/*!
Load any saved values to the screen
*/
void CQModelValue::load()
{
if (mpModelValue == NULL) return;
// Unit expression
mpEditUnits->setText(FROM_UTF8(mpModelValue->getUnitExpression()));
// Update the unit labels
slotUnitChanged();
// Type
mpComboBoxType->setCurrentIndex(mpComboBoxType->findText(FROM_UTF8(CModelEntity::StatusName[mpModelValue->getStatus()])));
// Initial Value
mpEditInitialValue->setText(convertToQString(mpModelValue->getInitialValue()));
// Current Value
mpEditCurrentValue->setText(convertToQString(mpModelValue->getValue()));
// Rate
mpEditRate->setText(convertToQString(mpModelValue->getRate()));
// Expression
mpExpressionEMW->mpExpressionWidget->setExpression(mpModelValue->getExpression());
// Update Expression Widget
mpExpressionEMW->updateWidget();
// Initial Expression
mpInitialExpressionEMW->mpExpressionWidget->setExpression(mpModelValue->getInitialExpression());
// Update Initial Expression Widget
mpInitialExpressionEMW->updateWidget();
// Noise Expression
mpNoiseExpressionWidget->mpExpressionWidget->setExpression(mpModelValue->getNoiseExpression());
mpNoiseExpressionWidget->updateWidget();
mpBoxAddNoise->setChecked(mpModelValue->hasNoise());
// Type dependent display of values
slotTypeChanged(mpComboBoxType->currentText());
// Use Initial Expression
if (mpModelValue->getStatus() == CModelEntity::Status::ASSIGNMENT ||
mpModelValue->getInitialExpression() == "")
{
mpBoxUseInitialExpression->setChecked(false);
// slotInitialTypeChanged(false);
}
else
{
mpBoxUseInitialExpression->setChecked(true);
// slotInitialTypeChanged(true);
}
mpDependencies->loadFrom(mpObject);
mChanged = false;
}
void CQCompartment::load()
{
if (mpCompartment == NULL) return;
//Dimensionality
mpComboBoxDim->setCurrentIndex(mpCompartment->getDimensionality());
// slotDimesionalityChanged(mpCompartment->getDimensionality());
// Simulation Type
mpComboBoxType->setCurrentIndex(mpComboBoxType->findText(FROM_UTF8(CModelEntity::StatusName[mpCompartment->getStatus()])));
// Initial Volume
mpEditInitialVolume->setText(convertToQString(mpCompartment->getInitialValue()));
// Transient Volume
mpEditCurrentVolume->setText(convertToQString(mpCompartment->getValue()));
// Concentration Rate
mpEditRate->setText(convertToQString(mpCompartment->getRate()));
// Expression
mpExpressionEMW->mpExpressionWidget->setExpression(mpCompartment->getExpression());
mpExpressionEMW->updateWidget();
// Initial Expression
mpInitialExpressionEMW->mpExpressionWidget->setExpression(mpCompartment->getInitialExpression());
mpInitialExpressionEMW->updateWidget();
// Noise Expression
mpNoiseExpressionWidget->mpExpressionWidget->setExpression(mpCompartment->getNoiseExpression());
mpNoiseExpressionWidget->updateWidget();
mpBoxAddNoise->setChecked(mpCompartment->hasNoise());
// Type dependent display of values
slotTypeChanged(mpComboBoxType->currentText());
// Use Initial Expression
if (mpCompartment->getStatus() == CModelEntity::Status::ASSIGNMENT ||
mpCompartment->getInitialExpression() == "")
{
mpBoxUseInitialExpression->setChecked(false);
}
else
{
mpBoxUseInitialExpression->setChecked(true);
}
loadMetaboliteTable();
mChanged = false;
return;
}
void CScanWidgetRandom::initFromObject(const CDataObject *obj)
{
mpObject = obj;
if (obj)
{
lineEditObject->setText(FROM_UTF8(obj->getObjectDisplayName()));
if (obj->hasFlag(CDataObject::ValueDbl))
{
C_FLOAT64 value = *(C_FLOAT64*)obj->getValuePointer();
C_INT32 type = comboBoxType->currentIndex();
if (type == 0) //uniform
{
lineEditMin->setText(convertToQString(value * 0.5));
lineEditMax->setText(convertToQString(value * 2));
}
if (type == 1) //normal
{
lineEditMin->setText(convertToQString(value));
lineEditMax->setText(convertToQString(value * 0.1));
}
if (type == 2) //poisson
{
lineEditMin->setText(convertToQString(value));
lineEditMax->setText("");
}
}
}
else
{
lineEditObject->setText("");
lineEditMin->setText("");
lineEditMax->setText("");
}
}
bool InitializeEventsXMLFile(EventsFile& eventsFile)
{
bool rv = true;
osCpuid cpuInfo;
int model = cpuInfo.getModel();
osFilePath eventFilePath;
EventEngine eventEngine;
// Construct the path for family specific Events XML files
if (osGetCurrentApplicationDllsPath(eventFilePath) || osGetCurrentApplicationPath(eventFilePath))
{
eventFilePath.clearFileName();
eventFilePath.clearFileExtension();
eventFilePath.appendSubDirectory(L"Data");
eventFilePath.appendSubDirectory(L"Events");
const gtString eventFilePathStr = eventFilePath.fileDirectoryAsString();
if (!eventEngine.Initialize(convertToQString(eventFilePathStr)))
{
rv = false;
}
}
if (rv)
{
// Get event file path
QString eventFile;
eventFile = eventEngine.GetEventFilePath(cpuInfo.getFamily(), model);
// Initialize event file
if (!eventsFile.Open(eventFile))
{
rv = false;
}
}
return rv;
}
void CQCompartment::save()
{
if (mpCompartment == NULL) return;
mIgnoreUpdates = true;
CData OldData(mpCompartment->toData());
#ifdef COPASI_EXTUNIT
//Dimensionality
if ((C_INT32)mpCompartment->getDimensionality() != mpComboBoxDim->currentIndex()) //this makes assumptions about the order of entries in the combo box!
{
mpCompartment->setDimensionality((unsigned C_INT32) mpComboBoxDim->currentIndex());
mChanged = true;
}
#endif
// Type
if (mpCompartment->getStatus() != CModelEntity::StatusName.toEnum(TO_UTF8(mpComboBoxType-> currentText())))
{
mpCompartment->setStatus(CModelEntity::StatusName.toEnum(TO_UTF8(mpComboBoxType->currentText())));
mChanged = true;
}
// Initial Volume
if (convertToQString(mpCompartment->getInitialValue()) != mpEditInitialVolume->text())
{
mpCompartment->setInitialValue(mpEditInitialVolume->text().toDouble());
mChanged = true;
}
// Expression
if (mpCompartment->getExpression() != mpExpressionEMW->mpExpressionWidget->getExpression())
{
mpCompartment->setExpression(mpExpressionEMW->mpExpressionWidget->getExpression());
mChanged = true;
}
// Initial Expression
if (CModelEntity::StatusName.toEnum(TO_UTF8(mpComboBoxType-> currentText())) != CModelEntity::Status::ASSIGNMENT)
{
if (mpBoxUseInitialExpression->isChecked() &&
mpCompartment->getInitialExpression() != mpInitialExpressionEMW->mpExpressionWidget->getExpression())
{
mpCompartment->setInitialExpression(mpInitialExpressionEMW->mpExpressionWidget->getExpression());
mChanged = true;
}
else if (!mpBoxUseInitialExpression->isChecked() &&
mpCompartment->getInitialExpression() != "")
{
mpCompartment->setInitialExpression("");
mChanged = true;
}
}
// Add Noise
if (mpCompartment->hasNoise() != mpBoxAddNoise->isChecked())
{
mpCompartment->setHasNoise(mpBoxAddNoise->isChecked());
mChanged = true;
}
// Noise Expression
if (mpCompartment->getNoiseExpression() != mpNoiseExpressionWidget->mpExpressionWidget->getExpression())
{
mpCompartment->setNoiseExpression(mpNoiseExpressionWidget->mpExpressionWidget->getExpression());
mChanged = true;
}
mIgnoreUpdates = false;
if (mChanged)
{
CUndoData UndoData;
mpCompartment->createUndoData(UndoData, CUndoData::Type::CHANGE, OldData, static_cast< CCore::Framework >(mFramework));
ListViews::addUndoMetaData(this, UndoData);
slotNotifyChanges(mpDataModel->applyData(UndoData));
load();
}
}
QVariant CQCompartmentDM::data(const QModelIndex &index, int role) const
{
if (!index.isValid())
return QVariant();
if (index.row() >= rowCount())
return QVariant();
if (index.column() > 0 && role == Qt::ForegroundRole && !(flags(index) & Qt::ItemIsEditable))
return QColor(Qt::darkGray);
if (role == Qt::DisplayRole || role == Qt::EditRole)
{
if (isDefaultRow(index))
{
switch (index.column())
{
case COL_ROW_NUMBER:
return QVariant(QString(""));
case COL_NAME_COMPARTMENTS:
return QVariant(QString("New Compartment"));
case COL_TYPE_COMPARTMENTS:
return QVariant(QString(FROM_UTF8(CModelEntity::StatusName[CModelEntity::Status::FIXED])));
case COL_IVOLUME:
return QVariant(convertToQString(1.0));
default:
return QVariant(QString(""));
}
}
else
{
CCompartment & Compartment = mpCompartments->operator[](index.row());
const CExpression * pExpression = NULL;
switch (index.column())
{
case COL_ROW_NUMBER:
return QVariant(index.row() + 1);
case COL_NAME_COMPARTMENTS:
return QVariant(QString(FROM_UTF8(Compartment.getObjectName())));
case COL_TYPE_COMPARTMENTS:
return QVariant(QString(FROM_UTF8(CModelEntity::StatusName[Compartment.getStatus()])));
case COL_UNIT_COMPARTMENTS:
return QVariant(mUnits[Compartment.getDimensionality()]);
case COL_IVOLUME:
if (role == Qt::EditRole)
return QVariant(convertToQString(Compartment.getInitialValue()));
else
return QVariant(Compartment.getInitialValue());
case COL_VOLUME:
return QVariant(Compartment.getValue());
case COL_RATE_COMPARTMENTS:
return QVariant(Compartment.getRate());
case COL_IEXPRESSION_COMPARTMENTS:
{
pExpression = Compartment.getInitialExpressionPtr();
if (pExpression != NULL)
return QVariant(QString(FROM_UTF8(pExpression->getDisplayString())));
else
return QVariant();
}
case COL_EXPRESSION_COMPARTMENTS:
{
pExpression = Compartment.getExpressionPtr();
if (pExpression != NULL)
return QVariant(QString(FROM_UTF8(pExpression->getDisplayString())));
else
return QVariant();
}
case COL_NEXPRESSION_COMPARTMENTS:
{
pExpression = Compartment.getNoiseExpressionPtr();
if (Compartment.hasNoise() && pExpression != NULL)
return QVariant(QString(FROM_UTF8(pExpression->getDisplayString())));
else
return QVariant();
}
}
}
}
return QVariant();
}
/*!
Save any inputs and set them as initial setting values
*/
void CQModelValue::save()
{
if (mpModelValue == NULL) return;
mIgnoreUpdates = true;
CData OldData(mpModelValue->toData());
// set status
if (CModelEntity::StatusName[mpModelValue->getStatus()] != TO_UTF8(mpComboBoxType->currentText()))
{
mpModelValue->setStatus(CModelEntity::StatusName.toEnum(TO_UTF8(mpComboBoxType->currentText()), CModelEntity::Status::FIXED));
mChanged = true;
}
// set initial value
if (convertToQString(mpModelValue->getInitialValue()) != mpEditInitialValue->text() &&
mpModelValue->getStatus() != CModelEntity::Status::ASSIGNMENT)
{
mpModelValue->setInitialValue(mpEditInitialValue->text().toDouble());
mChanged = true;
}
// set expression
if (mpModelValue->getExpression() != mpExpressionEMW->mpExpressionWidget->getExpression())
{
mpModelValue->setExpression(mpExpressionEMW->mpExpressionWidget->getExpression());
mChanged = true;
}
// set initial expression
if (mpModelValue->getStatus() != CModelEntity::Status::ASSIGNMENT)
{
if (mpBoxUseInitialExpression->isChecked() &&
mpModelValue->getInitialExpression() != mpInitialExpressionEMW->mpExpressionWidget->getExpression())
{
mpModelValue->setInitialExpression(mpInitialExpressionEMW->mpExpressionWidget->getExpression());
mChanged = true;
}
else if (!mpBoxUseInitialExpression->isChecked() &&
mpModelValue->getInitialExpression() != "")
{
mpModelValue->setInitialExpression("");
mChanged = true;
}
}
// Add Noise
if (mpModelValue->hasNoise() != mpBoxAddNoise->isChecked())
{
mpModelValue->setHasNoise(mpBoxAddNoise->isChecked());
mChanged = true;
}
// Noise Expression
if (mpModelValue->getNoiseExpression() != mpNoiseExpressionWidget->mpExpressionWidget->getExpression())
{
mpModelValue->setNoiseExpression(mpNoiseExpressionWidget->mpExpressionWidget->getExpression());
mChanged = true;
}
// set unit
if (mpModelValue->getUnitExpression() != TO_UTF8(mpEditUnits->text()))
{
mpModelValue->setUnitExpression(TO_UTF8(mpEditUnits->text()));
mChanged = true;
}
mIgnoreUpdates = false;
if (mChanged)
{
CUndoData UndoData;
mpModelValue->createUndoData(UndoData, CUndoData::Type::CHANGE, OldData, static_cast< CCore::Framework >(mFramework));
ListViews::addUndoMetaData(this, UndoData);
slotNotifyChanges(mpDataModel->recordData(UndoData));
load();
}
mChanged = false;
}
void PaintWidget::paintEvent(QPaintEvent *)
{
if (mVector.size() == 0) return;
if (mClear) return;
int position;
int space = 35;
int maxScaleValue = -1000;
int minScaleValue = 1000;
unsigned C_INT32 j;
for (j = 0; j < mVector.size(); ++j)
{
if (fabs(mVector[j]) == std::numeric_limits<C_FLOAT64>::infinity())
continue;
if ((int)(log10(fabs(mVector[j])) + 1) > maxScaleValue)
maxScaleValue = (int)(log10(fabs(mVector[j])) + 1);
if ((int)(log10(fabs(mVector[j])) - 1) < minScaleValue)
minScaleValue = (int)(log10(fabs(mVector[j])) - 1);
}
int scaleValueRange = maxScaleValue - minScaleValue;
QPainter paint(this);
paint.save();
//paint.setWindow(0, 0, 1000, 1000);
QRect v = paint.viewport();
//paint.setFont(QFont("Courier", 15));
//Legend
paint.setPen(QPen(QColor(180, 0, 0), 5));
paint.drawLine(space, space, space, space + 10);
paint.setPen(QPen(QColor(0, 0, 0), 1));
paint.drawText(space + 5, space + 10, " - negative time scale values");
paint.setPen(QPen(QColor(0, 180, 0), 5));
paint.drawLine(space, space + 20, space, space + 30);
paint.setPen(QPen(QColor(0, 0, 0), 1));
paint.drawText(space + 5, space + 30, " - positive time scale values");
//axis
paint.setPen(QPen(QColor(100, 100, 100), 1));
int yCentre = v.bottom() - space - 30;
int scaleBegin = space;
int scaleEnd = v.right() - space; //(maxScaleValue - minScaleValue) * (1000 - 2 * space) / scaleValueRange + space;
int axisLength = scaleEnd - scaleBegin;
paint.drawLine(scaleBegin, yCentre, scaleEnd, yCentre);
//tics
C_INT32 i;
for (i = 0; i <= scaleValueRange; i++)
{
position = scaleBegin + (int)(i * axisLength / scaleValueRange);
paint.drawLine(position, yCentre + 10, position, yCentre);
paint.drawText(position - 5, yCentre + 30, QString::number(minScaleValue + i));
}
paint.setPen(QPen(QColor(0, 180, 0), 1));
//values
int yTop = yCentre - 50;
int xText = v.right() - space - 230;
int yText = space + 30;
for (j = 0; j < mVector.size(); j++)
{
position = scaleBegin + (int)((log10(fabs(mVector[j])) - minScaleValue) * axisLength / scaleValueRange);
if ((uint)mSelection == (uint)(mVector.size() - 1 - j))
{
if (mVector[j] < 0)
paint.setPen(QPen(QColor(180, 20, 20), 4));
else
paint.setPen(QPen(QColor(20, 180, 20), 4));
paint.drawLine(position, yCentre - 1, position, yTop);
paint.setPen(QPen(QColor(200, 200, 200), 1));
// paint.setFont(QFont("Courier", 20));
paint.drawLine(xText, yText, position + 1, yTop - 1);
paint.drawLine(xText, yText, scaleEnd, yText);
paint.setPen(QPen(QColor(0, 0, 0), 1));
if (mVector[j] < 0)
paint.drawText(xText + 1, yText - 15, " log10 (|" + convertToQString(mVector[j]) + "|) = " + convertToQString(log10(fabs(mVector[j]))));
else
paint.drawText(xText + 1, yText - 15, " log10 (" + convertToQString(fabs(mVector[j])) + ") = " + convertToQString(log10(fabs(mVector[j]))));
paint.drawText(scaleBegin + scaleEnd / 2 - 50, yCentre + 50, " log timescale");
}
else
{
if (mVector[j] < 0)
paint.setPen(QPen(QColor(180, 20, 20), 2));
else
paint.setPen(QPen(QColor(20, 180, 20), 2));
paint.drawLine(position, yCentre - 1, position, yTop);
}
}
paint.restore();
}
void CScanWidgetRandom::changeType()
{
C_INT32 type = comboBoxType->currentIndex();
C_FLOAT64 value = 0.0;
if (mpObject != NULL)
value = *(C_FLOAT64*)mpObject->getValuePointer();
switch (type)
{
case 0: // uniform
lineEditMin->setEnabled(true);
lineEditMax->setEnabled(true);
labelMin->setText("min");
labelMax->setText("max");
if (mpObject != NULL)
{
lineEditMin->setText(convertToQString(value * 0.5));
lineEditMax->setText(convertToQString(value * 2));
}
else
{
lineEditMin->setText("");
lineEditMax->setText("");
}
break;
case 1: // normal
lineEditMin->setEnabled(true);
lineEditMax->setEnabled(true);
labelMin->setText("mean");
labelMax->setText("standard deviation");
if (mpObject != NULL)
{
lineEditMin->setText(convertToQString(value));
lineEditMax->setText(convertToQString(value * 0.1));
}
else
{
lineEditMin->setText("");
lineEditMax->setText("");
}
break;
case 2: // Poisson
lineEditMin->setEnabled(true);
lineEditMax->setEnabled(false);
labelMin->setText("mean");
labelMax->setText("");
if (mpObject != NULL)
lineEditMin->setText(convertToQString(value));
else
lineEditMin->setText("");
lineEditMax->setText("");
break;
case 3: // Gamma
lineEditMin->setEnabled(true);
lineEditMax->setEnabled(true);
labelMin->setText("shape");
labelMax->setText("scale");
if (mpObject != NULL)
{
lineEditMin->setText(convertToQString(1.0 * value));
lineEditMax->setText(convertToQString(0.1));
}
else
{
lineEditMin->setText("");
lineEditMax->setText("");
}
break;
}
}