/**
* Creates an XMLNode object from this.
*/
XMLNode ReactionGlyph::toXML() const
{
XMLNamespaces xmlns = XMLNamespaces();
XMLTriple triple = XMLTriple("reactionGlyph", "", "");
XMLAttributes att = XMLAttributes();
// add the SBase Ids
addSBaseAttributes(*this,att);
addGraphicalObjectAttributes(*this,att);
if(this->isSetReactionId()) att.add("reaction",this->mReaction);
XMLToken token = XMLToken(triple, att, xmlns);
XMLNode node(token);
// add the notes and annotations
if(this->mNotes) node.addChild(*this->mNotes);
if(this->mAnnotation) node.addChild(*this->mAnnotation);
if(this->mCurve.getNumCurveSegments()==0)
{
// write the bounding box
node.addChild(this->mBoundingBox.toXML());
}
else
{
// add the curve
node.addChild(this->mCurve.toXML());
}
// add the list of species reference glyphs
if(this->mSpeciesReferenceGlyphs.size()>0)
{
node.addChild(this->mSpeciesReferenceGlyphs.toXML());
}
return node;
}
/**
* Creates an XMLNode object from this.
*/
XMLNode ListOfSpeciesReferenceGlyphs::toXML() const
{
XMLNamespaces xmlns = XMLNamespaces();
XMLTriple triple = XMLTriple("listOfSpeciesReferenceGlyphs", "http://projects.eml.org/bcb/sbml/level2", "");
XMLAttributes att = XMLAttributes();
XMLToken token = XMLToken(triple, att, xmlns);
XMLNode node(token);
// add the notes and annotations
bool end=true;
if(this->mNotes)
{
node.addChild(*this->mNotes);
end=false;
}
if(this->mAnnotation)
{
node.addChild(*this->mAnnotation);
end=false;
}
unsigned int i,iMax=this->size();
const SpeciesReferenceGlyph* object=NULL;
for(i=0;i<iMax;++i)
{
object=dynamic_cast<const SpeciesReferenceGlyph*>(this->get(i));
assert(object);
node.addChild(object->toXML());
}
if(end==true && iMax==0)
{
node.setEnd();
}
return node;
}
/**
* Creates an XMLNode object from this.
*/
XMLNode Curve::toXML() const
{
XMLNamespaces xmlns = XMLNamespaces();
XMLTriple triple = XMLTriple("curve", "", "");
XMLAttributes att = XMLAttributes();
// add the SBase Ids
addSBaseAttributes(*this,att);
XMLToken token = XMLToken(triple, att, xmlns);
XMLNode node(token);
// add the notes and annotations
bool end=true;
if(this->mNotes)
{
node.addChild(*this->mNotes);
end=false;
}
if(this->mAnnotation)
{
node.addChild(*this->mAnnotation);
end=false;
}
// add the list of line segments
if(this->mCurveSegments.size()>0)
{
node.addChild(this->mCurveSegments.toXML());
end=false;
}
if(end==true) node.setEnd();
return node;
}
/**
* Creates an XMLNode object from this.
*/
XMLNode GraphicalObject::toXML() const
{
XMLNamespaces xmlns = XMLNamespaces();
XMLTriple triple = XMLTriple("graphicalObject", "", "");
XMLAttributes att = XMLAttributes();
// add the SBase Ids
addSBaseAttributes(*this,att);
addGraphicalObjectAttributes(*this,att);
XMLToken token = XMLToken(triple, att, xmlns);
XMLNode node(token);
// add the notes and annotations
if(this->mNotes) node.addChild(*this->mNotes);
if(this->mAnnotation) node.addChild(*this->mAnnotation);
// write the bounding box
node.addChild(this->mBoundingBox.toXML());
return node;
}
/**
* Creates an XMLNode object from this.
*/
XMLNode LineSegment::toXML() const
{
XMLNamespaces xmlns = XMLNamespaces();
XMLTriple triple = XMLTriple("curveSegment", "", "");
XMLAttributes att = XMLAttributes();
// add the SBase Ids
addSBaseAttributes(*this,att);
att.add("type","LineSegment","http://www.w3.org/2001/XMLSchema-instance","xsi");
XMLToken token = XMLToken(triple, att, xmlns);
XMLNode node(token);
// add the notes and annotations
if(this->mNotes) node.addChild(*this->mNotes);
if(this->mAnnotation) node.addChild(*this->mAnnotation);
// add start point
node.addChild(this->mStartPoint.toXML("start"));
// add end point
node.addChild(this->mEndPoint.toXML("end"));
return node;
}
/**
* Creates an XMLNode object from this.
*/
XMLNode TextGlyph::toXML() const
{
XMLNamespaces xmlns = XMLNamespaces();
XMLTriple triple = XMLTriple("textGlyph", "", "");
XMLAttributes att = XMLAttributes();
// add the SBase Ids
addSBaseAttributes(*this,att);
addGraphicalObjectAttributes(*this,att);
if(this->isSetText()) att.add("text",this->mText);
if(this->isSetGraphicalObjectId()) att.add("graphicalObject",this->mGraphicalObject);
if(this->isSetOriginOfTextId()) att.add("originOfText",this->mOriginOfText);
XMLToken token = XMLToken(triple, att, xmlns);
XMLNode node(token);
// add the notes and annotations
if(this->mNotes) node.addChild(*this->mNotes);
if(this->mAnnotation) node.addChild(*this->mAnnotation);
// write the bounding box
node.addChild(this->mBoundingBox.toXML());
return node;
}
/**
* Creates an XMLNode object from this.
*/
XMLNode Point::toXML(const std::string& name) const
{
XMLNamespaces xmlns = XMLNamespaces();
XMLTriple triple = XMLTriple(name, "", "");
XMLAttributes att = XMLAttributes();
// add the SBase Ids
addSBaseAttributes(*this,att);
std::ostringstream os;
os << this->mXOffset;
att.add("x",os.str());
os.str("");
os << this->mYOffset;
att.add("y",os.str());
if(this->mZOffset!=0.0)
{
os.str("");
os << this->mZOffset;
att.add("z",os.str());
}
XMLToken token = XMLToken(triple, att, xmlns);
XMLNode node(token);
// add the notes and annotations
bool end=true;
if(this->mNotes)
{
node.addChild(*this->mNotes);
end=false;
}
if(this->mAnnotation)
{
node.addChild(*this->mAnnotation);
end=false;
}
if(end==true) node.setEnd();
return node;
}
