Beispiel #1
0
trieNode nextRevTrie(revtrie T, trieNode i)
 { 
    uint *data = T->data; 
    i++; 
    while (bitget1(data,i)) i++;
    return i;
 }
Beispiel #2
0
trieNode childLZTrie(lztrie T, trieNode i, byte c)
 { 
    trieNode j;
    byte tc, *letters;
    bitmap bdata;
    parentheses pdata;
#ifdef QUERYREPORT
    CALLS++;
#endif
    if (i == ROOT) return T->boost[c];
    j = i+1;
    letters = T->letters;
    bdata = T->pdata->bdata;
    pdata = T->pdata;
    while (!bitget1(T->data,j)) { // there is a child here
       tc = letters[j-rank(bdata,j)];
       // shortcut for leftrankLZTrie: is a child by letter c?
       if (tc > c) break;
       if (tc == c) return j;
       j = findclose(pdata,j)+1;
#ifdef QUERYREPORT
       JUMPS++;
#endif
    }
    return NULLT; // no child to go down by c
 }
Beispiel #3
0
trieNode nextLZTrie (lztrie T, trieNode i, uint *depth)

   { uint *data = T->data;
     i++;
     while (bitget1(data,i)) { i++; (*depth)--; }
     (*depth)++;
     return i;
   }
Beispiel #4
0
trieNode childRevTrie(revtrie T, trieNode i, uint depth, byte c, 
                      trieNode *lzl, trieNode *lzr)
 { 
    trieNode j;
    trieNode jlz;
    uint d,pos,jid;
    byte tc; uint *data;
    lztrie LZT = T->trie;
#ifdef QUERYREPORT
    BCALLS++;
#endif
    j = i+1;
#ifdef QUERYREPORT
    DEPTH1 += depth;
#endif
    data = T->data;
    while (!bitget1(data,j)) { // there is a child here
       pos = leftrankRevTrie(T,j); 
       jid = rthRevTrie(T,pos); // leftmost id in subtree
       jlz = NODE(LZT,jid);
       for (d=depth;d;d--) jlz = parentLZTrie(LZT,jlz);
#ifdef QUERYREPORT
       RJUMPS++;
       DEPTH += depth;
#endif
       tc = letterLZTrie(LZT,jlz);
       if (tc > c) break;
       if (tc == c) {
          *lzl = jlz; 
          if ((pos < T->n-1) && (rthRevTrie(T,pos+1)==jid)
	  /*(isemptyRevTrie(T,j))*/) { // empty
             pos = rightrankRevTrie(T,j); 
             jlz = NODE(LZT,rthRevTrie(T,pos)); // rightmost
             for (d=depth;d;d--) jlz = parentLZTrie(LZT,jlz);
             *lzr = jlz;
          }
          else *lzr = NULLT;
          return j; 
       }
       j = findclose(T->pdata,j)+1;
    }
    *lzl = *lzr = NULLT;
    return NULLT; // no child to go down by c
 }
Beispiel #5
0
trieNode childRevTrie(revtrie T, trieNode i, uint depth, byte c, 
                      trieNode *lzl, trieNode *lzr)
 { 
    trieNode j;
    trieNode jlz;
    uint d,pos,jid;
    byte tc;
#ifdef QUERYREPORT
    BCALLS++;
#endif
    j = i+1;
#ifdef QUERYREPORT
    DEPTH1 += depth;
#endif
    while (!bitget1(T->data,j)) { // there is a child here
       pos = leftrankRevTrie(T,j); 
       jlz = mapto(T->Rev, getposRevTrie(T,pos));
       for (d=depth;d;d--) jlz = parentLZTrie(T->trie,jlz);
#ifdef QUERYREPORT
       RJUMPS++;
       DEPTH += depth;
#endif
       tc = letterLZTrie(T->trie,jlz);
       if (tc > c) break;
       if (tc == c) {
          *lzl = jlz; 
          if ((pos < T->n-1) && //(rthRevTrie(T,pos+1)==jid)
	  (isemptyRevTrie(T,j))) { // empty
             pos = rightrankRevTrie(T,j); 
             jlz = mapto(T->Rev, getposRevTrie(T,pos));
             for (d=depth;d;d--) jlz = parentLZTrie(T->trie,jlz);
             *lzr = jlz;
          }
          else *lzr = NULLT;
          return j; 
       }
       j = findclose(T->pdata,j)+1;
    }
    *lzl = *lzr = NULLT;
    return NULLT; // no child to go down by c
 }
Beispiel #6
0
bool isemptyRevTrie(revtrie T, trieNode i)
 {
    return !bitget1(T->B->data, leftrankRevTrie(T,i));
 }
Beispiel #7
0
perm createPerm(uint *elems, uint nelems, uint t)
 {
    perm P;
    uint *b, *baux, nextelem, i, j, bptr, 
         aux, antbptr,nbwdptrs, elem,nbits, firstelem, cyclesize;
    auxbwd *auxbwdptr;

    P = malloc(sizeof(struct sperm));
    P->elems  = elems;
    P->nelems = nelems;
    nbits = P->nbits  = bits(nelems-1);
    P->t = t;
    if (t==1) {
       P->bwdptrs = malloc((((unsigned long long)nelems*nbits+W-1)/W)*sizeof(uint));
       P->nbwdptrs = nelems;
       for (i=0; i<nelems; i++)
          bitput(P->bwdptrs, bitget(elems, i*nbits, nbits)*nbits, nbits, i);
       P->bmap = NULL;  
    }
    else {
       auxbwdptr = malloc(sizeof(auxbwd)*(t+((int)ceil((double)nelems/t))));
       b = calloc(((nelems+W-1)/W), sizeof(uint));
       baux = calloc(((nelems+W-1)/W), sizeof(uint));
       nbwdptrs = 0; 
       for (i = 0; i < nelems; i++) {
          if (bitget1(baux,i) == 0) {
             nextelem = j = bptr = antbptr = i; 
             aux = 0;
             bitset(baux, j);
             cyclesize = 0;
             firstelem = j;
             while ((elem=bitget(elems,j*nbits,nbits)) != nextelem) {
                j = elem;
                bitset(baux, j);
                aux++;
                if (aux >= t) {
                   auxbwdptr[nbwdptrs].key = j;
                   auxbwdptr[nbwdptrs++].pointer = bptr;
                   antbptr = bptr;
                   bptr    = j;
                   aux     = 0;
                   bitset(b, j);
                }
                cyclesize++;
             }
             if (cyclesize >= t) {
                auxbwdptr[nbwdptrs].key = nextelem;
                auxbwdptr[nbwdptrs++].pointer = bptr;
                bitset(b, nextelem);
             }
          }
       }
       qsort(auxbwdptr, nbwdptrs, sizeof(auxbwd), &compare);
       aux = ((unsigned long long)nbwdptrs*P->nbits+W-1)/W;
       P->bwdptrs = malloc(sizeof(uint)*aux); 
       P->nbwdptrs = nbwdptrs;
       for (i = 0; i < nbwdptrs; i++) 
          bitput(P->bwdptrs, i*nbits, nbits, auxbwdptr[i].pointer); 
       P->bmap = createBitmap(b, nelems, false);
       free(baux);
       free(auxbwdptr);
    }
#ifdef QUERYREPORT
    P->cont_invperm = 0;
    P->cont_perm = 0;
#endif    
    return P;
 }