void
SetupMeshCompleteAction::act()
{
if (!_mesh)
mooseError("No mesh file was supplied and no generation block was provided");
if (_current_task == "execute_mesh_modifiers")
{
_app.executeMeshModifiers();
}
else if (_current_task == "uniform_refine_mesh")
{
/**
* If possible we'd like to refine the mesh here before the equation systems
* are setup to avoid doing expensive projections. If however we are doing a
* file based restart and we need uniform refinements, we'll have to postpone
* those refinements until after the solution has been read in.
*/
if (_app.setFileRestart() == false && _app.isRecovering() == false)
{
Adaptivity::uniformRefine(_mesh.get());
if (_displaced_mesh)
Adaptivity::uniformRefine(_displaced_mesh.get());
}
}
else
{
// Prepare the mesh (may occur multiple times)
completeSetup(_mesh.get());
if (_displaced_mesh)
completeSetup(_displaced_mesh.get());
}
}
StoreCentralAtomsVessel::StoreCentralAtomsVessel( const vesselbase::VesselOptions& da ):
StoreDataVessel(da),
tmpdf(3)
{
mycolv=dynamic_cast<MultiColvarBase*>( getAction() );
plumed_assert( mycolv ); completeSetup( mycolv->getCentralAtomElementIndex(), 3 );
}
StoreValueAndWeightVessel::StoreValueAndWeightVessel( const VesselOptions& da):
StoreDataVessel(da)
{
completeSetup( 0, 2 );
}
