(freg0);
if (nfr == 2) {
freg1 = List_Entry(fregs,1);
grid1 = MR_GEntID(freg1);
}
List_Delete(fregs);
}
else
nfr = 0;
if (nfr == 2 && (grid0 == grid1)) {
/* Interior face */
MF_Set_GEntDim(face,3);
MF_Set_GEntID(face,grid0);
}
else {
/* Boundary face */
if (gdim > 2 || (gdim == 2 && gfid <= 0)) {
MF_Set_GEntDim(face,2);
/* Check if this type of face with these adjacent regions has
been encountered before; if it has, we just use the
existing model face id */
for (i = 0, fnd = 0; i < ngfaces; i++)
if ((gfregids[i][0] == grid0 && gfregids[i][1] == grid1) ||
(gfregids[i][0] == grid1 && gfregids[i][1] == grid0)) {
fnd = 1;
break;
}
if (fnd)
MF_Set_GEntID(face,gfids[i]);
else {
max_gface_id++;
MF_Set_GEntID(face,max_gface_id);
if (ngfalloc == ngfaces) {
ngfalloc *= 2;
gfids = (int *) realloc(gfids,ngfalloc*sizeof(int));
gfregids = (int (*)[2]) realloc(gfregids,ngfalloc*sizeof(int [2]));
}
gfids[ngfaces] = max_gface_id;
gfregids[ngfaces][0] = grid0;
gfregids[ngfaces][1] = grid1;
ngfaces++;
}
}
}
}
if (use_geometry == 1) {
/* Now assign model face IDs based on whether a sharp set of edges
enclose a set of faces */
for (i = 0; i < ngfaces; i++) {
/* Find all mesh faces with this model face id */
gffaces = List_New(10);
idx = 0;
while ((face = MESH_Next_Face(mesh,&idx))) {
if (MF_GEntDim(face) == 2 && MF_GEntID(face) == gfids[i])
List_Add(gffaces,face);
}
/* Process faces of this list and subdivide them into subfaces */
/* The way we do that is
1) we put an unprocessed face from the original list in a subface
list
2) we then add its neighboring faces to subface list if they are
of the same color (same model face id) and do not have a sharp
edge separating them from the current face
3) we then process the next face in the subface list
4) we are done if we cannot find any more neighbors of faces in
the subface list to add to the subface list
5) we then repeat steps 1 through 4 until we are left with no
more faces to process from the original list
*/
processedmk = MSTK_GetMarker();
nsub = 0;
idx = 0;
while ((face = List_Next_Entry(gffaces,&idx))) {
if (MEnt_IsMarked(face,processedmk))
continue;
/* Found a face in gffaces that has not been processed */
MEnt_Mark(face,processedmk);
submk = MSTK_GetMarker();
subfaces = List_New(10);
List_Add(subfaces,face);
MEnt_Mark(face,submk);
idx2 = 0;
while ((subface = List_Next_Entry(subfaces,&idx2))) {
gfid = MF_GEntID(subface);
fedges = MF_Edges(subface,1,0);
nfe = List_Num_Entries(fedges);
for (j = 0; j < nfe; j++) {
edge = List_Entry(fedges,j);
efaces = ME_Faces(edge);
nef = List_Num_Entries(efaces);
ebfaces = List_New(nef); /* list of boundary faces cnctd 2 edge */
for (k = 0; k < nef; k++) {
adjface = List_Entry(efaces,k);
if (MF_GEntDim(adjface) == 2)
List_Add(ebfaces,adjface);
}
List_Delete(efaces);
nbf = List_Num_Entries(ebfaces);
if (nbf == 2) {
/* we might be on a model face or on a model edge */
adjface = List_Entry(ebfaces,0);
if (adjface == subface)
adjface = List_Entry(ebfaces,1);
gfid2 = MF_GEntID(adjface);
if (gfid == gfid2) {
/* The two faces are of the same ID. If the angle
between them is not sharp they can be classified as
being on the same subface */
ang = MFs_DihedralAngle(subface,adjface,edge);
if (ang <= COSSHARPANG) {
/* Add face2 to subface list unless its already there */
if (!MEnt_IsMarked(adjface,submk)) {
List_Add(subfaces,adjface);
MEnt_Mark(adjface,submk);
}
}
else {
/* The two faces make a very sharp angle. We will
consider the edge b/w them to be a model edge */
/* Tag the edge as being on a model edge (we don't
know the model edge ID as yet) and continue */
ME_Set_GEntDim(edge,1);
ME_Set_GEntID(edge,0);
}
}
else {
/* we reached a model edge */
/* Tag the edge as being on a model edge (we don't know
the model edge ID as yet) and continue */
ME_Set_GEntDim(edge,1);
ME_Set_GEntID(edge,0);
}
}
else {
/* we reached a a model edge */
/* Tag the edge as being on a model edge (we don't know
the model edge ID as yet) and continue */
ME_Set_GEntDim(edge,1);
ME_Set_GEntID(edge,0);
}
List_Delete(ebfaces);
}
/* Finished processing all neighbors of the face */
List_Delete(fedges);
}
/* Now we have a list of faces which we believe constitutes a
model face by itself. If this is the first subface (which
means it could also be the entire model face originally
considered), leave the model face tag as it is. If not,
assign the faces in the subface a new model face ID */
if (nsub != 0) {
max_gface_id++;
idx2 = 0;
while ((subface = List_Next_Entry(subfaces,&idx2)))
MF_Set_GEntID(subface,max_gface_id);
}
nsub++;
/* Done with this subface */
idx2 = 0;
while ((subface = List_Next_Entry(subfaces,&idx2))) {
MEnt_Mark(subface,processedmk);
MEnt_Unmark(subface,submk);
}
MSTK_FreeMarker(submk);
List_Delete(subfaces);
}
List_Unmark(gffaces,processedmk);
MSTK_FreeMarker(processedmk);
List_Delete(gffaces);
}
} /* if use_geometry == 1 */
free(gfids);
free(gfregids);
return 1;
}
List_ptr MR_Vertices_FNR3R4(MRegion_ptr r) {
int i, j, n, ne, nf, mkr, found, idx;
int diradj0=0, diropp=0, fdir, fdir0, fdir1, allquad, alltri;
int nquads, ntris, itri0, itri1, iquad0;
MFace_ptr face=NULL, face0=NULL, fadj0=NULL, fopp=NULL;
MFace_ptr quad0=NULL, tri0=NULL, tri1=NULL;
MEdge_ptr edge, fedge00, upedge;
MVertex_ptr vert, rv0, rvopp0=NULL;
List_ptr rvertices, fverts, fedges0, adjfedges;
MRegion_Adj_FN *adj;
adj = (MRegion_Adj_FN *) r->adj;
nf = List_Num_Entries(adj->rfaces);
switch (r->mrtype) {
case TET:
/* Add vertices of first face to list of region vertices */
face0 = List_Entry(adj->rfaces,0); /* first face */
fdir0 = MR_FaceDir_i(r,0); /* Sense in which face is used in region */
rvertices = MF_Vertices(face0,!fdir0,0);
face = List_Entry(adj->rfaces,1);
fverts = MF_Vertices(face,1,0);
for (i = 0; i < 3; i++) {
vert = List_Entry(fverts,i);
if (!List_Contains(rvertices,vert)) {
List_Add(rvertices,vert);
break;
}
}
List_Delete(fverts);
return rvertices;
break;
case PRISM:
tri0 = NULL; itri0 = -1;
tri1 = NULL; itri1 = -1;
for (i = 0; i < nf; i++) {
face = List_Entry(adj->rfaces,i);
ne = MF_Num_Edges(face);
if (ne == 3) {
if (!tri0) {
tri0 = face;
itri0 = i;
}
else {
tri1 = face;
itri1 = i;
}
}
}
fdir0 = MR_FaceDir_i(r,itri0); /* Sense in which face is used in region */
rvertices = MF_Vertices(tri0,!fdir0,0);
/* find the vertical edge between vertex 0 of bottom triangle and
top triangle */
fdir1 = MR_FaceDir_i(r,itri1);
fverts = MF_Vertices(tri1,fdir1,0);
rv0 = List_Entry(rvertices,0); /* first vtx of region & bottom face */
for (i = 0; i < 3; i++) {
vert = List_Entry(fverts,i);
if (MVs_CommonEdge(rv0,vert)) {
List_Add(rvertices,vert);
List_Add(rvertices,List_Entry(fverts,(i+1)%3));
List_Add(rvertices,List_Entry(fverts,(i+2)%3));
break;
}
}
List_Delete(fverts);
return rvertices;
break;
case PYRAMID:
quad0 = NULL; iquad0 = -1;
tri0 = NULL; itri0 = -1;
for (i = 0; i < nf; i++) {
face = List_Entry(adj->rfaces,i);
ne = MF_Num_Edges(face);
if (ne == 4) {
if (!quad0) {
quad0 = face;
iquad0 = i;
}
}
else if (ne == 3) {
if (!tri0) {
tri0 = face;
itri0 = i;
}
}
}
fdir0 = MR_FaceDir_i(r,iquad0); /* Sense in which face is used in region */
rvertices = MF_Vertices(quad0,!fdir0,0);
fverts = MF_Vertices(tri0,1,0);
for (i = 0; i < 3; i++) {
vert = List_Entry(fverts,i);
if (!List_Contains(rvertices,vert)) { /* found apex vtx of pyramid */
List_Add(rvertices,vert);
break;
}
}
List_Delete(fverts);
return rvertices;
break;
case HEX:
face0 = List_Entry(adj->rfaces,0); /* face 0 */
fdir0 = MR_FaceDir_i(r,0); /* dir of face w.r.t. region */
/* Add vertices of first face */
rvertices = MF_Vertices(face0,!fdir0,0);
/* vertex 0 of region and of face 0 */
rv0 = List_Entry(rvertices,0);
/* Edges of face 0 */
fedges0 = MF_Edges(face0,!fdir0,rv0);
/* edge 0 of face 0 (wrt face dir pointing into the region) */
fedge00 = List_Entry(fedges0,0);
/* Get the face adjacent to edge 0 of face 0 and also the
opposite face, a face that has no edge common face 0 */
fopp = NULL; fadj0 = NULL;
found = 0;
for (i = 1; i < nf; i++) {
face = List_Entry(adj->rfaces,i);
/* Check if face uses any edge of face 0 */
for (j = 0, found = 0; j < 4; j++) {
edge = List_Entry(fedges0,j);
if (MF_UsesEntity(face,edge,1)) {
if (edge == fedge00) {
/* face uses edge 0 of face 0 (w.r.t. face dir pointing
into region) */
fadj0 = face;
diradj0 = MR_FaceDir_i(r,i);
}
found = 1;
break;
}
}
if (!found) {
fopp = face;
diropp = MR_FaceDir_i(r,i);
}
if (fopp && fadj0)
break;
}
if (!fopp) {
MSTK_Report("MR_Vertices_FNR3R4","Could not find opposite face",MSTK_ERROR);
List_Delete(fedges0);
List_Delete(rvertices);
return (void *) NULL;
}
/* edges of face adjacent to edge 0 of face 0 */
adjfedges = MF_Edges(fadj0,1,rv0);
/* edge connecting rv0 and vertex on opposite face */
upedge = diradj0 ? List_Entry(adjfedges,3): List_Entry(adjfedges,0);
#ifdef DEBUG
if (!ME_UsesEntity(upedge,rv0,0))
MSTK_Report("MR_Vertices_FNR3R4","Cannot find correct vertical edge",
MSTK_ERROR);
#endif
if (ME_Vertex(upedge,0) == rv0)
rvopp0 = ME_Vertex(upedge,1);
else {
rvopp0 = ME_Vertex(upedge,0);
}
List_Delete(fedges0);
List_Delete(adjfedges);
fverts = MF_Vertices(fopp,diropp,rvopp0);
for (i = 0; i < 4; i++)
List_Add(rvertices,List_Entry(fverts,i));
List_Delete(fverts);
return rvertices;
break;
default:
/* General Polyhedra */
mkr = MSTK_GetMarker();
/* Add vertices of first face */
face = List_Entry(adj->rfaces,0); /* first face */
fdir = MR_FaceDir_i(r,0); /* Sense in which face is used in region */
rvertices = MF_Vertices(face,!fdir,0);
List_Mark(rvertices,mkr);
for (i = 1; i < nf-1; i++) {
face = List_Entry(adj->rfaces,i);
fverts = MF_Vertices(face,1,0);
n = List_Num_Entries(fverts);
for (j = 0; j < n; j++) {
vert = List_Entry(fverts,j);
if (!MEnt_IsMarked(vert,mkr)) {
List_Add(rvertices,vert);
MEnt_Mark(vert,mkr);
}
}
List_Delete(fverts);
}
List_Unmark(rvertices,mkr);
MSTK_FreeMarker(mkr);
return rvertices;
}
return NULL;
}
MFace_ptr MR_Split_with_EdgeLoop(MRegion_ptr rsplit, int nfe, MEdge_ptr *fedges) {
Mesh_ptr mesh;
int i, j, idx1, idx2, fedirs[MAXPV2], rfdir_adj, curdir, edir, edir_adj;;
int gid, mkid, nrf1, nrf2, rfdirs1[MAXPF3], rfdirs2[MAXPF3];
MEdge_ptr fe;
MFace_ptr fnew, eface, rfarray1[MAXPF3], rfarray2[MAXPF3], curface;
MRegion_ptr rnew[2];
List_ptr felist, efaces;
#ifdef DEBUG
List_ptr redges;
#endif
gid = MR_GEntID(rsplit);
#ifdef DEBUG
/* check to make sure we got meaningful input */
redges = MR_Edges(rsplit);
for (i = 0; i < nfe; i++)
if (!List_Contains(redges,fedges[i]))
MSTK_Report("MR_Split","Input edges are not part of the region boundary",
MSTK_FATAL);
List_Delete(redges);
#endif
mesh = MR_Mesh(rsplit);
/* Fix a set of directions for the edges */
fedirs[0] = 1;
for (i = 1; i < nfe; i++) {
MVertex_ptr vprev, v0, v1;
vprev = ME_Vertex(fedges[i-1],fedirs[i-1]);
v0 = ME_Vertex(fedges[i],0);
v1 = ME_Vertex(fedges[i],1);
if (vprev == v0)
fedirs[i] = 1;
else if (vprev == v1)
fedirs[i] = 0;
else
MSTK_Report("MR_Split","Input edges do not form a loop as listed",
MSTK_FATAL);
}
/* Create the splitting face */
fnew = MF_New(mesh);
MF_Set_GEntDim(fnew,3);
MF_Set_GEntID(fnew,gid);
MF_Set_Edges(fnew,nfe,fedges,fedirs);
/* Collect info for the first region */
List_ptr processed_faces = List_New(0);
rfarray1[0] = fnew;
rfdirs1[0] = 1;
nrf1 = 1;
List_Add(processed_faces,rfarray1[0]);
i = 0;
while (i < nrf1) {
curface = rfarray1[i];
curdir = rfdirs1[i];
i++;
/* Get adjacent faces in region of current face and if they are
not already in the new region face list (not marked), then add
them */
felist = MF_Edges(curface,1,0);
idx1 = 0; j = 0;
while ((fe = List_Next_Entry(felist,&idx1))) {
edir = MF_EdgeDir_i(curface,j);
j++;
efaces = ME_Faces(fe);
if (curface != fnew && List_Contains(efaces,fnew)) {
/* we have come back to the starting or splitting face - don't
go across this edge */
List_Delete(efaces);
continue;
}
/* Add an adjacent unprocessed face of the region to the list of
faces for the new region */
idx2 = 0;
while ((eface = List_Next_Entry(efaces,&idx2))) {
if (eface == curface) continue;
if (List_Contains(processed_faces,eface)) continue;
if (!MR_UsesEntity(rsplit,eface,MFACE)) continue; /* does not belong to region */
edir_adj = MF_EdgeDir(eface,fe);
rfdir_adj = MR_FaceDir(rsplit,eface);
/* add adjacent face based on the check that if two adjacent faces of
region are used by the region in the same sense, then their common
edge should be used by the two faces in opposite senses (or the opposite
of both the conditions should be true) */
if ((edir != edir_adj && curdir == rfdir_adj) ||
(edir == edir_adj && curdir != rfdir_adj)) {
rfarray1[nrf1] = eface;
rfdirs1[nrf1] = rfdir_adj;
List_Add(processed_faces,rfarray1[nrf1]);
nrf1++;
break;
}
}
List_Delete(efaces);
}
List_Delete(felist);
}
/* collect info for the second region */
rfarray2[0] = fnew;
rfdirs2[0] = !rfdirs1[0];
nrf2 = 1;
List_Add(processed_faces,rfarray2[0]);
i = 0;
while (i < nrf2) {
curface = rfarray2[i];
curdir = rfdirs2[i];
i++;
/* Get adjacent faces in region of current face and if they are
not already in the new region face list (not marked), then add
them */
felist = MF_Edges(curface,1,0);
idx1 = 0; j = 0;
while ((fe = List_Next_Entry(felist,&idx1))) {
edir = MF_EdgeDir_i(curface,j);
j++;
efaces = ME_Faces(fe);
if (curface != fnew && List_Contains(efaces,fnew)) {
/* we have come back to the starting or splitting face - don't
go across this edge */
List_Delete(efaces);
continue;
}
/* Add an adjacent unprocessed face of the region to the list of
faces for the new region */
idx2 = 0;
while ((eface = List_Next_Entry(efaces,&idx2))) {
if (eface == curface) continue;
if (List_Contains(processed_faces,eface)) continue;
if (!MR_UsesEntity(rsplit,eface,MFACE)) continue; /* does not belong to region */
edir_adj = MF_EdgeDir(eface,fe);
rfdir_adj = MR_FaceDir(rsplit,eface);
/* add adjacent face based on the check that if two adjacent faces of
region are used by the region in the same sense, then their common
edge should be used by the two faces in opposite senses (or the opposite
of both the conditions should be true) */
if ((edir != edir_adj && curdir == rfdir_adj) ||
(edir == edir_adj && curdir != rfdir_adj)) {
rfarray2[nrf2] = eface;
rfdirs2[nrf2] = rfdir_adj;
List_Add(processed_faces,rfarray2[nrf2]);
nrf2++;
break;
}
}
List_Delete(efaces);
}
List_Delete(felist);
}
/* Delete the original region */
MR_Delete(rsplit,0);
/* Make the two new regions */
rnew[0] = MR_New(mesh);
MR_Set_GEntDim(rnew[0],3);
MR_Set_GEntID(rnew[0],gid);
MR_Set_Faces(rnew[0],nrf1,rfarray1,rfdirs1);
rnew[1] = MR_New(mesh);
MR_Set_GEntDim(rnew[1],3);
MR_Set_GEntID(rnew[1],gid);
MR_Set_Faces(rnew[1],nrf2,rfarray2,rfdirs2);
List_Delete(processed_faces);
return fnew;
}
int MESH_ConcatSubMesh_Face(Mesh_ptr mesh, int num, Mesh_ptr *submeshes) {
int nfv, nfe, i, j, k, ival;
MVertex_ptr mv, new_mv, sub_mv;
MEdge_ptr me, new_me, sub_me;
MFace_ptr new_mf, sub_mf;
List_ptr mfverts, mfedges;
int add_face, idx, global_id, iloc, *loc;
double coor[3], rval;
void *pval;
Mesh_ptr submesh;
List_ptr parbndry_verts = List_New(10);
List_ptr parbndry_edges = List_New(10);
MEdge_ptr *fedges = (MEdge_ptr *) malloc(MAXPV2*sizeof(MEdge_ptr));
int *fedirs = (int *) malloc(MAXPV2*sizeof(int));
MAttrib_ptr parbndryatt = MAttrib_New(mesh, "on_parbndry", INT, MVERTEX);
/* collect edges and vertices on the partition boundary */
int num_parbndry_edges = 0;
idx = 0;
while ((me = MESH_Next_Edge(mesh,&idx)))
if (ME_PType(me) != PINTERIOR) {
List_Add(parbndry_edges,me);
num_parbndry_edges++;
}
int num_parbndry_verts = 0;
idx = 0;
while ((mv = MESH_Next_Vertex(mesh,&idx)))
if (MV_PType(mv) != PINTERIOR) {
List_Add(parbndry_verts,mv);
MEnt_Set_AttVal(mv, parbndryatt, 1, 0.0, NULL);
num_parbndry_verts++;
}
/* sort based on global ID */
List_Sort(parbndry_edges,num_parbndry_edges,sizeof(MEdge_ptr),compareGlobalID);
List_Sort(parbndry_verts,num_parbndry_verts,sizeof(MVertex_ptr),compareGlobalID);
int *parbndry_vert_gids = (int *) malloc(num_parbndry_verts*sizeof(int));
int *parbndry_edge_gids = (int *) malloc(num_parbndry_edges*sizeof(int));
/* store them in array for binary search */
for (i = 0; i < num_parbndry_edges; i++) {
me = List_Entry(parbndry_edges,i);
parbndry_edge_gids[i] = ME_GlobalID(me);
}
for (i = 0; i < num_parbndry_verts; i++) {
mv = List_Entry(parbndry_verts,i);
parbndry_vert_gids[i] = MV_GlobalID(mv);
}
/* Make list of new edges and vertices which will be updated
with each mesh that is concatenated */
int max_vnew = 0, max_enew = 0;
for (i = 0; i < num; i++) {
max_vnew += MESH_Num_Vertices(submeshes[i]);
max_enew += MESH_Num_Edges(submeshes[i]);
}
int num_new_verts = 0, num_new_edges = 0;
int *new_vert_gids = (int *) malloc(max_vnew*sizeof(int));
int *new_edge_gids = (int *) malloc(max_enew*sizeof(int));
List_ptr new_verts = List_New(max_vnew);
List_ptr new_edges = List_New(max_enew);
/* Now process each mesh and add a layer of ghost elements from
each of them to the main partition */
for (i = 0; i < num; i++) {
submesh = submeshes[i];
MAttrib_ptr vidatt = MAttrib_New(submesh, "tempvid", POINTER, MVERTEX);
MAttrib_ptr eidatt = MAttrib_New(submesh, "tempeid", POINTER, MEDGE);
idx = 0;
while ((sub_mf = MESH_Next_Face(submesh, &idx))) {
add_face = 0;
/* Find matching vertices between the submesh and main mesh */
mfverts = MF_Vertices(sub_mf,1,0);
nfv = List_Num_Entries(mfverts);
for (j = 0; j < nfv; j++) {
sub_mv = List_Entry(mfverts,j);
/* Does the vertex have a known counterpart on the partition
* boundary of the main mesh? */
MEnt_Get_AttVal(sub_mv, vidatt, &ival, &rval, &mv);
if (mv) {
int on_parbndry=0;
MEnt_Get_AttVal(mv, parbndryatt, &on_parbndry, &rval, &pval);
if (on_parbndry)
add_face = 1;
} else {
/* Does the global ID of this vertex of the sub mesh face
* match the global ID of a partition boundary vertex in
* the main mesh? */
global_id = MV_GlobalID(sub_mv);
loc = (int *) bsearch(&global_id, parbndry_vert_gids, num_parbndry_verts, sizeof(int),
compareINT);
if (loc) { /* found a match */
add_face = 1;
iloc = loc - parbndry_vert_gids;
mv = List_Entry(parbndry_verts,iloc);
/* here set the ghost vertex property, only necessary when the input submeshes are not consistent */
if (MV_PType(mv) == PGHOST && MV_PType(sub_mv) != PGHOST) {
MV_Set_GEntDim(mv,MV_GEntDim(sub_mv));
MV_Set_GEntID(mv,MV_GEntID(sub_mv));
}
MEnt_Set_AttVal(sub_mv, vidatt, 0, 0.0, mv);
}
}
}
List_Delete(mfverts);
/* Find matching edges between the submesh and main mesh */
mfedges = MF_Edges(sub_mf,1,0);
nfe = List_Num_Entries(mfedges);
for (j = 0; j < nfe; j++) {
sub_me = List_Entry(mfedges,j);
/* Does the edge have a known counterpart on the partition
* boundary of the main mesh */
MEnt_Get_AttVal(sub_me, eidatt, &ival, &rval, &me);
if (!me) {
/* Does the global ID of this edge of the sub mesh face
* match the global ID of a partition boundary edge in the
* main mesh? */
global_id = ME_GlobalID(sub_me);
loc = (int *) bsearch(&global_id, parbndry_edge_gids, num_parbndry_edges, sizeof(int),
compareINT);
if (loc) {
iloc = loc - parbndry_edge_gids;
me = List_Entry(parbndry_edges,iloc);
/* here set the ghost edge property, only necessary when the input submeshes are not consistent */
if (ME_PType(me) == PGHOST && ME_PType(sub_me) != PGHOST) {
ME_Set_GEntDim(me,ME_GEntDim(sub_me));
ME_Set_GEntID(me,ME_GEntID(sub_me));
}
MEnt_Set_AttVal(sub_me, eidatt, 0, 0.0, me);
}
}
}
if (!add_face) {
List_Delete(mfedges);
continue;
}
new_mf = MF_New(mesh); /* add face */
MF_Set_GEntDim(new_mf,MF_GEntDim(sub_mf));
MF_Set_GEntID(new_mf,MF_GEntID(sub_mf));
MF_Set_PType(new_mf,PGHOST);
MF_Set_MasterParID(new_mf,MF_MasterParID(sub_mf));
MF_Set_GlobalID(new_mf,MF_GlobalID(sub_mf));
nfe = List_Num_Entries(mfedges);
for (j = 0; j < nfe; j++) {
sub_me = List_Entry(mfedges,j);
global_id = ME_GlobalID(sub_me);
fedirs[j] = MF_EdgeDir_i(sub_mf,j) == 1 ? 1 : 0;
new_me = NULL;
MEnt_Get_AttVal(sub_me, eidatt, &ival, &rval, &new_me);
if (!new_me) {
/* search in the ghost layer if another edge with
* this global ID has been added */
loc = (int *) bsearch(&global_id, new_edge_gids, num_new_edges,
sizeof(int), compareINT);
if (loc) {
iloc = loc - new_edge_gids;
new_me = List_Entry(new_edges, iloc);
MEnt_Set_AttVal(sub_me, eidatt, 0, 0.0, new_me);
}
}
if (new_me) {
if (MV_GlobalID(ME_Vertex(new_me,0)) != MV_GlobalID(ME_Vertex(sub_me,0)))
fedirs[j] = 1 - fedirs[j]; /* if the edge dir is not the same, reverse the edge dir */
} else { /* add a new edge to main mesh */
new_me = ME_New(mesh);
ME_Set_GEntDim(new_me,ME_GEntDim(sub_me));
ME_Set_GEntID(new_me,ME_GEntID(sub_me));
ME_Set_PType(new_me,PGHOST);
ME_Set_MasterParID(new_me,ME_MasterParID(sub_me));
ME_Set_GlobalID(new_me,ME_GlobalID(sub_me));
MEnt_Set_AttVal(sub_me, eidatt, 0, 0.0, new_me);
List_Add(new_edges, new_me);
for (k = 0; k < 2; k++) {
sub_mv = ME_Vertex(sub_me,k);
global_id = MV_GlobalID(sub_mv);
new_mv = NULL;
MEnt_Get_AttVal(sub_mv, vidatt, &ival, &rval, &new_mv);
if (!new_mv) {
/* search in the ghost layer if another vertex with
* this global ID has been added */
loc = (int *) bsearch(&global_id, new_vert_gids, num_new_verts,
sizeof(int), compareINT);
if (loc) {
iloc = loc - new_vert_gids;
new_mv = List_Entry(new_verts, iloc);
MEnt_Set_AttVal(sub_mv, vidatt, 0, 0.0, new_mv);
}
}
if (!new_mv) { /* add a new vertex to main mesh */
new_mv = MV_New(mesh);
MV_Set_GEntDim(new_mv,MV_GEntDim(sub_mv));
MV_Set_GEntID(new_mv,MV_GEntID(sub_mv));
MV_Set_PType(new_mv,PGHOST);
MV_Set_MasterParID(new_mv,MV_MasterParID(sub_mv));
MV_Set_GlobalID(new_mv,MV_GlobalID(sub_mv));
MV_Coords(sub_mv,coor);
MV_Set_Coords(new_mv,coor);
MEnt_Set_AttVal(sub_mv, vidatt, 0, 0.0, new_mv);
List_Add(new_verts, new_mv);
}
ME_Set_Vertex(new_me,k,new_mv); /* set edge-vertex */
}
}
fedges[j] = new_me;
}
MF_Set_Edges(new_mf,nfe,fedges,fedirs); /* set face-edge */
List_Delete(mfedges);
}
idx = 0;
while ((sub_mv = MESH_Next_Vertex(submesh, &idx)))
MEnt_Rem_AttVal(sub_mv, vidatt);
MAttrib_Delete(vidatt);
idx = 0;
while ((sub_me = MESH_Next_Edge(submesh, &idx)))
MEnt_Rem_AttVal(sub_me, eidatt);
MAttrib_Delete(eidatt);
/* Sort the added entity lists by GlobalID */
num_new_edges = List_Num_Entries(new_edges);
List_Sort(new_edges, num_new_edges, sizeof(MEdge_ptr), compareGlobalID);
for (j = 0; j < num_new_edges; j++)
new_edge_gids[j] = ME_GlobalID(List_Entry(new_edges, j));
num_new_verts = List_Num_Entries(new_verts);
List_Sort(new_verts, num_new_verts, sizeof(MVertex_ptr), compareGlobalID);
for (j = 0; j < num_new_verts; j++)
new_vert_gids[j] = MV_GlobalID(List_Entry(new_verts, j));
}
idx = 0;
while ((mv = List_Next_Entry(parbndry_verts, &idx)))
MEnt_Rem_AttVal(mv, parbndryatt);
MAttrib_Delete(parbndryatt);
List_Delete(parbndry_edges);
List_Delete(parbndry_verts);
List_Delete(new_edges);
List_Delete(new_verts);
free(parbndry_vert_gids);
free(parbndry_edge_gids);
free(new_vert_gids);
free(new_edge_gids);
free(fedges);
free(fedirs);
return 1;
}
List_ptr MF_Edges_R4(MFace_ptr f, int dir, MVertex_ptr v0) {
MFace_Adj_R4 *adj = (MFace_Adj_R4 *) f->adj;
int i, j, k, ne, nv;
List_ptr fedges;
MVertex_ptr v, evtx[2], vtmp;
MEdge_ptr e;
k = 0;
if (v0) {
int fnd = 0, idx = 0;
while (!fnd && (v = List_Next_Entry(adj->fvertices,&idx))) {
if (v == v0)
fnd = 1;
else
k++;
}
if (!fnd) {
MSTK_Report("MF_Edges_R4","Cannot find vertex in face",MSTK_ERROR);
return NULL;
}
}
nv = ne = List_Num_Entries(adj->fvertices);
fedges = List_New(ne);
for (i = 0; i < ne; i++) {
j = dir ? (k+i)%ne : (k-i+ne)%ne;
evtx[0] = List_Entry(adj->fvertices,j);
j = dir ? (k+(i+1))%ne : (k-(i+1)+ne)%ne;
evtx[1] = List_Entry(adj->fvertices,j);
#ifdef HASHTABLE
if (evtx[0]>evtx[1]) {
vtmp = evtx[0];
evtx[0] = evtx[1];
evtx[1] = vtmp;
}
e = Hash_Entry(MESH_Hash_Edges(MEnt_Mesh((MEntity_ptr) f)), 2, evtx);
if (e == NULL) {
e = ME_New(MEnt_Mesh((MEntity_ptr) f));
MEnt_Set_Volatile(e);
ME_Set_Vertex(e,0,evtx[0]);
ME_Set_Vertex(e,1,evtx[1]);
ME_Set_GInfo_Auto(e);
Hash_Add(MESH_Hash_Edges(MEnt_Mesh((MEntity_ptr) f)), e, 2, evtx);
}
#else
e = ME_New(MEnt_Mesh((MEntity_ptr)f));
MEnt_Set_Volatile(e);
ME_Set_Vertex(e,0,evtx[0]);
ME_Set_Vertex(e,1,evtx[1]);
ME_Set_GInfo_Auto(e);
#endif
List_Add(fedges,e);
ME_Lock(e);
}
if (!MESH_AutoLock(MEnt_Mesh((MEntity_ptr) f))) {
i = 0;
while ((e = List_Next_Entry(fedges, &i))) {
ME_UnLock(e);
}
}
return fedges;
}
void MESH_Renumber(Mesh_ptr mesh, int renum_type, MType mtype) {
MVertex_ptr mv, v0=NULL;
MEdge_ptr me, e0=NULL;
MFace_ptr mf, f0=NULL;
MRegion_ptr mr, r0=NULL;
int idx, idx2, idx3;
int i, j;
int done;
MAttrib_ptr vidatt;
List_ptr vlist;
double xyz[3];
double rval;
int bandwidth, maxbandwidth1, maxbandwidth2;
double avebandwidth1, avebandwidth2;
void *pval;
if (renum_type == 0) {
if (mtype == MVERTEX || mtype == MALLTYPE) {
int nv = 0;
idx = 0;
while ((mv = MESH_Next_Vertex(mesh,&idx)))
MV_Set_ID(mv,++nv);
}
if (mtype == MEDGE || mtype == MALLTYPE) {
int ne = 0;
idx = 0;
while ((me = MESH_Next_Edge(mesh,&idx)))
ME_Set_ID(me,++ne);
}
if (mtype == MFACE || mtype == MALLTYPE) {
int nf = 0;
idx = 0;
while ((mf = MESH_Next_Face(mesh,&idx)))
MF_Set_ID(mf,++nf);
}
if (mtype == MREGION || mtype == MALLTYPE) {
int nr = 0;
idx = 0;
while ((mr = MESH_Next_Region(mesh,&idx)))
MR_Set_ID(mr,++nr);
}
}
else if (renum_type == 1) {
double minx, miny, minz;
int minid, maxid;
int *nadj, *newmap, *adj, *offset, nconn;
int nalloc, depth, maxwidth;
#ifdef MSTK_USE_MARKERS
int mkid = MSTK_GetMarker();
#else
MAttrib_ptr mkatt = MAttrib_New(mesh, "mkatt", INT, MALLTYPE);
#endif
if (mtype == MVERTEX || mtype == MALLTYPE) {
int nv = MESH_Num_Vertices(mesh);
/* Compute a graph of vertex connections across elements (faces
for surface meshes, regions for solid meshes */
/* Start with the vertex in the lower leftmost corner */
minx = miny = minz = 1.0e+12;
v0 = NULL;
idx = 0;
while ((mv = MESH_Next_Vertex(mesh,&idx))) {
MV_Coords(mv,xyz);
if (xyz[0] <= minx && xyz[1] <= miny && xyz[2] <= minz) {
minx = xyz[0];
miny = xyz[1];
minz = xyz[2];
v0 = mv;
}
}
nadj = (int *) malloc(nv*sizeof(int));
nalloc = nv*5;
adj = (int *) malloc(nalloc*sizeof(int));
if (!MESH_Num_Regions(mesh)) {
int nentries = 0;
i = 0;
idx = 0;
while ((mv = MESH_Next_Vertex(mesh,&idx))) {
List_ptr vfaces, adjvlist;
MFace_ptr vf;
MVertex_ptr adjv;
adjvlist = List_New(0);
vfaces = MV_Faces(mv);
idx2 = 0;
while ((vf = List_Next_Entry(vfaces,&idx2))) {
List_ptr fverts = MF_Vertices(vf,1,0);
idx3 = 0;
while ((adjv = List_Next_Entry(fverts,&idx3))) {
if (adjv != mv) {
int vmarked;
#ifdef MSTK_USE_MARKERS
vmarked = MEnt_IsMarked(adjv,mkid);
#else
MEnt_Get_AttVal(adjv, mkatt, &vmarked, &rval, &pval);
#endif
if (!vmarked) {
List_Add(adjvlist,adjv);
#ifdef MSTK_USE_MARKERS
MEnt_Mark(adjv,mkid);
#else
MEnt_Set_AttVal(adjv, mkatt, 1, 0.0, NULL);
#endif
}
}
}
List_Delete(fverts);
}
List_Delete(vfaces);
#ifdef MSTK_USE_MARKERS
List_Unmark(adjvlist,mkid);
#endif
nadj[i] = List_Num_Entries(adjvlist);
if (nentries+nadj[i] > nalloc) {
nalloc *= 2;
adj = (int *) realloc(adj,nalloc*sizeof(int));
}
idx2 = 0;
while ((adjv = List_Next_Entry(adjvlist,&idx2)))
adj[nentries++] = MV_ID(adjv)-1;
List_Delete(adjvlist);
i++;
}
}
else {
int nentries = 0;
i = 0;
idx = 0;
while ((mv = MESH_Next_Vertex(mesh,&idx))) {
List_ptr vregions, adjvlist;
MRegion_ptr vr;
MVertex_ptr adjv;
adjvlist = List_New(0);
vregions = MV_Regions(mv);
idx2 = 0;
while ((vr = List_Next_Entry(vregions,&idx2))) {
List_ptr rverts = MR_Vertices(vr);
idx3 = 0;
while ((adjv = List_Next_Entry(rverts,&idx3))) {
if (adjv != mv) {
int vmarked;
#ifdef MSTK_USE_MARKERS
vmarked = MEnt_IsMarked(adjv,mkid);
#else
MEnt_Get_AttVal(adjv, mkatt, &vmarked, &rval, &pval);
#endif
if (!vmarked) {
List_Add(adjvlist,adjv);
#ifdef MSTK_USE_MARKERS
MEnt_Mark(adjv,mkid);
#else
MEnt_Set_AttVal(adjv, mkatt, 1, 0.0, NULL);
#endif
}
}
}
List_Delete(rverts);
}
List_Delete(vregions);
#ifdef MSTK_USE_MARKERS
List_Unmark(adjvlist,mkid);
#endif
nadj[i] = List_Num_Entries(adjvlist);
if (nentries+nadj[i] > nalloc) {
nalloc *= 2;
adj = (int *) realloc(adj,nalloc*sizeof(int));
}
idx2 = 0;
while ((adjv = List_Next_Entry(adjvlist,&idx2)))
adj[nentries++] = MV_ID(adjv)-1;
List_Delete(adjvlist);
i++;
}
}
/* Compute offsets into adj array */
offset = (int *) malloc(nv*sizeof(int));
offset[0] = 0;
for (i = 1; i < nv; i++)
offset[i] = offset[i-1] + nadj[i-1];
/* Compute maximum bandwidth before renumbering */
maxbandwidth1 = 0;
avebandwidth1 = 0;
for (i = 0; i < nv; i++) {
int off = offset[i];
int curid = i;
for (j = 0; j < nadj[i]; j++) {
int adjid = adj[off+j];
int diff = abs(adjid-curid);
maxbandwidth1 = (diff > maxbandwidth1) ? diff : maxbandwidth1;
avebandwidth1 += diff;
nconn++;
}
}
nconn = offset[nv-1]+nadj[nv-1];
avebandwidth1 /= nconn;
fprintf(stderr,
"Ave vertex ID difference on elements before renumbering: %-lf\n",
avebandwidth1);
fprintf(stderr,
"Max vertex ID difference on elements before renumbering: %-d\n",
maxbandwidth1);
fprintf(stderr,"\n");
newmap = (int *) malloc(nv*sizeof(int));
Graph_Renumber_GPS(nv, MV_ID(v0)-1, nadj, adj, newmap, &depth, &maxwidth);
/* Compute bandwidth after renumbering */
maxbandwidth2 = 0;
avebandwidth2 = 0;
for (i = 0; i < nv; i++) {
int off = offset[i];
int curid = newmap[i];
for (j = 0; j < nadj[i]; j++) {
int adjid = newmap[adj[off+j]];
int diff = abs(adjid-curid);
maxbandwidth2 = (diff > maxbandwidth2) ? diff : maxbandwidth2;
avebandwidth2 += diff;
nconn++;
}
}
nconn = offset[nv-1]+nadj[nv-1];
avebandwidth2 /= nconn;
if (maxbandwidth2 < maxbandwidth1 && avebandwidth2 < avebandwidth1) {
/* Renumber */
idx = 0; i = 0;
while ((mv = MESH_Next_Vertex(mesh,&idx))) {
MV_Set_ID(mv,newmap[i]+1);
i++;
}
fprintf(stderr,
"Ave vertex ID difference on elements after renumbering: %-lf\n",
avebandwidth2);
fprintf(stderr,
"Max vertex ID difference on elements after renumbering: %-d\n",
maxbandwidth2);
}
else {
nv = 0;
idx = 0;
while ((mv = MESH_Next_Vertex(mesh,&idx)))
MV_Set_ID(mv,++nv);
fprintf(stderr,"Bandwidth did not improve. Keeping old numbering with gaps eliminated\n");
}
fprintf(stderr,"\n\n\n");
free(nadj);
free(adj);
free(offset);
free(newmap);
}
/* Reorder edges according to a breadth first algorithm applied to
edges (differs from RCM in that it does not add adjacent nodes
in ascending order of their valence) */
if (mtype == MEDGE || mtype == MALLTYPE) {
int ne = MESH_Num_Edges(mesh);
MEdge_ptr ve;
List_ptr elist;
/************************* renumbering code ****************************/
ne = MESH_Num_Edges(mesh);
if (mtype == MALLTYPE) {
/* RCM algorithm already applied on the vertices. Use an edge
connected to the starting vertex as the first edge */
List_ptr vedges = MV_Edges(v0);
e0 = List_Entry(vedges,0);
List_Delete(vedges);
}
else {
/* Find the edge whose mid point is a minimum point */
minx = miny = minz = 1.0e+12;
e0 = NULL;
idx = 0;
while ((me = MESH_Next_Edge(mesh,&idx))) {
double exyz[2][3];
MV_Coords(ME_Vertex(me,0),exyz[0]);
MV_Coords(ME_Vertex(me,1),exyz[1]);
xyz[0] = (exyz[0][0]+exyz[1][0])/2.0;
xyz[1] = (exyz[0][1]+exyz[1][1])/2.0;
xyz[2] = (exyz[0][2]+exyz[1][2])/2.0;
if (xyz[0] < minx && xyz[1] < miny && xyz[2] < minz) {
minx = xyz[0];
miny = xyz[1];
minz = xyz[2];
e0 = me;
}
}
}
nadj = (int *) malloc(ne*sizeof(int));
nalloc = ne*5;
adj = (int *) malloc(nalloc*sizeof(int));
if (!MESH_Num_Regions(mesh)) {
int nentries = 0;
i = 0;
idx = 0;
while ((me = MESH_Next_Edge(mesh,&idx))) {
List_ptr efaces, adjelist;
MFace_ptr ef;
MEdge_ptr adje;
adjelist = List_New(0);
efaces = ME_Faces(me);
idx2 = 0;
while ((ef = List_Next_Entry(efaces,&idx2))) {
List_ptr fedges = MF_Edges(ef,1,0);
idx3 = 0;
while ((adje = List_Next_Entry(fedges,&idx3))) {
if (adje != me) {
int emarked;
#ifdef MSTK_USE_MARKERS
emarked = MEnt_IsMarked(adje,mkid);
#else
MEnt_Get_AttVal(adje, mkatt, &emarked, &rval, &pval);
#endif
if (!emarked) {
List_Add(adjelist,adje);
#ifdef MSTK_USE_MARKERS
MEnt_Mark(adje,mkid);
#else
MEnt_Set_AttVal(adje, mkatt, 1, 0.0, NULL);
#endif
}
}
}
List_Delete(fedges);
}
List_Delete(efaces);
#ifdef MSTK_USE_MARKERS
List_Unmark(adjelist,mkid);
#endif
nadj[i] = List_Num_Entries(adjelist);
if (nentries+nadj[i] > nalloc) {
nalloc *= 2;
adj = (int *) realloc(adj,nalloc*sizeof(int));
}
idx2 = 0;
while ((adje = List_Next_Entry(adjelist,&idx2)))
adj[nentries++] = ME_ID(adje)-1;
List_Delete(adjelist);
i++;
}
}
else {
int nentries = 0;
i = 0;
idx = 0;
while ((me = MESH_Next_Edge(mesh,&idx))) {
List_ptr eregions, adjelist;
MRegion_ptr er;
MEdge_ptr adje;
adjelist = List_New(0);
eregions = ME_Regions(me);
idx2 = 0;
while ((er = List_Next_Entry(eregions,&idx2))) {
List_ptr redges = MR_Edges(er);
idx3 = 0;
while ((adje = List_Next_Entry(redges,&idx3))) {
if (adje != me) {
int emarked;
#ifdef MSTK_USE_MARKERS
emarked = MEnt_IsMarked(adje,mkid);
#else
MEnt_Get_AttVal(adje, mkatt, &emarked, &rval, &pval);
#endif
if (!emarked) {
List_Add(adjelist,adje);
#ifdef MSTK_USE_MARKERS
MEnt_Mark(adje,mkid);
#else
MEnt_Set_AttVal(adje, mkatt, 1, 0.0, NULL);
#endif
}
}
}
List_Delete(redges);
}
List_Delete(eregions);
#ifdef MSTK_USE_MARKERS
List_Unmark(adjelist,mkid);
#endif
nadj[i] = List_Num_Entries(adjelist);
if (nentries+nadj[i] > nalloc) {
nalloc *= 2;
adj = (int *) realloc(adj,nalloc*sizeof(int));
}
idx2 = 0;
while ((adje = List_Next_Entry(adjelist,&idx2)))
adj[nentries++] = ME_ID(adje)-1;
List_Delete(adjelist);
i++;
}
}
/* Compute offsets into adj array */
offset = (int *) malloc(ne*sizeof(int));
offset[0] = 0;
for (i = 1; i < ne; i++)
offset[i] = offset[i-1] + nadj[i-1];
/* Compute maximum bandwidth before renumbering */
maxbandwidth1 = 0;
avebandwidth1 = 0;
for (i = 0; i < ne; i++) {
int off = offset[i];
int curid = i;
for (j = 0; j < nadj[i]; j++) {
int adjid = adj[off+j];
int diff = abs(adjid-curid);
maxbandwidth1 = (diff > maxbandwidth1) ? diff : maxbandwidth1;
avebandwidth1 += diff;
nconn++;
}
}
nconn = offset[ne-1]+nadj[ne-1];
avebandwidth1 /= nconn;
fprintf(stderr,
"Ave edge ID difference on elements before renumbering: %-lf\n",
avebandwidth1);
fprintf(stderr,
"Max edge ID difference on elements before renumbering: %-d\n",
maxbandwidth1);
fprintf(stderr,"\n");
/* Call Graph Renumbering algorithm */
newmap = (int *) malloc(ne*sizeof(int));
Graph_Renumber_GPS(ne, ME_ID(e0)-1, nadj, adj, newmap, &depth, &maxwidth);
/* Compute bandwidth after renumbering */
maxbandwidth2 = 0;
avebandwidth2 = 0;
for (i = 0; i < ne; i++) {
int off = offset[i];
int curid = newmap[i];
for (j = 0; j < nadj[i]; j++) {
int adjid = newmap[adj[off+j]];
int diff = abs(adjid-curid);
maxbandwidth2 = (diff > maxbandwidth2) ? diff : maxbandwidth2;
avebandwidth2 += diff;
nconn++;
}
}
nconn = offset[ne-1]+nadj[ne-1];
avebandwidth2 /= nconn;
if (maxbandwidth2 < maxbandwidth1 && avebandwidth2 < avebandwidth1) {
/* Renumber */
idx = 0; i = 0;
while ((me = MESH_Next_Edge(mesh,&idx))) {
ME_Set_ID(me,newmap[i]+1);
i++;
}
fprintf(stderr,
"Ave edge ID difference on elements after renumbering: %-lf\n",
avebandwidth2);
fprintf(stderr,
"Max edge ID difference on elements after renumbering: %-d\n",
maxbandwidth2);
}
else {
ne = 0;
idx = 0;
while ((me = MESH_Next_Edge(mesh,&idx)))
ME_Set_ID(me,++ne);
fprintf(stderr,"Bandwidth did not improve. Keeping old numbering with gaps eliminated\n");
}
fprintf(stderr,"\n\n\n");
free(nadj);
free(adj);
free(offset);
free(newmap);
}
/* Reorder faces according to a breadth first algorithm applied to
edges (differs from RCM in that it does not add adjacent graph nodes
in ascending order of their valence) */
if (mtype == MFACE || mtype == MALLTYPE) {
int nf = MESH_Num_Faces(mesh);
if (mtype == MALLTYPE) {
/* RCM algorithm already applied on the vertices. Use an edge
connected to the starting vertex as the first edge */
List_ptr vfaces = MV_Faces(v0);
f0 = List_Entry(vfaces,0);
List_Delete(vfaces);
}
else {
/* Find the face whose mid point is a minimum point */
minx = miny = minz = 1.0e+12;
f0 = NULL;
idx = 0;
while ((mf = MESH_Next_Face(mesh,&idx))) {
double fxyz[MAXPV2][3];
int nfv;
MF_Coords(mf,&nfv,fxyz);
xyz[0] = fxyz[0][0];
xyz[1] = fxyz[0][1];
xyz[2] = fxyz[0][2];
for (i = 1; i < nfv; i++) {
xyz[0] += fxyz[i][0];
xyz[1] += fxyz[i][1];
xyz[2] += fxyz[i][2];
}
xyz[0] /= nfv; xyz[1] /= nfv; xyz[2] /= nfv;
if (xyz[0] < minx && xyz[1] < miny && xyz[2] < minz) {
minx = xyz[0];
miny = xyz[1];
minz = xyz[2];
f0 = mf;
}
}
}
nadj = (int *) malloc(nf*sizeof(int));
nalloc = nf*5;
adj = (int *) malloc(nalloc*sizeof(int));
if (!MESH_Num_Regions(mesh)) {
int nentries = 0;
i = 0;
idx = 0;
while ((mf = MESH_Next_Face(mesh,&idx))) {
List_ptr vfaces, fverts, adjflist;
MFace_ptr vf, adjf;
MVertex_ptr fv;
adjflist = List_New(0);
fverts = MF_Vertices(mf,1,0);
idx2 = 0;
while ((fv = List_Next_Entry(fverts,&idx2))) {
List_ptr vfaces = MV_Faces(fv);
idx3 = 0;
while ((adjf = List_Next_Entry(vfaces,&idx3))) {
if (adjf != mf) {
int fmarked;
#ifdef MSTK_USE_MARKERS
fmarked = MEnt_IsMarked(adjf,mkid);
#else
MEnt_Get_AttVal(adjf, mkatt, &fmarked, &rval, &pval);
#endif
if (fmarked) {
List_Add(adjflist,adjf);
#ifdef MSTK_USE_MARKERS
MEnt_Mark(adjf,mkid);
#else
MEnt_Set_AttVal(adjf, mkatt, 1, 0.0, NULL);
#endif
}
}
}
List_Delete(vfaces);
}
List_Delete(fverts);
#ifdef MSTK_USE_MARKERS
List_Unmark(adjflist,mkid);
#endif
nadj[i] = List_Num_Entries(adjflist);
if (nentries+nadj[i] > nalloc) {
nalloc *= 2;
adj = (int *) realloc(adj,nalloc*sizeof(int));
}
idx2 = 0;
while ((adjf = List_Next_Entry(adjflist,&idx2)))
adj[nentries++] = MF_ID(adjf)-1;
List_Delete(adjflist);
i++;
}
}
else {
int nentries = 0;
i = 0;
idx = 0;
while ((mf = MESH_Next_Face(mesh,&idx))) {
List_ptr fregions, adjflist;
MRegion_ptr fr;
MFace_ptr adjf;
adjflist = List_New(0);
fregions = MF_Regions(mf);
idx2 = 0;
while ((fr = List_Next_Entry(fregions,&idx2))) {
List_ptr rfaces = MR_Faces(fr);
idx3 = 0;
while ((adjf = List_Next_Entry(rfaces,&idx3))) {
if (adjf != mf) {
int fmarked;
#ifdef MSTK_USE_MARKERS
fmarked = MEnt_IsMarked(adjf,mkid);
#else
MEnt_Get_AttVal(adjf, mkatt, &fmarked, &rval, &pval);
#endif
if (fmarked) {
List_Add(adjflist,adjf);
#ifdef MSTK_USE_MARKERS
MEnt_Mark(adjf,mkid);
#else
MEnt_Set_AttVal(adjf, mkatt, 1, 0.0, NULL);
#endif
}
}
}
List_Delete(rfaces);
}
List_Delete(fregions);
#ifdef MSTK_USE_MARKERS
List_Unmark(adjflist,mkid);
#endif
nadj[i] = List_Num_Entries(adjflist);
if (nentries+nadj[i] > nalloc) {
nalloc *= 2;
adj = (int *) realloc(adj,nalloc*sizeof(int));
}
idx2 = 0;
while ((adjf = List_Next_Entry(adjflist,&idx2)))
adj[nentries++] = MF_ID(adjf)-1;
List_Delete(adjflist);
i++;
}
}
/* Compute offsets into adj array */
offset = (int *) malloc(nf*sizeof(int));
offset[0] = 0;
for (i = 1; i < nf; i++)
offset[i] = offset[i-1] + nadj[i-1];
/* Compute maximum bandwidth before renumbering */
maxbandwidth1 = 0;
avebandwidth1 = 0;
for (i = 0; i < nf; i++) {
int off = offset[i];
int curid = i;
for (j = 0; j < nadj[i]; j++) {
int adjid = adj[off+j];
int diff = abs(adjid-curid);
maxbandwidth1 = (diff > maxbandwidth1) ? diff : maxbandwidth1;
avebandwidth1 += diff;
nconn++;
}
}
nconn = offset[nf-1]+nadj[nf-1];
avebandwidth1 /= nconn;
if (MESH_Num_Regions(mesh)) {
fprintf(stderr,
"Ave face ID difference on elements before renumbering: %-lf\n",
avebandwidth1);
fprintf(stderr,
"Max face ID difference on elements before renumbering: %-d\n",
maxbandwidth1);
}
else {
fprintf(stderr,
"Ave face ID difference before renumbering: %-lf\n",
avebandwidth1);
fprintf(stderr,
"Max face ID difference before renumbering: %-d\n",
maxbandwidth1);
}
fprintf(stderr,"\n");
/* Call Graph Renumbering algorithm */
newmap = (int *) malloc(nf*sizeof(int));
Graph_Renumber_GPS(nf, MF_ID(f0)-1, nadj, adj, newmap, &depth, &maxwidth);
/* Compute bandwidth after renumbering */
maxbandwidth2 = 0;
avebandwidth2 = 0;
for (i = 0; i < nf; i++) {
int off = offset[i];
int curid = newmap[i];
for (j = 0; j < nadj[i]; j++) {
int adjid = newmap[adj[off+j]];
int diff = abs(adjid-curid);
maxbandwidth2 = (diff > maxbandwidth2) ? diff : maxbandwidth2;
avebandwidth2 += diff;
nconn++;
}
}
nconn = offset[nf-1]+nadj[nf-1];
avebandwidth2 /= nconn;
if (maxbandwidth2 < maxbandwidth1 && avebandwidth2 < avebandwidth1) {
/* Renumber */
idx = 0; i = 0;
while ((mf = MESH_Next_Face(mesh,&idx))) {
MF_Set_ID(mf,newmap[i]+1);
i++;
}
if (MESH_Num_Regions(mesh)) {
fprintf(stderr,
"Ave face ID difference on elements after renumbering: %-lf\n",
avebandwidth2);
fprintf(stderr,
"Max face ID difference on elements after renumbering: %-d\n",
maxbandwidth2);
}
else {
fprintf(stderr,
"Ave face ID difference after renumbering: %-lf\n",
avebandwidth2);
fprintf(stderr,
"Max face ID difference after renumbering: %-d\n",
maxbandwidth2);
}
}
else {
nf = 0;
idx = 0;
while ((mf = MESH_Next_Face(mesh,&idx)))
MF_Set_ID(mf,++nf);
fprintf(stderr,"Bandwidth did not improve. Keeping old numbering with gaps eliminated\n");
}
fprintf(stderr,"\n\n\n");
free(nadj);
free(adj);
free(offset);
free(newmap);
}
if (mtype == MREGION || mtype == MALLTYPE) {
int nr = MESH_Num_Regions(mesh);
if (nr) {
if (mtype == MALLTYPE) {
/* Renumbering algorithm already applied on the vertices. Use
a region connected to the starting vertex as the first
region */
List_ptr vregions = MV_Regions(v0);
r0 = List_Entry(vregions,0);
List_Delete(vregions);
}
else {
/* Find the region whose center point is a minimum point */
minx = miny = minz = 1.0e+12;
r0 = NULL;
idx = 0;
while ((mr = MESH_Next_Region(mesh,&idx))) {
double rxyz[MAXPV3][3];
int nrv;
MR_Coords(mr,&nrv,rxyz);
xyz[0] = rxyz[0][0];
xyz[1] = rxyz[0][1];
xyz[2] = rxyz[0][2];
for (i = 1; i < nrv; i++) {
xyz[0] += rxyz[i][0];
xyz[1] += rxyz[i][1];
xyz[2] += rxyz[i][2];
}
xyz[0] /= nrv; xyz[1] /= nrv; xyz[2] /= nrv;
if (xyz[0] < minx && xyz[1] < miny && xyz[2] < minz) {
minx = xyz[0];
miny = xyz[1];
minz = xyz[2];
r0 = mr;
}
}
}
nadj = (int *) malloc(nr*sizeof(int));
nalloc = nr*5;
adj = (int *) malloc(nalloc*sizeof(int));
int nentries = 0;
i = 0;
idx = 0;
while ((mr = MESH_Next_Region(mesh,&idx))) {
List_ptr vregions, rverts, adjrlist;
MRegion_ptr vr, adjr;
MVertex_ptr rv;
adjrlist = List_New(0);
rverts = MR_Vertices(mr);
idx2 = 0;
while ((rv = List_Next_Entry(rverts,&idx2))) {
List_ptr vregions = MV_Regions(rv);
idx3 = 0;
while ((adjr = List_Next_Entry(vregions,&idx3))) {
if (adjr != mr) {
int rmarked;
#ifdef MSTK_USE_MARKERS
rmarked = MEnt_IsMarked(adjr,mkid);
#else
MEnt_Get_AttVal(adjr, mkatt, &rmarked, &rval, &pval);
#endif
List_Add(adjrlist,adjr);
#ifdef MSTK_USE_MARKERS
MEnt_Mark(adjr,mkid);
#else
MEnt_Set_AttVal(adjr, mkatt, 1, 0.0, NULL);
#endif
}
}
List_Delete(vregions);
}
List_Delete(rverts);
#ifdef MSTK_USE_MARKERS
List_Unmark(adjrlist,mkid);
#endif
nadj[i] = List_Num_Entries(adjrlist);
if (nentries+nadj[i] > nalloc) {
nalloc *= 2;
adj = (int *) realloc(adj,nalloc*sizeof(int));
}
idx2 = 0;
while ((adjr = List_Next_Entry(adjrlist,&idx2)))
adj[nentries++] = MR_ID(adjr)-1;
List_Delete(adjrlist);
i++;
}
/* Compute offsets into adj array */
offset = (int *) malloc(nr*sizeof(int));
offset[0] = 0;
for (i = 1; i < nr; i++)
offset[i] = offset[i-1] + nadj[i-1];
/* Compute maximum bandwidth before renumbering */
maxbandwidth1 = 0;
avebandwidth1 = 0;
for (i = 0; i < nr; i++) {
int off = offset[i];
int curid = i;
for (j = 0; j < nadj[i]; j++) {
int adjid = adj[off+j];
int diff = abs(adjid-curid);
maxbandwidth1 = (diff > maxbandwidth1) ? diff : maxbandwidth1;
avebandwidth1 += diff;
nconn++;
}
}
nconn = offset[nr-1]+nadj[nr-1];
avebandwidth1 /= nconn;
fprintf(stderr,
"Ave region ID difference before renumbering: %-lf\n",
avebandwidth1);
fprintf(stderr,
"Max region ID difference before renumbering: %-d\n",
maxbandwidth1);
fprintf(stderr,"\n");
/* Call Graph Renumbering algorithm */
newmap = (int *) malloc(nr*sizeof(int));
Graph_Renumber_GPS(nr, MR_ID(r0)-1, nadj, adj, newmap, &depth, &maxwidth);
/* Compute bandwidth after renumbering */
maxbandwidth2 = 0;
avebandwidth2 = 0;
for (i = 0; i < nr; i++) {
int off = offset[i];
int curid = newmap[i];
for (j = 0; j < nadj[i]; j++) {
int adjid = newmap[adj[off+j]];
int diff = abs(adjid-curid);
maxbandwidth2 = (diff > maxbandwidth2) ? diff : maxbandwidth2;
avebandwidth2 += diff;
nconn++;
}
}
nconn = offset[nr-1]+nadj[nr-1];
avebandwidth2 /= nconn;
if (maxbandwidth2 < maxbandwidth1 && avebandwidth2 < avebandwidth1) {
/* Renumber */
idx = 0; i = 0;
while ((mr = MESH_Next_Region(mesh,&idx))) {
MR_Set_ID(mr,newmap[i]+1);
i++;
}
fprintf(stderr,
"Ave region ID difference after renumbering: %-lf\n",
avebandwidth2);
fprintf(stderr,
"Max region ID difference after renumbering: %-d\n",
maxbandwidth2);
}
else {
nr = 0;
idx = 0;
while ((mr = MESH_Next_Region(mesh,&idx)))
MR_Set_ID(mr,++nr);
fprintf(stderr,"Bandwidth did not improve. Keeping old numbering with gaps eliminated\n");
}
fprintf(stderr,"\n\n\n");
free(nadj);
free(adj);
free(offset);
free(newmap);
}
}
#ifdef MSTK_USE_MARKERS
MSTK_FreeMarker(mkid);
#endif
}
vidatt = MAttrib_New(mesh,"vidrcm",INT,MVERTEX);
idx = 0;
while ((mv = MESH_Next_Vertex(mesh,&idx))) {
MEnt_Set_AttVal(mv,vidatt,MV_ID(mv),0.0,NULL);
}
/* We have to reset the max IDs stored in the mesh so that we can correctly
assign IDs to new entities */
MESH_Reset_Cached_MaxIDs(mesh);
return;
}
void AppendMenuItemClassic(HPOPUP popup, HMENUITEM item)
{
List_Add(popup->menu_items, item);
}
void Stack_Push(Stack* stack, void* item)
{
List_Add(stack, item);
};
int MESH_BuildEdgeClassfn(Mesh_ptr mesh, int use_geometry) {
int i, j, k, idx, idx2, fnd, fnd2, geid, geid2, gdim;
int ngedges, ngealloc, ngef, max_loc_gfids, *loc_gfids;
int max_gedge_id;
int nve, nbe, nef, nsub, *geids, **gefaceids;
double PI=3.141592, cosang, COSSHARPANG;
MVertex_ptr ev[2];
MEdge_ptr edge, subedge, adjedge;
MFace_ptr eface;
List_ptr efaces, vedges, vbedges, geedges, subedges;
double rval;
void *pval;
COSSHARPANG = cos(5*PI/6); /* 165 degrees */
/* Verify that mesh edges on the boundary have classification
information; if not, assign all edges to the same model edge */
ngedges = 0; ngealloc = 10;
geids = (int *) malloc(ngealloc*sizeof(int)); /* model edge ids */
/* Number of model faces connected to edge followed by model face ids */
gefaceids = (int **) malloc(ngealloc*sizeof(int *));
/* Take stock of existing model edge information */
max_gedge_id = 0;
idx = 0;
while ((edge = MESH_Next_Edge(mesh,&idx))) {
gdim = ME_GEntDim(edge);
if (gdim != 1)
continue;
geid = ME_GEntID(edge);
if (geid) {
/* Has this model edge been encountered? If not, add it to list
of model edges */
for (i = 0, fnd = 0; i < ngedges; i++)
if (geids[i] == geid) {
fnd = 1;
break;
}
if (!fnd) {
if (geid > max_gedge_id)
max_gedge_id = geid;
if (ngealloc == ngedges) {
ngealloc *= 2;
geids = (int *) realloc(geids,ngealloc*sizeof(int));
gefaceids = (int **)realloc(gefaceids,ngealloc*sizeof(int *));
}
geids[ngedges] = geid;
efaces = ME_Faces(edge);
nef = List_Num_Entries(efaces);
gefaceids[ngedges] = (int *) malloc((1+nef)*sizeof(int));
ngef = 0;
for (i = 0; i < nef; i++) {
eface = List_Entry(efaces,i);
if (MF_GEntDim(eface) == 2) {
gefaceids[ngedges][1+ngef] = MF_GEntID(eface);
ngef++;
}
}
gefaceids[ngedges][0] = ngef;
ngedges++;
List_Delete(efaces);
}
}
}
/* Build new model edge information based on adjacent model region info */
/* NOTE: The following cases involve some repetition and can be
"cleverly" folded into a shorter piece of code, but then the
method by which the individual cases are handled gets a littled
obscured. So leave as is */
max_loc_gfids = 10;
loc_gfids = (int *) malloc(max_loc_gfids*sizeof(int));
idx = 0;
while ((edge = MESH_Next_Edge(mesh,&idx))) {
gdim = ME_GEntDim(edge);
geid = ME_GEntID(edge);
/* Edge has no classification? Assign classification info */
/* Edge classified as face or interior edge? Verify */
efaces = ME_Faces(edge);
nef = efaces ? List_Num_Entries(efaces) : 0;
if (!nef) {
/* Isolated edge (must be on model edge). Did we encounter such
an edge before? */
ME_Set_GEntDim(edge,1);
for (i = 0, fnd = 0; i < ngedges; i++) {
if (gefaceids[i][0] == 0) {
fnd = 1;
break;
}
}
if (fnd)
ME_Set_GEntID(edge,geids[i]);
else {
max_gedge_id++;
ME_Set_GEntID(edge,max_gedge_id);
if (ngealloc == ngedges) {
ngealloc *= 2;
geids = (int *) realloc(geids,ngealloc*sizeof(int));
gefaceids = (int **) realloc(gefaceids,ngealloc*sizeof(int *));
}
geids[ngedges] = max_gedge_id;
gefaceids[ngedges] = malloc(1*sizeof(int *));
gefaceids[ngedges][0] = 0;
}
continue; /* nothing else to do */
}
if (nef > max_loc_gfids) {
loc_gfids = (int *) realloc(loc_gfids,nef*sizeof(int));
max_loc_gfids = nef;
}
ngef = 0;
for (i = 0; i < nef; i++) {
eface = List_Entry(efaces,i);
if (MF_GEntDim(eface) == 2) {
loc_gfids[ngef] = MF_GEntID(eface);
ngef++;
}
}
switch (ngef) {
case 0:
/* Interior edge - we took care of the case of the isolated edge b4 */
ME_Set_GEntDim(edge,3);
eface = List_Entry(efaces,0);
ME_Set_GEntID(edge,MF_GEntID(eface));
break;
case 2:
if (loc_gfids[0] == loc_gfids[1]) {
if (gdim == 1) {
/* Looks like during face classification, this was tagged as
being a sharp edge. This means that it is a sharp edge on
the interior of a model face (same model face on both
sides) */
ME_Set_GEntDim(edge,1);
/* Check if such an edge was encountered before */
for (i = 0, fnd = 0; i < ngedges; i++) {
if (gefaceids[i][0] != 2)
continue;
if ((loc_gfids[0] == gefaceids[i][0]) &&
(gefaceids[i][0] == gefaceids[i][1])) {
fnd = 1;
break;
}
}
if (fnd)
ME_Set_GEntID(edge,geids[i]);
else {
max_gedge_id++;
ME_Set_GEntID(edge,max_gedge_id);
if (ngealloc == ngedges) {
ngealloc *= 2;
geids = (int *) realloc(geids,ngealloc*sizeof(int));
gefaceids = (int **) realloc(gefaceids,ngealloc*sizeof(int *));
}
geids[ngedges] = max_gedge_id;
gefaceids[ngedges] = malloc((1+ngef)*sizeof(int *));
gefaceids[ngedges][0] = ngef;
for (i = 0; i < ngef; i++)
gefaceids[ngedges][1+i] = loc_gfids[i];
ngedges++;
}
}
else {
/* edge must be on model face */
ME_Set_GEntDim(edge,2);
ME_Set_GEntID(edge,loc_gfids[0]);
}
}
else {
/* edge is on model edge between two faces */
ME_Set_GEntDim(edge,1);
/* Check if such an edge was encountered before */
for (i = 0, fnd = 0; i < ngedges; i++) {
if (gefaceids[i][0] != 2)
continue;
if (((loc_gfids[0] == gefaceids[i][1]) &&
(loc_gfids[1] == gefaceids[i][2])) ||
((loc_gfids[1] == gefaceids[i][1]) &&
(loc_gfids[0] == gefaceids[i][2]))) {
fnd = 1;
break;
}
}
if (fnd)
ME_Set_GEntID(edge,geids[i]);
else {
max_gedge_id++;
ME_Set_GEntID(edge,max_gedge_id);
if (ngealloc == ngedges) {
ngealloc *= 2;
geids = (int *) realloc(geids,ngealloc*sizeof(int));
gefaceids = (int **) realloc(gefaceids,ngealloc*sizeof(int *));
}
geids[ngedges] = max_gedge_id;
gefaceids[ngedges] = malloc((1+ngef)*sizeof(int *));
gefaceids[ngedges][0] = ngef;
for (i = 0; i < ngef; i++)
gefaceids[ngedges][1+i] = loc_gfids[i];
ngedges++;
}
}
break;
default:
/* if ngef is 1, edge is on model edge of non-manifold model
face
if ngef is >= 3, edge is on model edge at junction of
many model faces
*/
ME_Set_GEntDim(edge,1);
/* Check if a previously encountered model edge has this
combination of connected faces */
for (i = 0, fnd = 0; i < ngedges; i++) {
if (ngef != gefaceids[i][0])
continue; /* number of connected model faces is different */
/* see if all the model faces of the current edge can be found
in the i'th model edge's faces */
fnd2 = 0;
for (j = 0; j < ngef; j++) {
fnd2 = 0;
for (k = 0; k < ngef; k++) {
if (loc_gfids[j] == gefaceids[i][1+k]) {
fnd2 = 1;
break;
}
}
/* Did not find loc_gfid[j] in the list gefaceids[i] */
if (!fnd2)
break;
}
/* if a model face connected to this edge was not found in the
model face list of the previously processed, then the two model
edges are obviously different */
if (!fnd2)
continue;
else {
fnd = 1;
break;
}
}
if (fnd)
ME_Set_GEntID(edge,geids[i]);
else {
max_gedge_id++;
ME_Set_GEntID(edge,max_gedge_id);
if (ngealloc == ngedges) {
ngealloc *= 2;
geids = (int *) realloc(geids,ngealloc*sizeof(int));
gefaceids = (int **) realloc(gefaceids,ngealloc*sizeof(int *));
}
geids[ngedges] = max_gedge_id;
gefaceids[ngedges] = malloc((1+ngef)*sizeof(int *));
gefaceids[ngedges][0] = ngef;
for (i = 0; i < ngef; i++)
gefaceids[ngedges][1+i] = loc_gfids[i];
ngedges++;
}
break;
}
List_Delete(efaces); /* needed efaces in case 0 */
}
free(loc_gfids);
if (use_geometry == 1) {
#ifdef MSTK_USE_MARKERS
int processedmk = MSTK_GetMarker();
int submk = MSTK_GetMarker();
#else
MAttrib_ptr processedatt = MAttrib_New(mesh, "processed", INT, MEDGE);
MAttrib_ptr sublistatt = MAttrib_New(mesh, "sublist", INT, MEDGE);
#endif
/* Now assign model edge IDs based on whether a sharp set of edges
enclose a set of edges */
for (i = 0; i < ngedges; i++) {
/* Find all mesh edges with this model edge id */
geedges = List_New(10);
idx = 0;
while ((edge = MESH_Next_Edge(mesh,&idx))) {
if (ME_GEntDim(edge) == 1 && ME_GEntID(edge) == geids[i])
List_Add(geedges,edge);
}
/* Process edges of this list and subdivide them into subedges */
/* The way we do that is
1) we put an unprocessed edge from the original list in a subedge
list
2) we then add its neighboring edges to subedge list if they are
of the same color (same model edge id) and do not have a sharp
edge separating them from the current edge
3) we then process the next edge in the subedge list
4) we are done if we cannot find any more neighbors of edges in
the subedge list to add to the subedge list
5) we then repeat steps 1 through 4 until we are left with no
more edges to process from the original list
*/
nsub = 0;
idx = 0;
while ((edge = List_Next_Entry(geedges,&idx))) {
int emarked;
#ifdef MSTK_USE_MARKERS
emarked = MEnt_IsMarked(edge,processedmk);
#else
MEnt_Get_AttVal(edge, processedatt, &emarked, &rval, &pval);
#endif
if (emarked)
continue;
/* Found a edge in geedges that has not been processed */
#ifdef MSTK_USE_MARKERS
MEnt_Mark(edge,processedmk);
#else
MEnt_Set_AttVal(edge, processedatt, 1, 0.0, NULL);
#endif
subedges = List_New(10);
List_Add(subedges,edge);
#ifdef MSTK_USE_MARKERS
MEnt_Mark(edge,submk);
#else
MEnt_Set_AttVal(edge, sublistatt, 1, 0.0, NULL);
#endif
idx2 = 0;
while ((subedge = List_Next_Entry(subedges,&idx2))) {
geid = ME_GEntID(subedge);
ev[0] = ME_Vertex(subedge,0);
ev[1] = ME_Vertex(subedge,1);
for (j = 0; j < 2; j++) {
vedges = MV_Edges(ev[j]);
nve = List_Num_Entries(vedges);
vbedges = List_New(nve); /* list of boundary edges cnctd 2 vert */
for (k = 0; k < nve; k++) {
adjedge = List_Entry(vedges,k);
if (ME_GEntDim(adjedge) == 1)
List_Add(vbedges,adjedge);
}
nbe = List_Num_Entries(vbedges);
if (nbe == 2) {
/* we might be on a model vertex or on a model edge */
adjedge = List_Entry(vbedges,0);
if (adjedge == subedge)
adjedge = List_Entry(vbedges,1);
geid2 = ME_GEntID(adjedge);
if (geid == geid2) {
/* The two edges are of the same ID. If the angle
between them is not sharp they can be classified as
being on the same subedge */
cosang = MEs_Angle(subedge,adjedge);
if (cosang <= COSSHARPANG) {
/* Add edge2 to subedge list unless its already there */
int adjemarked;
#ifdef MSTK_USE_MARKERS
adjemarked = MEnt_IsMarked(adjedge,submk);
#else
MEnt_Get_AttVal(adjedge, sublistatt, &adjemarked, &rval, &pval);
#endif
if (!adjemarked) {
List_Add(subedges,adjedge);
#ifdef MSTK_USE_MARKERS
MEnt_Mark(adjedge,submk);
#else
MEnt_Set_AttVal(adjedge, sublistatt, 1, 0.0, NULL);
#endif
}
}
else {
/* The two edges make a very sharp angle. We will
consider the edge b/w them to be a model vertex */
/* Tag the edge as being on a model vertex (we don't
know the model vertex ID as yet) and continue */
MV_Set_GEntDim(ev[j],0);
MV_Set_GEntID(ev[j],0);
}
}
else {
/* we reached a model vertex */
/* Tag the edge as being on a model vertex (we don't know
the model vertex ID as yet) and continue */
MV_Set_GEntDim(ev[j],0);
MV_Set_GEntID(ev[j],0);
}
}
else {
/* we reached a a model vertex */
/* Tag the edge as being on a model vertex (we don't know
the model vertex ID as yet) and continue */
ME_Set_GEntDim(ev[j],0);
ME_Set_GEntID(ev[j],0);
}
List_Delete(vedges);
List_Delete(vbedges);
}
/* Finished processing all neighbors of the edge */
}
/* Now we have a list of edges which we believe constitutes a
model edge by itself. If this is the first subedge (which
means it could also be the entire model edge originally
considered), leave the model edge tag as it is. If not,
assign the edges in the subedge a new model edge ID */
if (nsub != 0) {
max_gedge_id++;
idx2 = 0;
while ((subedge = List_Next_Entry(subedges,&idx2)))
ME_Set_GEntID(subedge,max_gedge_id);
}
nsub++;
/* Done with this subedge */
#ifdef MSTK_USE_MARKERS
idx2 = 0;
while ((subedge = List_Next_Entry(subedges,&idx2))) {
MEnt_Mark(subedge,processedmk);
MEnt_Unmark(subedge,submk);
}
#else
idx2 = 0;
while ((subedge = List_Next_Entry(subedges,&idx2))) {
MEnt_Set_AttVal(subedge, processedatt, 1, 0.0, NULL);
MEnt_Set_AttVal(subedge, sublistatt, 0, 0.0, NULL);
}
#endif
List_Delete(subedges);
}
#ifdef MSTK_USE_MARKERS
List_Unmark(geedges,processedmk);
#else
idx2 = 0;
while ((edge = List_Next_Entry(geedges, &idx2)))
MEnt_Set_AttVal(edge, processedatt, 1, 0.0, NULL);
#endif
List_Delete(geedges);
}
#ifdef MSTK_USE_MARKERS
MSTK_FreeMarker(processedmk);
MSTK_FreeMarker(submk);
#else
MAttrib_Delete(processedatt);
MAttrib_Delete(sublistatt);
#endif
} /* if use_geometry == 1 */
free(geids);
for (i = 0; i < ngedges; i++)
free(gefaceids[i]);
free(gefaceids);
return 1;
}
/**
* List_Move - delete from one list and add as another's head
* @list: the entry to move
* @head: the head that will precede our entry
*/
static MV_INLINE void List_Move(List_Head *list, List_Head *head)
{
__List_Del(list->prev, list->next);
List_Add(list, head);
}
int GModel::exportDiscreteGEOInternals()
{
if(_geo_internals) delete _geo_internals;
_geo_internals = new GEO_Internals;
for(viter it = firstVertex(); it != lastVertex(); it++){
Vertex *v = Create_Vertex((*it)->tag(), (*it)->x(), (*it)->y(), (*it)->z(),
(*it)->prescribedMeshSizeAtVertex(), 1.0);
Tree_Add(this->getGEOInternals()->Points, &v);
}
for(eiter it = firstEdge(); it != lastEdge(); it++){
if((*it)->geomType() == GEntity::DiscreteCurve){
Curve *c = Create_Curve((*it)->tag(), MSH_SEGM_DISCRETE, 1,
NULL, NULL, -1, -1, 0., 1.);
List_T *points = Tree2List(_geo_internals->Points);
GVertex *gvb = (*it)->getBeginVertex();
GVertex *gve = (*it)->getEndVertex();
int nb = 2 ;
c->Control_Points = List_Create(nb, 1, sizeof(Vertex *));
for(int i = 0; i < List_Nbr(points); i++) {
Vertex *v;
List_Read(points, i, &v);
if (v->Num == gvb->tag()) {
List_Add(c->Control_Points, &v);
c->beg = v;
}
if (v->Num == gve->tag()) {
List_Add(c->Control_Points, &v);
c->end = v;
}
}
End_Curve(c);
Tree_Add(this->getGEOInternals()->Curves, &c);
CreateReversedCurve(c);
List_Delete(points);
}
}
for(fiter it = firstFace(); it != lastFace(); it++){
if((*it)->geomType() == GEntity::DiscreteSurface){
Surface *s = Create_Surface((*it)->tag(), MSH_SURF_DISCRETE);
std::list<GEdge*> edges = (*it)->edges();
s->Generatrices = List_Create(edges.size(), 1, sizeof(Curve *));
List_T *curves = Tree2List(_geo_internals->Curves);
Curve *c;
for(std::list<GEdge*>::iterator ite = edges.begin(); ite != edges.end(); ite++){
for(int i = 0; i < List_Nbr(curves); i++) {
List_Read(curves, i, &c);
if (c->Num == (*ite)->tag()) {
List_Add(s->Generatrices, &c);
}
}
}
Tree_Add(this->getGEOInternals()->Surfaces, &s);
List_Delete(curves);
}
}
// TODO: create Volumes from discreteRegions
Msg::Debug("Geo internal model has:");
Msg::Debug("%d Vertices", Tree_Nbr(_geo_internals->Points));
Msg::Debug("%d Edges", Tree_Nbr(_geo_internals->Curves));
Msg::Debug("%d Faces", Tree_Nbr(_geo_internals->Surfaces));
return 1;
}
List_ptr ME_Faces_R1R2(MEdge_ptr e) {
int idx, idx1, idx2, found;
MFace_ptr face, lstface;
MRegion_ptr reg;
List_ptr rfaces, vfaces1, efaces, vregs0, vregs1, cmnregs=NULL;
efaces = List_New(0);
vregs0 = MV_Regions(e->vertex[0]);
vregs1 = MV_Regions(e->vertex[1]);
if (vregs0 || vregs1) {
if (vregs0 && vregs1) {
cmnregs = List_New(0);
idx = 0;
while ((reg = List_Next_Entry(vregs0,&idx))) {
if (List_Contains(vregs1,reg))
List_Add(cmnregs,reg);
}
}
if (vregs0)
List_Delete(vregs0);
if (vregs1)
List_Delete(vregs1);
if (!List_Num_Entries(cmnregs)) {
List_Delete(cmnregs);
return NULL;
}
idx = 0;
while ((reg = List_Next_Entry(cmnregs,&idx))) {
rfaces = MR_Faces(reg);
idx1 = 0;
while ((face = List_Next_Entry(rfaces,&idx1))) {
if (MF_UsesEntity(face,(MEntity_ptr) e,MEDGE)) {
idx2 = 0; found = 0;
while ((lstface = List_Next_Entry(efaces,&idx2))) {
if (MFs_AreSame(face,lstface)) {
found = 1;
break;
}
}
if (!found)
List_Add(efaces,face);
}
}
List_Delete(rfaces);
}
List_Delete(cmnregs);
}
else { /* Must be only faces are connected to edge */
vfaces1 = MV_Faces(e->vertex[0]);
if (vfaces1) {
idx = 0;
while ((face = List_Next_Entry(vfaces1,&idx))) {
if (MF_UsesEntity(face,e->vertex[1],MVERTEX))
List_Add(efaces,face);
}
}
}
if (List_Num_Entries(efaces))
return efaces;
else {
List_Delete(efaces);
return NULL;
}
}
void Stack_Push(struct Stack* stack, int vertex)
{
List_Add(&(*stack).list, vertex);
}
MVertex_ptr ME_Collapse(MEdge_ptr e, MVertex_ptr vkeep_in, int topoflag,
List_ptr *deleted_entities) {
MVertex_ptr vdel, vkeep, ev00, ev01, ev10, ev11, vert;
MEdge_ptr edge, edge2, oldedges[3], nuedges[2];
MFace_ptr face, face2, rface1, rface2;
MRegion_ptr reg, reg2;
List_ptr vedges, efaces, eregs, fedges, rfaces, fverts1, fverts2, vfaces;
int idx1, idx2, idx3, dir, status, nfe, nrf, allfound, degenerate;
int i, j, nfe2, nfv1, nfv2;
status = 1;
if (vkeep_in == NULL) {
vdel = ME_Vertex(e,0);
vkeep = ME_Vertex(e,1);
}
else {
vkeep = vkeep_in;
vdel = ME_OppVertex(e,vkeep);
}
int dimkeep, dimdel;
dimkeep = MV_GEntDim(vkeep); /* Model entity dim of vertex to keep */
dimdel = MV_GEntDim(vdel); /* Model entity dim of vertex to delete */
if (topoflag == 1) {
if (dimkeep == dimdel) {
if (MV_GEntID(vkeep) != MV_GEntID(vdel))
status = 0; /* cannot allow since it will cause
a dimensional reduction in mesh */
}
else if (dimdel < dimkeep) {
if (vkeep_in == NULL) {
/* If no preference was indicated on which vertex to retain,
we can collapse in the other direction */
MVertex_ptr vtemp = vdel;
vdel = vkeep;
vkeep = vtemp;
}
else
status = 0; /* can't reverse order or vertices and boundary of
mesh will get messed up if we go through as is */
}
}
else if (vkeep_in == NULL) {
/* If no preference was indicated for the kept vertex and
topological conformity with the underlying geometric model was
not requested, we prefer to keep an external boundary vertex
over an interior vertex or interior boundary vertex. This is
because it is more likely that the external boundary vertex
would have a boundary condition applied to it. If a preference
was indicated, we just have to respect that. */
int vdel_external = 0;
/* Check if any edges connected to vdel have only one connected face */
vedges = MV_Edges(vdel);
idx1 = 0;
while ((edge = (MEdge_ptr) List_Next_Entry(vedges,&idx1))) {
List_ptr efaces = ME_Faces(edge);
int nef = List_Num_Entries(efaces);
List_Delete(efaces);
if (nef < 2) {
vdel_external = 1;
break;
}
}
List_Delete(vedges);
/* check if any face connected to vdel has only one region
connected to it */
if (!vdel_external) {
vfaces = MV_Faces(vdel);
idx1 = 0;
while ((face = (MFace_ptr) List_Next_Entry(vfaces,&idx1))) {
List_ptr fregs = MF_Regions(face);
int nfr = fregs ? List_Num_Entries(fregs) : 0;
if (fregs) List_Delete(fregs);
if (nfr == 1) {
vdel_external = 0;
break;
}
}
List_Delete(vfaces);
}
if (vdel_external) {
/* swap the vertices in the hope that vkeep is not also on an
external boundary. Since we have to go through with the
collapse anyway, there is no use of doing a detailed check
for whether vkeep is also on an external boundary */
MVertex_ptr vtemp = vdel;
vdel = vkeep;
vkeep = vtemp;
}
}
if (status == 0)
return NULL; /* Cannot collapse due to constraints of topological
conformity with geometric model */
*deleted_entities = List_New(10);
/* Need to collect this in advance because the info gets messed up later */
efaces = ME_Faces(e);
eregs = ME_Regions(e);
/* Replace vdel with vkeep in all edges connected to vdel */
vedges = MV_Edges(vdel);
idx1 = 0;
while ((edge = List_Next_Entry(vedges,&idx1))) {
ME_Replace_Vertex(edge,vdel,vkeep);
}
List_Delete(vedges);
/* Remove edge 'e' from all faces connected to e */
/* This part of the code is using some reliance on the internal
implementation of MF_Edges. While unlikely, it _might_ break if
the innards of MF_Edges are changed */
idx1 = 0;
while ((face = List_Next_Entry(efaces,&idx1))) {
fedges = MF_Edges(face,1,0);
nfe = List_Num_Entries(fedges);
/* Find the edge before and after e in the face */
oldedges[0] = oldedges[2] = NULL;
for (i = 0; i < nfe; i++) {
edge = List_Entry(fedges,i);
if (edge == e) continue;
dir = MF_EdgeDir_i(face,i);
if (ME_Vertex(edge,dir) == vkeep)
oldedges[0] = edge;
else if (ME_Vertex(edge,!dir) == vkeep)
oldedges[2] = edge;
}
oldedges[1] = e;
nuedges[0] = oldedges[0];
nuedges[1] = oldedges[2];
/* Replace oldedges[0], oldedges[1] (=e), oldedges[2] with
oldedges[0], oldedges[2] since e is degenerate */
MF_Replace_Edges(face,3,oldedges,2,nuedges);
List_Delete(fedges);
}
/* Delete topologically degenerate regions */
/* Defined as two faces of the regions having the same vertices */
if (eregs) {
idx1 = 0;
while ((reg = List_Next_Entry(eregs,&idx1))) {
rfaces = MR_Faces(reg);
nrf = List_Num_Entries(rfaces);
if (nrf == 4) {
List_ptr rverts = MR_Vertices(reg);
if (List_Num_Entries(rverts) == 4) {
MR_Delete(reg,0); /* This is a tet - it will become degenerate */
}
List_Delete(rverts);
}
else {
degenerate = 0;
for (i = 0; i < nrf; i++) {
rface1 = List_Entry(rfaces,i);
fverts1 = MF_Vertices(rface1,1,0);
nfv1 = List_Num_Entries(fverts1);
for (j = i+1; j < nrf; j++) {
rface2 = List_Entry(rfaces,j);
fverts2 = MF_Vertices(rface2,1,0);
nfv2 = List_Num_Entries(fverts2);
if (nfv1 != nfv2) {
List_Delete(fverts2);
continue; /* can't be exactly coincident */
}
allfound = 1;
idx2 = 0;
while ((vert = List_Next_Entry(fverts2,&idx2))) {
if (!List_Contains(fverts1,vert)) {
allfound = 0;
break;
}
}
List_Delete(fverts2);
if (allfound) {
degenerate = 1;
break;
}
} /* for (j = i+1 ... */
List_Delete(fverts1);
if (degenerate) break;
} /* for (i = 0; i < nrf;.... */
if (degenerate) {
List_Add(*deleted_entities,reg);
MR_Delete(reg,0);
}
} /* if (nrf == 4) .. else ... */
List_Delete(rfaces);
} /* while ((reg = ...)) */
}
/* Delete topologically degenerate faces */
if (efaces) {
idx1 = 0;
while ((face = List_Next_Entry(efaces,&idx1))) {
fedges = MF_Edges(face,1,0);
if (List_Num_Entries(fedges) == 2) {
/* Disconnect the regions from the face before deleting */
List_ptr fregs = MF_Regions(face);
if (fregs) {
idx2 = 0;
while ((reg = List_Next_Entry(fregs,&idx2)))
MR_Rem_Face(reg,face);
List_Delete(fregs);
}
List_Add(*deleted_entities,face);
MF_Delete(face,0);
}
List_Delete(fedges);
}
List_Delete(efaces);
}
/* Now merge edges which have the same end vertices */
/* Prefer to preserve edges on external boundaries over internal edges */
vedges = MV_Edges(vkeep);
idx1 = 0;
while ((edge = List_Next_Entry(vedges,&idx1))) {
if (edge == e) continue;
ev00 = ME_Vertex(edge,0);
ev01 = ME_Vertex(edge,1);
idx2 = 0;
while ((edge2 = List_Next_Entry(vedges,&idx2))) {
if (edge == e || edge == edge2) continue;
ev10 = ME_Vertex(edge2,0);
ev11 = ME_Vertex(edge2,1);
if ((ev00 == ev10 && ev01 == ev11) ||
(ev00 == ev11 && ev10 == ev01)) {
int external_edge, external_edge2;
int edim = 4;
external_edge = 0;
edim = ME_GEntDim(edge);
if (edim == 1 || edim == 2 || edim == 4) { /* check if external edge */
efaces = ME_Faces(edge);
int nef = List_Num_Entries(efaces);
if (nef == 1) {
external_edge = 1;
}
else {
idx3 = 0;
while ((face = List_Next_Entry(efaces,&idx2))) {
List_ptr fregs = MF_Regions(face);
int nfr = fregs ? List_Num_Entries(fregs) : 0;
if (fregs) List_Delete(fregs);
if (nfr == 1) {
external_edge = 1;
break;
}
}
}
List_Delete(efaces);
}
external_edge2 = 0;
edim = ME_GEntDim(edge2);
if (edim == 1 || edim == 2 || edim == 4) { /* check if external edge */
efaces = ME_Faces(edge2);
int nef = List_Num_Entries(efaces);
if (nef == 1) {
external_edge2 = 1;
}
else {
idx3 = 0;
while ((face = List_Next_Entry(efaces,&idx2))) {
List_ptr fregs = MF_Regions(face);
int nfr = fregs ? List_Num_Entries(fregs) : 0;
if (fregs) List_Delete(fregs);
if (nfr == 1) {
external_edge2 = 1;
break;
}
}
}
List_Delete(efaces);
}
/* If edge2 is not external or both edges are external, go
ahead and merge (edge2 will be deleted subject to
topological checks if topoflag is 1) */
if (!external_edge2 || (external_edge && external_edge2)) {
MEs_Merge(edge,edge2,topoflag);
List_Rem(vedges,edge2);
List_Add(*deleted_entities,edge2);
break;
}
}
}
}
List_Delete(vedges);
/* Merge faces with the same set of edges */
vfaces = MV_Faces(vkeep);
if (vfaces) {
idx1 = 0;
while ((face = List_Next_Entry(vfaces,&idx1))) {
fedges = MF_Edges(face,1,0);
nfe = List_Num_Entries(fedges);
idx2 = 0;
while ((face2 = List_Next_Entry(vfaces,&idx2))) {
List_ptr fedges2;
if (face2 == face) continue;
fedges2 = MF_Edges(face2,1,0);
nfe2 = List_Num_Entries(fedges2);
if (nfe != nfe2) {
List_Delete(fedges2);
continue;
}
allfound = 1;
for (i = 0; i < nfe2; i++) {
edge = List_Entry(fedges2,i);
if (!List_Contains(fedges,edge)) {
allfound = 0;
break;
}
}
List_Delete(fedges2);
if (allfound) {
List_ptr fregs = MF_Regions(face);
int external_face = fregs ? (List_Num_Entries(fregs) == 1) : 0;
if (fregs) List_Delete(fregs);
List_ptr fregs2 = MF_Regions(face2);
int external_face2 = fregs2 ? (List_Num_Entries(fregs2) == 1) : 0;
if (fregs2) List_Delete(fregs2);
/* Proceed with merge (which will delete face2) only if face2 is
not an external face or both face and face2 are external */
if (!external_face2 || (external_face && external_face2)) {
MFs_Merge(face,face2,topoflag);
List_Rem(vfaces,face2);
List_Add(*deleted_entities,face2);
break;
}
}
} /* while (face2 = List_Next_Entry(vfaces,... */
List_Delete(fedges);
} /* while (face = List_Next_Entry(vfaces,... */
List_Delete(vfaces);
}
/* Now actually delete the collapse edge and the to-be-merged vertex */
ME_Delete(e,0);
List_Add(*deleted_entities,e);
MV_Delete(vdel,0);
List_Add(*deleted_entities,vdel);
if (eregs) {
idx1 = 0;
while ((reg = List_Next_Entry(eregs,&idx1)))
MR_Update_ElementType(reg);
List_Delete(eregs);
}
return vkeep;
}
int MESH_AssignGlobalIDs_Region(Mesh_ptr submesh, MSTK_Comm comm) {
int i, j, k, nfv, nbf, nof, ngf, nf, nr, mesh_info[10], global_id;
MVertex_ptr mv;
MFace_ptr mf;
MRegion_ptr mr;
List_ptr boundary_faces, mfverts;
int *loc, face_id[MAXPV2+3],index_nbf, max_nbf, iloc, is_boundary;
int *global_mesh_info, *list_face, *recv_list_face, *face_ov_label, *id_on_ov_list;
int rank, num;
MPI_Comm_rank(comm,&rank);
MPI_Comm_size(comm,&num);
for (i = 0; i < 10; i++) mesh_info[i] = 0;
nf = MESH_Num_Faces(submesh);
nr = MESH_Num_Regions(submesh);
mesh_info[3] = nf;
mesh_info[4] = nr;
/*
collect 'boundary' faces
if endpoints are either GHOST or OVERLAP, then it is a boundary face
*/
nbf = 0; boundary_faces = List_New(10);
for(i = 0; i < nf; i++) {
is_boundary = 1;
mf = MESH_Face(submesh,i);
mfverts = MF_Vertices(mf,1,0);
nfv = List_Num_Entries(mfverts);
for(j = 0; j < nfv; j++) {
mv = List_Entry(mfverts,j);
if(MV_PType(mv)!=PGHOST && MV_PType(mv)!=POVERLAP)
is_boundary = 0;
}
if(is_boundary) {
MF_Flag_OnParBoundary(mf);
List_Add(boundary_faces,mf);
nbf++;
}
List_Delete(mfverts);
}
/* printf("num of boundary faces %d, on rank %d\n", nbf,rank); */
mesh_info[6] = nbf;
List_Sort(boundary_faces,nbf,sizeof(MFace_ptr),compareFaceID);
global_mesh_info = (int *)malloc(10*num*sizeof(int));
MPI_Allgather(mesh_info,10,MPI_INT,global_mesh_info,10,MPI_INT,comm);
max_nbf = 0;
for(i = 0; i < num; i++)
if(max_nbf < global_mesh_info[10*i+6])
max_nbf = global_mesh_info[10*i+6];
list_face = (int *)malloc(max_nbf*(MAXPV2+1)*sizeof(int));
recv_list_face = (int *)malloc(num*max_nbf*(MAXPV2+1)*sizeof(int));
/* indicate if a face is overlapped */
face_ov_label = (int *)malloc(num*max_nbf*sizeof(int));
for (i = 0; i < num*max_nbf; i++)
face_ov_label[i] = 0;
id_on_ov_list = (int *)malloc(max_nbf*sizeof(int));
/* pack face information to send */
index_nbf = 0;
for(i = 0; i < nbf; i++) {
mf = List_Entry(boundary_faces,i);
mfverts = MF_Vertices(mf,1,0);
nfv = List_Num_Entries(mfverts);
list_face[index_nbf] = nfv;
for(j = 0; j < nfv; j++)
list_face[index_nbf+j+1] = MV_GlobalID(List_Entry(mfverts,j));
index_nbf += MAXPV2+1;
List_Delete(mfverts);
}
MPI_Allgather(list_face,(MAXPV2+1)*max_nbf,MPI_INT,recv_list_face,(MAXPV2+1)*max_nbf,MPI_INT,comm);
ngf = 0;
/* for processor other than 0 */
if(rank > 0) {
for(i = 0; i < nbf; i++) {
mf = List_Entry(boundary_faces,i);
if(MF_GlobalID(mf) > 0) continue; /* if already assigned */
mfverts = MF_Vertices(mf,1,0);
nfv = List_Num_Entries(mfverts);
face_id[0] = nfv;
for(k = 0; k < nfv; k++)
face_id[k+1] = MV_GlobalID(List_Entry(mfverts,k));
List_Delete(mfverts);
for(j = 0; j < rank; j++) {
loc = (int *)bsearch(&face_id,
&recv_list_face[(MAXPV2+1)*max_nbf*j],
global_mesh_info[10*j+6],
(MAXPV2+1)*sizeof(int),
compareFaceINT);
if(loc) {
iloc = (int)(loc - &recv_list_face[(MAXPV2+1)*max_nbf*j])/(MAXPV2+1);
MF_Set_PType(mf,PGHOST);
MF_Set_MasterParID(mf,j);
face_ov_label[max_nbf*j+iloc] |= 1;
id_on_ov_list[i] = iloc;
ngf++;
break;
}
}
}
}
/* num of ghost verts */
mesh_info[9] = ngf;
MPI_Allgather(mesh_info,10,MPI_INT,global_mesh_info,10,MPI_INT,comm);
/* since this is a OR reduction, we can use MPI_IN_PLACE, send buffer same as recv buffer */
MPI_Allreduce(MPI_IN_PLACE,face_ov_label,num*max_nbf,MPI_INT,MPI_LOR,comm);
/* Assign global ID for non ghost face */
global_id = 1;
for(i = 0; i < rank; i++)
global_id = global_id + global_mesh_info[10*i+3] - global_mesh_info[10*i+9];
for(i = 0; i < nf; i++) {
mf = MESH_Face(submesh,i);
if (MF_PType(mf) == PGHOST) continue;
if (!MF_GlobalID(mf)) MF_Set_GlobalID(mf,global_id++);
MF_Set_MasterParID(mf,rank);
}
/* label OVERLAP face */
nof = 0;
for(i = 0; i < nbf; i++)
if(face_ov_label[rank*max_nbf+i]) {
mf = List_Entry(boundary_faces,i);
MF_Set_PType(mf,POVERLAP);
nof++;
}
/* printf("num of ghost faces %d, overlap faces %d on rank %d\n", ngf, nof, rank); */
/* this time only global id are sent */
for(i = 0; i < nbf; i++) {
mf = List_Entry(boundary_faces,i);
list_face[i] = MF_GlobalID(mf);
}
MPI_Allgather(list_face,max_nbf,MPI_INT,recv_list_face,max_nbf,MPI_INT,comm);
for(i = 0; i < nbf; i++) {
mf = List_Entry(boundary_faces,i);
if(MF_PType(mf)==PGHOST) {
int gid = recv_list_face[MF_MasterParID(mf)*max_nbf+id_on_ov_list[i]];
#ifdef DEBUG
if (MF_GlobalID(mf) && MF_GlobalID(mf) != gid)
MSTK_Report("MESH_AssignGlobalIDs_region",
"Ghost face already has different global ID", MSTK_WARN);
#endif
MF_Set_GlobalID(mf, gid);
}
}
/* assign region global id */
global_id = 1;
for(i = 0; i < rank; i++)
global_id = global_id + global_mesh_info[10*i+4];
for(i = 0; i < nr; i++) {
mr = MESH_Region(submesh,i);
MR_Set_PType(mr,PINTERIOR);
if (!MR_GlobalID(mr)) MR_Set_GlobalID(mr,global_id++);
MR_Set_MasterParID(mr,rank);
}
List_Delete(boundary_faces);
free(global_mesh_info);
free(face_ov_label);
free(id_on_ov_list);
free(list_face);
free(recv_list_face);
return 1;
}