OverlapMetaIteratorGet(std::vector<std::string> const & rV)
: V(rV), IV(V.size()), I(V.size()), t(0), maxaread(-1)
{
for ( uint64_t i = 0; i < V.size(); ++i )
{
IV[i] = libmaus2::dazzler::align::OverlapIndexer::getIndexName(V[i]);
index_type::unique_ptr_type Tptr(new index_type(IV[i]));
I[i] = UNIQUE_PTR_MOVE(Tptr);
t += I[i]->size();
maxaread = std::max(maxaread,libmaus2::dazzler::align::OverlapIndexer::getMaximumARead(V[i]));
}
}
static indexer_type::unique_ptr_type creatIndexer(std::iostream * IOSI)
{
indexer_type::unique_ptr_type Pptr;
if ( IOSI )
{
indexer_type::unique_ptr_type Tptr(new indexer_type(*IOSI));
Pptr = UNIQUE_PTR_MOVE(Tptr);
}
return UNIQUE_PTR_MOVE(Pptr);
}
static libmaus2::aio::InputOutputStream::unique_ptr_type openIndexStream(std::string const & ifn, bool const createindex)
{
libmaus2::aio::InputOutputStream::unique_ptr_type Pptr;
if ( createindex )
{
libmaus2::aio::InputOutputStream::unique_ptr_type Tptr(libmaus2::aio::InputOutputStreamFactoryContainer::constructUnique(ifn,std::ios::in|std::ios::out|std::ios::trunc|std::ios::binary));
Pptr = UNIQUE_PTR_MOVE(Tptr);
}
return UNIQUE_PTR_MOVE(Pptr);
}
init_ws()
{
#ifndef GEM
extern alice_window main_win;
curr_window = &main_win;
#endif
curr_workspace = ws_list = Tptr(main_ws);
#ifndef GEM
main_win.wspace = curr_workspace;
#endif
linkup( curr_workspace, 0, make_stub( C_ROOT ) );
work_name(curr_workspace) = "main";
work_debug( curr_workspace ) = 0;
#ifdef GEM
do_gdupdate();
#endif
printt1( "Initialize workspaces - main_ws is %x\n", Tptr(main_ws) );
/* an init_pwork will be done later if we decide to clip */
}
FastABgzfDecoder::unique_ptr_type getStream(std::string const & filename, uint64_t const id) const
{
FastABgzfDecoder::unique_ptr_type Tptr(new FastABgzfDecoder(filename,(*this)[id],blocksize));
return UNIQUE_PTR_MOVE(Tptr);
}
FastABgzfDecoder::unique_ptr_type getStream(std::istream & in, uint64_t const id) const
{
FastABgzfDecoder::unique_ptr_type Tptr(new FastABgzfDecoder(in,(*this)[id],blocksize));
return UNIQUE_PTR_MOVE(Tptr);
}
int main(int argc, char *argv[])
{
#include "postProcess.H"
#include "setRootCase.H"
#include "createTime.H"
#include "createMesh.H"
#include "createControls.H"
#include "createFields.H"
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Info<< "\nCalculating displacement field\n" << endl;
while (runTime.loop())
{
Info<< "Iteration: " << runTime.value() << nl << endl;
#include "readSolidDisplacementFoamControls.H"
int iCorr = 0;
scalar initialResidual = 0;
do
{
if (thermalStress)
{
volScalarField& T = Tptr();
solve
(
fvm::ddt(T) == fvm::laplacian(DT, T)
);
}
{
fvVectorMatrix DEqn
(
fvm::d2dt2(D)
==
fvm::laplacian(2*mu + lambda, D, "laplacian(DD,D)")
+ divSigmaExp
);
if (thermalStress)
{
const volScalarField& T = Tptr();
DEqn += fvc::grad(threeKalpha*T);
}
//DEqn.setComponentReference(1, 0, vector::X, 0);
//DEqn.setComponentReference(1, 0, vector::Z, 0);
initialResidual = DEqn.solve().max().initialResidual();
if (!compactNormalStress)
{
divSigmaExp = fvc::div(DEqn.flux());
}
}
{
volTensorField gradD(fvc::grad(D));
sigmaD = mu*twoSymm(gradD) + (lambda*I)*tr(gradD);
if (compactNormalStress)
{
divSigmaExp = fvc::div
(
sigmaD - (2*mu + lambda)*gradD,
"div(sigmaD)"
);
}
else
{
divSigmaExp += fvc::div(sigmaD);
}
}
} while (initialResidual > convergenceTolerance && ++iCorr < nCorr);
#include "calculateStress.H"
Info<< "ExecutionTime = " << runTime.elapsedCpuTime() << " s"
<< " ClockTime = " << runTime.elapsedClockTime() << " s"
<< nl << endl;
}
Info<< "End\n" << endl;
return 0;
}