/*
* Class: eu_vandertil_jerasure_jni_Cauchy
* Method: cauchy_original_coding_matrix
* Signature: (III)[I
*/
JNIEXPORT jintArray JNICALL Java_eu_vandertil_jerasure_jni_Cauchy_cauchy_1original_1coding_1matrix
(JNIEnv *env, jclass clazz, jint k, jint m, jint w)
{
bool outOfMemory = false;
jintArray result = NULL;
if (!(w < 31 && (k+m) > (1 << w))) { // from implementation.
int* matrix = cauchy_original_coding_matrix(k, m, w);
if(matrix != NULL) {
result = env->NewIntArray(k*m);
if(result != NULL) {
env->SetIntArrayRegion(result, 0, k*m, (jint*)matrix);
} else {
outOfMemory = true;
}
} else {
outOfMemory = true;
}
free(matrix);
} else {
throwIllegalArgumentException(env, "w < 31 && (k+m) > (1 << w)");
}
if(outOfMemory) {
throwOutOfMemoryError(env, "Not enough free memory to complete");
}
return result;
}
int main (int argc, char **argv) {
FILE *fp, *fp2; // file pointers
char *block; // padding file
int size, newsize; // size of file and temp size
struct stat status; // finding file size
enum Coding_Technique tech; // coding technique (parameter)
int k, m, w, packetsize; // parameters
int buffersize; // paramter
int i; // loop control variables
int blocksize; // size of k+m files
int total;
int extra;
/* Jerasure Arguments */
char **data;
char **coding;
int *matrix;
int *bitmatrix;
int **schedule;
/* Creation of file name variables */
char temp[5];
char *s1, *s2, *extension;
char *fname;
int md;
char *curdir;
/* Timing variables */
struct timing t1, t2, t3, t4;
double tsec;
double totalsec;
struct timing start;
/* Find buffersize */
int up, down;
signal(SIGQUIT, ctrl_bs_handler);
/* Start timing */
timing_set(&t1);
totalsec = 0.0;
matrix = NULL;
bitmatrix = NULL;
schedule = NULL;
/* Error check Arguments*/
if (argc != 8) {
fprintf(stderr, "usage: inputfile k m coding_technique w packetsize buffersize\n");
fprintf(stderr, "\nChoose one of the following coding techniques: \nreed_sol_van, \nreed_sol_r6_op, \ncauchy_orig, \ncauchy_good, \nliberation, \nblaum_roth, \nliber8tion");
fprintf(stderr, "\n\nPacketsize is ignored for the reed_sol's");
fprintf(stderr, "\nBuffersize of 0 means the buffersize is chosen automatically.\n");
fprintf(stderr, "\nIf you just want to test speed, use an inputfile of \"-number\" where number is the size of the fake file you want to test.\n\n");
exit(0);
}
/* Conversion of parameters and error checking */
if (sscanf(argv[2], "%d", &k) == 0 || k <= 0) {
fprintf(stderr, "Invalid value for k\n");
exit(0);
}
if (sscanf(argv[3], "%d", &m) == 0 || m < 0) {
fprintf(stderr, "Invalid value for m\n");
exit(0);
}
if (sscanf(argv[5],"%d", &w) == 0 || w <= 0) {
fprintf(stderr, "Invalid value for w.\n");
exit(0);
}
if (argc == 6) {
packetsize = 0;
}
else {
if (sscanf(argv[6], "%d", &packetsize) == 0 || packetsize < 0) {
fprintf(stderr, "Invalid value for packetsize.\n");
exit(0);
}
}
if (argc != 8) {
buffersize = 0;
}
else {
if (sscanf(argv[7], "%d", &buffersize) == 0 || buffersize < 0) {
fprintf(stderr, "Invalid value for buffersize\n");
exit(0);
}
}
/* Determine proper buffersize by finding the closest valid buffersize to the input value */
if (buffersize != 0) {
if (packetsize != 0 && buffersize%(sizeof(long)*w*k*packetsize) != 0) {
up = buffersize;
down = buffersize;
while (up%(sizeof(long)*w*k*packetsize) != 0 && (down%(sizeof(long)*w*k*packetsize) != 0)) {
up++;
if (down == 0) {
down--;
}
}
if (up%(sizeof(long)*w*k*packetsize) == 0) {
buffersize = up;
}
else {
if (down != 0) {
buffersize = down;
}
}
}
else if (packetsize == 0 && buffersize%(sizeof(long)*w*k) != 0) {
up = buffersize;
down = buffersize;
while (up%(sizeof(long)*w*k) != 0 && down%(sizeof(long)*w*k) != 0) {
up++;
down--;
}
if (up%(sizeof(long)*w*k) == 0) {
buffersize = up;
}
else {
buffersize = down;
}
}
}
/* Setting of coding technique and error checking */
if (strcmp(argv[4], "no_coding") == 0) {
tech = No_Coding;
}
else if (strcmp(argv[4], "reed_sol_van") == 0) {
tech = Reed_Sol_Van;
if (w != 8 && w != 16 && w != 32) {
fprintf(stderr, "w must be one of {8, 16, 32}\n");
exit(0);
}
}
else if (strcmp(argv[4], "reed_sol_r6_op") == 0) {
if (m != 2) {
fprintf(stderr, "m must be equal to 2\n");
exit(0);
}
if (w != 8 && w != 16 && w != 32) {
fprintf(stderr, "w must be one of {8, 16, 32}\n");
exit(0);
}
tech = Reed_Sol_R6_Op;
}
else if (strcmp(argv[4], "cauchy_orig") == 0) {
tech = Cauchy_Orig;
if (packetsize == 0) {
fprintf(stderr, "Must include packetsize.\n");
exit(0);
}
}
else if (strcmp(argv[4], "cauchy_good") == 0) {
tech = Cauchy_Good;
if (packetsize == 0) {
fprintf(stderr, "Must include packetsize.\n");
exit(0);
}
}
else if (strcmp(argv[4], "liberation") == 0) {
if (k > w) {
fprintf(stderr, "k must be less than or equal to w\n");
exit(0);
}
if (w <= 2 || !(w%2) || !is_prime(w)) {
fprintf(stderr, "w must be greater than two and w must be prime\n");
exit(0);
}
if (packetsize == 0) {
fprintf(stderr, "Must include packetsize.\n");
exit(0);
}
if ((packetsize%(sizeof(long))) != 0) {
fprintf(stderr, "packetsize must be a multiple of sizeof(long)\n");
exit(0);
}
tech = Liberation;
}
else if (strcmp(argv[4], "blaum_roth") == 0) {
if (k > w) {
fprintf(stderr, "k must be less than or equal to w\n");
exit(0);
}
if (w <= 2 || !((w+1)%2) || !is_prime(w+1)) {
fprintf(stderr, "w must be greater than two and w+1 must be prime\n");
exit(0);
}
if (packetsize == 0) {
fprintf(stderr, "Must include packetsize.\n");
exit(0);
}
if ((packetsize%(sizeof(long))) != 0) {
fprintf(stderr, "packetsize must be a multiple of sizeof(long)\n");
exit(0);
}
tech = Blaum_Roth;
}
else if (strcmp(argv[4], "liber8tion") == 0) {
if (packetsize == 0) {
fprintf(stderr, "Must include packetsize\n");
exit(0);
}
if (w != 8) {
fprintf(stderr, "w must equal 8\n");
exit(0);
}
if (m != 2) {
fprintf(stderr, "m must equal 2\n");
exit(0);
}
if (k > w) {
fprintf(stderr, "k must be less than or equal to w\n");
exit(0);
}
tech = Liber8tion;
}
else {
fprintf(stderr, "Not a valid coding technique. Choose one of the following: reed_sol_van, reed_sol_r6_op, cauchy_orig, cauchy_good, liberation, blaum_roth, liber8tion, no_coding\n");
exit(0);
}
/* Set global variable method for signal handler */
method = tech;
/* Get current working directory for construction of file names */
curdir = (char*)malloc(sizeof(char)*1000);
if (! getcwd(curdir, 1000)) {
curdir[0] = 0;
}
if (argv[1][0] != '-') {
/* Open file and error check */
fp = fopen(argv[1], "rb");
if (fp == NULL) {
fprintf(stderr, "Unable to open file.\n");
exit(0);
}
/* Create Coding directory */
i = mkdir("Coding", S_IRWXU);
if (i == -1 && errno != EEXIST) {
fprintf(stderr, "Unable to create Coding directory.\n");
exit(0);
}
/* Determine original size of file */
stat(argv[1], &status);
size = status.st_size;
} else {
if (sscanf(argv[1]+1, "%d", &size) != 1 || size <= 0) {
fprintf(stderr, "Files starting with '-' should be sizes for randomly created input\n");
exit(1);
}
fp = NULL;
MOA_Seed(time(0));
}
newsize = size;
/* Find new size by determining next closest multiple */
if (packetsize != 0) {
if (size%(k*w*packetsize*sizeof(long)) != 0) {
while (newsize%(k*w*packetsize*sizeof(long)) != 0)
newsize++;
}
}
else {
if (size%(k*w*sizeof(long)) != 0) {
while (newsize%(k*w*sizeof(long)) != 0)
newsize++;
}
}
if (buffersize != 0) {
while (newsize%buffersize != 0) {
newsize++;
}
}
/* Determine size of k+m files */
blocksize = newsize/k;
/* Allow for buffersize and determine number of read-ins */
if (size > buffersize && buffersize != 0) {
if (newsize%buffersize != 0) {
readins = newsize/buffersize;
}
else {
readins = newsize/buffersize;
}
block = (char *)malloc(sizeof(char)*buffersize);
blocksize = buffersize/k;
}
else {
readins = 1;
buffersize = size;
block = (char *)malloc(sizeof(char)*newsize);
}
/* Break inputfile name into the filename and extension */
s1 = (char*)malloc(sizeof(char)*(strlen(argv[1])+20));
s2 = strrchr(argv[1], '/');
if (s2 != NULL) {
s2++;
strcpy(s1, s2);
}
else {
strcpy(s1, argv[1]);
}
s2 = strchr(s1, '.');
if (s2 != NULL) {
extension = strdup(s2);
*s2 = '\0';
} else {
extension = strdup("");
}
/* Allocate for full file name */
fname = (char*)malloc(sizeof(char)*(strlen(argv[1])+strlen(curdir)+20));
sprintf(temp, "%d", k);
md = strlen(temp);
/* Allocate data and coding */
data = (char **)malloc(sizeof(char*)*k);
coding = (char **)malloc(sizeof(char*)*m);
for (i = 0; i < m; i++) {
coding[i] = (char *)malloc(sizeof(char)*blocksize);
if (coding[i] == NULL) { perror("malloc"); exit(1); }
}
/* Create coding matrix or bitmatrix and schedule */
timing_set(&t3);
switch(tech) {
case No_Coding:
break;
case Reed_Sol_Van:
matrix = reed_sol_vandermonde_coding_matrix(k, m, w);
break;
case Reed_Sol_R6_Op:
break;
case Cauchy_Orig:
matrix = cauchy_original_coding_matrix(k, m, w);
bitmatrix = jerasure_matrix_to_bitmatrix(k, m, w, matrix);
schedule = jerasure_smart_bitmatrix_to_schedule(k, m, w, bitmatrix);
break;
case Cauchy_Good:
matrix = cauchy_good_general_coding_matrix(k, m, w);
bitmatrix = jerasure_matrix_to_bitmatrix(k, m, w, matrix);
schedule = jerasure_smart_bitmatrix_to_schedule(k, m, w, bitmatrix);
break;
case Liberation:
bitmatrix = liberation_coding_bitmatrix(k, w);
schedule = jerasure_smart_bitmatrix_to_schedule(k, m, w, bitmatrix);
break;
case Blaum_Roth:
bitmatrix = blaum_roth_coding_bitmatrix(k, w);
schedule = jerasure_smart_bitmatrix_to_schedule(k, m, w, bitmatrix);
break;
case Liber8tion:
bitmatrix = liber8tion_coding_bitmatrix(k);
schedule = jerasure_smart_bitmatrix_to_schedule(k, m, w, bitmatrix);
break;
case RDP:
case EVENODD:
assert(0);
}
timing_set(&start);
timing_set(&t4);
totalsec += timing_delta(&t3, &t4);
/* Read in data until finished */
n = 1;
total = 0;
while (n <= readins) {
/* Check if padding is needed, if so, add appropriate
number of zeros */
if (total < size && total+buffersize <= size) {
total += jfread(block, sizeof(char), buffersize, fp);
}
else if (total < size && total+buffersize > size) {
extra = jfread(block, sizeof(char), buffersize, fp);
for (i = extra; i < buffersize; i++) {
block[i] = '0';
}
}
else if (total == size) {
for (i = 0; i < buffersize; i++) {
block[i] = '0';
}
}
/* Set pointers to point to file data */
for (i = 0; i < k; i++) {
data[i] = block+(i*blocksize);
}
timing_set(&t3);
/* Encode according to coding method */
switch(tech) {
case No_Coding:
break;
case Reed_Sol_Van:
jerasure_matrix_encode(k, m, w, matrix, data, coding, blocksize);
break;
case Reed_Sol_R6_Op:
reed_sol_r6_encode(k, w, data, coding, blocksize);
break;
case Cauchy_Orig:
jerasure_schedule_encode(k, m, w, schedule, data, coding, blocksize, packetsize);
break;
case Cauchy_Good:
jerasure_schedule_encode(k, m, w, schedule, data, coding, blocksize, packetsize);
break;
case Liberation:
jerasure_schedule_encode(k, m, w, schedule, data, coding, blocksize, packetsize);
break;
case Blaum_Roth:
jerasure_schedule_encode(k, m, w, schedule, data, coding, blocksize, packetsize);
break;
case Liber8tion:
jerasure_schedule_encode(k, m, w, schedule, data, coding, blocksize, packetsize);
break;
case RDP:
case EVENODD:
assert(0);
}
timing_set(&t4);
/* Write data and encoded data to k+m files */
for (i = 1; i <= k; i++) {
if (fp == NULL) {
bzero(data[i-1], blocksize);
} else {
sprintf(fname, "%s/Coding/%s_k%0*d%s", curdir, s1, md, i, extension);
if (n == 1) {
fp2 = fopen(fname, "wb");
}
else {
fp2 = fopen(fname, "ab");
}
fwrite(data[i-1], sizeof(char), blocksize, fp2);
fclose(fp2);
}
}
for (i = 1; i <= m; i++) {
if (fp == NULL) {
bzero(data[i-1], blocksize);
} else {
sprintf(fname, "%s/Coding/%s_m%0*d%s", curdir, s1, md, i, extension);
if (n == 1) {
fp2 = fopen(fname, "wb");
}
else {
fp2 = fopen(fname, "ab");
}
fwrite(coding[i-1], sizeof(char), blocksize, fp2);
fclose(fp2);
}
}
n++;
/* Calculate encoding time */
totalsec += timing_delta(&t3, &t4);
}
/* Create metadata file */
if (fp != NULL) {
sprintf(fname, "%s/Coding/%s_meta.txt", curdir, s1);
fp2 = fopen(fname, "wb");
fprintf(fp2, "%s\n", argv[1]);
fprintf(fp2, "%d\n", size);
fprintf(fp2, "%d %d %d %d %d\n", k, m, w, packetsize, buffersize);
fprintf(fp2, "%s\n", argv[4]);
fprintf(fp2, "%d\n", tech);
fprintf(fp2, "%d\n", readins);
fclose(fp2);
}
/* Free allocated memory */
free(s1);
free(fname);
free(block);
free(curdir);
/* Calculate rate in MB/sec and print */
timing_set(&t2);
tsec = timing_delta(&t1, &t2);
printf("Encoding (MB/sec): %0.10f\n", (((double) size)/1024.0/1024.0)/totalsec);
printf("En_Total (MB/sec): %0.10f\n", (((double) size)/1024.0/1024.0)/tsec);
return 0;
}
int main (int argc, char **argv) {
FILE *fp; // File pointer
char *dummy;
int err;
/* Jerasure arguments */
char **data;
char **coding;
int *erasures;
int *erased;
int *matrix;
int *bitmatrix;
/* Parameters */
int k, m, w, packetsize, buffersize;
enum Coding_Technique tech;
char *c_tech;
int i, j; // loop control variables
int blocksize; // size of individual files
int origsize; // size of file before padding
int total; // used to write data, not padding to file
struct stat status; // used to find size of individual files
int numerased; // number of erased files
/* Used to recreate file names */
char *temp;
char *cs1, *cs2, *extension;
char *fname;
int md;
char *curdir;
/* Used to time decoding */
struct timeval t1, t2, t3, t4;
struct timezone tz;
double tsec;
double totalsec;
signal(SIGQUIT, ctrl_bs_handler);
matrix = NULL;
bitmatrix = NULL;
totalsec = 0.0;
blocksize = -1;
/* Start timing */
gettimeofday(&t1, &tz);
/* Error checking parameters */
if (argc != 2) {
fprintf(stderr, "usage: inputfile\n");
exit(0);
}
curdir = (char *)malloc(sizeof(char)*100);
dummy = getcwd(curdir, 100);
/* Begin recreation of file names */
cs1 = (char*)malloc(sizeof(char)*strlen(argv[1]));
cs2 = strrchr(argv[1], '/');
if (cs2 != NULL) {
cs2++;
strcpy(cs1, cs2);
}
else {
strcpy(cs1, argv[1]);
}
cs2 = strchr(cs1, '.');
if (cs2 != NULL) {
extension = strdup(cs2);
*cs2 = '\0';
} else {
extension = strdup("");
}
fname = (char *)malloc(sizeof(char*)*(100+strlen(argv[1])+10));
/* Read in parameters from metadata file */
sprintf(fname, "%s/Coding/%s_meta.txt", curdir, cs1);
fp = fopen(fname, "rb");
if (fp == NULL) {
fprintf(stderr, "Error: no metadata file %s\n", fname);
exit(1);
}
temp = (char *)malloc(sizeof(char)*(strlen(argv[1])+10));
err = fscanf(fp, "%s", temp);
if (fscanf(fp, "%d", &origsize) != 1) {
fprintf(stderr, "Original size is not valid\n");
exit(0);
}
if (fscanf(fp, "%d %d %d %d %d", &k, &m, &w, &packetsize, &buffersize) != 5) {
fprintf(stderr, "Parameters are not correct\n");
exit(0);
}
c_tech = (char *)malloc(sizeof(char)*(strlen(argv[1])+10));
err = fscanf(fp, "%s", c_tech);
err = fscanf(fp, "%d", &tech);
method = tech;
err = fscanf(fp, "%d", &readins);
fclose(fp);
/* Allocate memory */
erased = (int *)malloc(sizeof(int)*(k+m));
for (i = 0; i < k+m; i++)
erased[i] = 0;
erasures = (int *)malloc(sizeof(int)*(k+m));
data = (char **)malloc(sizeof(char *)*k);
coding = (char **)malloc(sizeof(char *)*m);
if (buffersize != origsize) {
for (i = 0; i < k; i++) {
data[i] = (char *)malloc(sizeof(char)*(buffersize/k));
}
for (i = 0; i < m; i++) {
coding[i] = (char *)malloc(sizeof(char)*(buffersize/k));
}
blocksize = buffersize/k;
}
sprintf(temp, "%d", k);
md = strlen(temp);
gettimeofday(&t3, &tz);
/* Create coding matrix or bitmatrix */
switch(tech) {
case No_Coding:
case RDP:
case EVENODD:
break;
case Reed_Sol_Van:
matrix = reed_sol_vandermonde_coding_matrix(k, m, w);
break;
case Reed_Sol_R6_Op:
matrix = reed_sol_r6_coding_matrix(k, w);
break;
case Cauchy_Orig:
matrix = cauchy_original_coding_matrix(k, m, w);
bitmatrix = jerasure_matrix_to_bitmatrix(k, m, w, matrix);
break;
case Cauchy_Good:
matrix = cauchy_good_general_coding_matrix(k, m, w);
bitmatrix = jerasure_matrix_to_bitmatrix(k, m, w, matrix);
break;
case Liberation:
bitmatrix = liberation_coding_bitmatrix(k, w);
break;
case Blaum_Roth:
bitmatrix = blaum_roth_coding_bitmatrix(k, w);
break;
case Liber8tion:
bitmatrix = liber8tion_coding_bitmatrix(k);
break;
default:
fprintf(stderr, "unsupported coding technique used\n");
break;
}
gettimeofday(&t4, &tz);
tsec = 0.0;
tsec += t4.tv_usec;
tsec -= t3.tv_usec;
tsec /= 1000000.0;
tsec += t4.tv_sec;
tsec -= t3.tv_sec;
totalsec += tsec;
/* Begin decoding process */
total = 0;
n = 1;
while (n <= readins) {
numerased = 0;
/* Open files, check for erasures, read in data/coding */
for (i = 1; i <= k; i++) {
sprintf(fname, "%s/Coding/%s_k%0*d%s", curdir, cs1, md, i, extension);
fp = fopen(fname, "rb");
if (fp == NULL) {
erased[i-1] = 1;
erasures[numerased] = i-1;
numerased++;
//printf("%s failed\n", fname);
}
else {
if (buffersize == origsize) {
stat(fname, &status);
blocksize = status.st_size;
data[i-1] = (char *)malloc(sizeof(char)*blocksize);
err = fread(data[i-1], sizeof(char), blocksize, fp);
}
else {
fseek(fp, blocksize*(n-1), SEEK_SET);
err = fread(data[i-1], sizeof(char), buffersize/k, fp);
}
fclose(fp);
}
}
for (i = 1; i <= m; i++) {
sprintf(fname, "%s/Coding/%s_m%0*d%s", curdir, cs1, md, i, extension);
fp = fopen(fname, "rb");
if (fp == NULL) {
erased[k+(i-1)] = 1;
erasures[numerased] = k+i-1;
numerased++;
//printf("%s failed\n", fname);
}
else {
if (buffersize == origsize) {
stat(fname, &status);
blocksize = status.st_size;
coding[i-1] = (char *)malloc(sizeof(char)*blocksize);
err = fread(coding[i-1], sizeof(char), blocksize, fp);
}
else {
fseek(fp, blocksize*(n-1), SEEK_SET);
err = fread(coding[i-1], sizeof(char), blocksize, fp);
}
fclose(fp);
}
}
/* Finish allocating data/coding if needed */
if (n == 1) {
for (i = 0; i < numerased; i++) {
if (erasures[i] < k) {
data[erasures[i]] = (char *)malloc(sizeof(char)*blocksize);
}
else {
coding[erasures[i]-k] = (char *)malloc(sizeof(char)*blocksize);
}
}
}
erasures[numerased] = -1;
gettimeofday(&t3, &tz);
/* Choose proper decoding method */
if (tech == Reed_Sol_Van || tech == Reed_Sol_R6_Op) {
i = jerasure_matrix_decode(k, m, w, matrix, 1, erasures, data, coding, blocksize);
}
else if (tech == Cauchy_Orig || tech == Cauchy_Good || tech == Liberation || tech == Blaum_Roth || tech == Liber8tion) {
i = jerasure_schedule_decode_lazy(k, m, w, bitmatrix, erasures, data, coding, blocksize, packetsize, 1);
}
else {
fprintf(stderr, "Not a valid coding technique.\n");
exit(0);
}
gettimeofday(&t4, &tz);
/* Exit if decoding was unsuccessful */
if (i == -1) {
fprintf(stderr, "Unsuccessful!\n");
exit(0);
}
/* Create decoded file */
sprintf(fname, "%s/Coding/%s_decoded%s", curdir, cs1, extension);
if (n == 1) {
fp = fopen(fname, "wb");
}
else {
fp = fopen(fname, "ab");
}
for (i = 0; i < k; i++) {
if (total+blocksize <= origsize) {
fwrite(data[i], sizeof(char), blocksize, fp);
total+= blocksize;
}
else {
for (j = 0; j < blocksize; j++) {
if (total < origsize) {
fprintf(fp, "%c", data[i][j]);
total++;
}
else {
break;
}
}
}
}
n++;
fclose(fp);
tsec = 0.0;
tsec += t4.tv_usec;
tsec -= t3.tv_usec;
tsec /= 1000000.0;
tsec += t4.tv_sec;
tsec -= t3.tv_sec;
totalsec += tsec;
}
/* Free allocated memory */
free(cs1);
free(extension);
free(fname);
free(data);
free(coding);
free(erasures);
free(erased);
/* Stop timing and print time */
gettimeofday(&t2, &tz);
tsec = 0;
tsec += t2.tv_usec;
tsec -= t1.tv_usec;
tsec /= 1000000.0;
tsec += t2.tv_sec;
tsec -= t1.tv_sec;
printf("Decoding (MB/sec): %0.10f\n", (origsize/1024/1024)/totalsec);
printf("De_Total (MB/sec): %0.10f\n\n", (origsize/1024/1024)/tsec);
return(0);
}