void main()
{
TravelingEmployee emp("Bob", 45900, 'M', 10000);
cout<<emp.getName()<<"'s transportation has accumulated "<<emp.getDistance()<<" miles."<<endl;
emp.travel(225);
cout<<emp.getName()<<"'s transportation has accumulated "<<emp.getDistance()<<" miles."<<endl;
}
int main () {
Employee emp(10,20,30);
VendorBusiness(emp,&Employee::fun1);
Employee emp1(11,21,31);
VendorBusiness(&emp,&Employee::fun2);
return 0;
}
bool out_queue(PQUEUE pq,int *val)
{
if (emp(pq))
{
printf("栈空！！\n");
return false;
}
else
{
*val=pq->front;
pq->front=(pq->front+1)%6;
return true;
}
}
TEST (test_person, person_test)
{
Person pers("BC");
EXPECT_STREQ(pers.getPosition().c_str(), "no money");
EXPECT_STREQ(pers.getEmployer().c_str(), "loser");
Employer emp("Nivis", "IT");
Position pos("programmer", "Linux programming");
EXPECT_TRUE(emp.hire(pers, pos));
EXPECT_STREQ(pers.getPosition().c_str(), "programmer");
EXPECT_STREQ(pers.getEmployer().c_str(), "Nivis");
}
void t_stl() {
std::vector<unsigned> V(1024);
//unsigned M = GaloisRuntime::LL::getMaxThreads();
std::cout << "stl:\nIterxSize\n";
std::cout << "Using " << 1 << " threads\n";
Galois::Timer t;
t.start();
for (unsigned x = 0; x < iter; ++x)
std::for_each(V.begin(), V.end(), emp());
t.stop();
std::cout << "STL(" << iter << "x" << V.size() << "): " << t.get() << "\n";
}
void main() {
Department a, b, c;
a.generate();
a.print();
b.generate();
b.print();
c.generate();
c = c + a;
c.print();
Employee emp("Sergey", 15000, 30);
a.add(emp);
try {
a.add(emp);
}
catch (std::exception &e) {
std::cout << e.what() << std::endl;
}
try {
b.remove(1);
a.remove(30);
c.remove(2);
}
catch (std::exception &e) {
std::cout << e.what() << std::endl;
}
try {
a.add("Igor", 25000, 30);
if (!(a == b)) {
a.add(*b[3]);
}
a.print();
}
catch (std::exception &e) {
std::cout << e.what() << std::endl;
}
std::cout <<"\n Count:"<< a.get_сount() << std::endl;
system("pause");
}
int main(){
// Person *pers = new Person(std::string("Harald"));
// std::cout << pers->getInfo()<<std::endl;
// printPersonInfo(pers);
// delete pers;
// std::cout<<"---------------"<<std::endl;
// Student *stud=new Student(std::string("Bernd"), std::string("1234"));
// std::cout<<stud->getInfo()<<std::endl;
// printPersonInfo(stud);
// delete stud;
// std::cout<<"---------------"<<std::endl;
// Person *pStud=new Student("Holger", "9876");
// printPersonInfo(pStud);
// delete pStud;
Employee emp("Dieter","Mr. Schulz");
printPersonInfo(&emp);
StudentAssistant assi("Mira","Bellen","Baum");
printPersonInfo(&assi);
}
void t_doall() {
std::vector<unsigned> V(1024);
unsigned M = GaloisRuntime::LL::getMaxThreads();
std::cout << "doall:\nIterxSize\n";
while (M) {
Galois::setActiveThreads(M); //GaloisRuntime::LL::getMaxThreads());
std::cout << "Using " << M << " threads\n";
Galois::Timer t;
t.start();
for (unsigned x = 0; x < iter; ++x)
Galois::do_all(V.begin(), V.end(), emp());
t.stop();
std::cout << "Galois(" << iter << "x" << V.size() << "): " << t.get() << "\n";
M >>= 1;
}
}
//Menu Options---------------
void FileManager::openFile()
{
string name;
cout << "Enter the name of the file to open: ";
cin >> name;
while (name == "readme.txt" || name == "recent.txt")
{
cout << "\aOops... Those files are for read only choose another file to open" << endl;
cin >> name;
}
name.append(".txt");
ifstream file;
file.open(name);
while(file.fail())
{
cout << "\aFile with the name of " << name << " does not exist" << endl;
cout << "Please try again." << endl;
cout << "Enter the name of the file to open: ";
cin >> name;
name.append(".txt");
file.close();
file.open(name);
}
FileReader emp(name);
if (emp.is_empty(name))
{
cout << "File is empty." << endl;
}
else
{
cout << "\nThis is what the file has currently written" << endl << endl;
}
FileReader read(name);
read.fileRead();
file.close();
Editor mem(name);
mem.menu();
}
int
main(int argc, char** argv)
{
const unsigned int T_SIZE = 3; // size for tournament selection
const unsigned int VEC_SIZE = 3; // Number of object variables in genotypes
const unsigned int POP_SIZE = 10; // Size of population
const unsigned int MAX_GEN = 1000; // Maximum number of generation before STOP
const unsigned int MIN_GEN = 10; // Minimum number of generation before ...
const unsigned int STEADY_GEN = 10; // stop after STEADY_GEN gen. without improvement
const float P_CROSS = 0.8; // Crossover probability
const float P_MUT = 0.5; // mutation probability
const double EPSILON = 0.01; // range for real uniform mutation
double SIGMA = 0.3; // std dev. for normal mutation
// some parameters for chosing among different operators
const double hypercubeRate = 0.5; // relative weight for hypercube Xover
const double segmentRate = 0.5; // relative weight for segment Xover
const double uniformMutRate = 0.5; // relative weight for uniform mutation
const double detMutRate = 0.5; // relative weight for det-uniform mutation
const double normalMutRate = 0.5; // relative weight for normal mutation
const unsigned int SEED = 42; // seed for random number generator
po::options_description desc;
std::string matrixdir, model, nullmodel, trainingset, testingset, lastrun;
desc.add_options()
("matrixdir", po::value<std::string>(&matrixdir),
"The directory set up by SOFT2Matrix")
("model", po::value<std::string>(&model),
"The gene regulatory network model")
("nullmodel", po::value<std::string>(&nullmodel),
"The gene regulatory network null (scrambled) model")
("trainingset", po::value<std::string>(&trainingset),
"The list of arrays which have been selected for inclusion in the training set")
("testingset", po::value<std::string>(&testingset),
"The list of arrays which have been selected for inclusion in the testing set")
("lastrun", po::value<std::string>(&lastrun),
"The output file from the last run, to re-use scores from (optional)")
;
po::variables_map vm;
po::store(po::parse_command_line(argc, argv, desc), vm);
po::notify(vm);
std::string wrong;
if (!vm.count("help"))
{
if (!vm.count("matrixdir"))
wrong = "matrixdir";
else if (!vm.count("model"))
wrong = "model";
else if (!vm.count("trainingset"))
wrong = "trainingset";
else if (!vm.count("testingset"))
wrong = "testingset";
else if (!vm.count("nullmodel"))
wrong = "nullmodel";
}
if (wrong != "")
std::cerr << "Missing option: " << wrong << std::endl;
if (vm.count("help") || wrong != "")
{
std::cout << desc << std::endl;
return 1;
}
if (!fs::is_directory(matrixdir))
{
std::cout << "Matrix directory doesn't exist."
<< std::endl;
return 1;
}
if (!fs::is_regular(model))
{
std::cout << "Model file doesn't exist or not regular file."
<< std::endl;
return 1;
}
if (!fs::is_regular(nullmodel))
{
std::cout << "Null model file doesn't exist or not regular file."
<< std::endl;
return 1;
}
if (!fs::is_regular(trainingset))
{
std::cout << "Training set file doesn't exist or not regular file."
<< std::endl;
return 1;
}
if (!fs::is_regular(testingset))
{
std::cout << "Testing set file doesn't exist or not regular file."
<< std::endl;
return 1;
}
std::list<double> lastRun;
if (fs::is_regular(lastrun))
{
std::ifstream flastrun(lastrun.c_str());
static const boost::regex prev(".*SVM Result: .* Result \\(([^\\)]+)\\).*");
while (flastrun.good())
{
std::string l;
std::getline(flastrun, l);
boost::smatch m;
if (!boost::regex_match(l, m, prev))
{
continue;
}
lastRun.push_back(strtod(m[1].str().c_str(), NULL));
}
}
ExpressionMatrixProcessor emp(matrixdir);
GRNModel m(model, emp, 30);
GRNModel m2(nullmodel, emp, 30);
std::list<std::string> trainingArrays, testingArrays;
m.loadArraySet(trainingset, trainingArrays);
m.loadArraySet(testingset, testingArrays);
m.loadSVMTrainingData(trainingArrays);
m2.loadArraySet(trainingset, trainingArrays);
m2.loadArraySet(testingset, testingArrays);
m2.loadSVMTrainingData(trainingArrays);
// We seed it just so we can restart if need be.
rng.reseed(SEED);
EvaluateSVMFit eval(m, m2, trainingArrays, lastRun, 30, testingArrays.size());
std::vector<double> minVals, maxVals;
// log(gamma)
minVals.push_back(-15);
maxVals.push_back(15);
// log(C)
minVals.push_back(-15);
maxVals.push_back(2);
// nu
minVals.push_back(0);
maxVals.push_back(1);
eoRealVectorBounds rvb(minVals, maxVals);
eoRealInitBounded<Indi> random(rvb);
eoPop<Indi> pop(POP_SIZE, random);
apply<Indi>(eval, pop);
pop.sort();
std::cout << "Initial Population" << std::endl;
std::cout << pop;
eoDetTournamentSelect<Indi> selectOne(T_SIZE);
eoSelectPerc<Indi> select(selectOne);// by default rate==1
eoGenerationalReplacement<Indi> replace;
eoSegmentCrossover<Indi> xoverS;
eoHypercubeCrossover<Indi> xoverA;
eoPropCombinedQuadOp<Indi> xover(xoverS, segmentRate);
xover.add(xoverA, hypercubeRate, true);
eoUniformMutation<Indi> mutationU(EPSILON);
eoDetUniformMutation<Indi> mutationD(EPSILON);
eoNormalMutation<Indi> mutationN(SIGMA);
eoPropCombinedMonOp<Indi> mutation(mutationU, uniformMutRate);
mutation.add(mutationD, detMutRate);
mutation.add(mutationN, normalMutRate, true);
eoGenContinue<Indi> genCont(MAX_GEN);
eoSteadyFitContinue<Indi> steadyCont(MIN_GEN, STEADY_GEN);
eoCombinedContinue<Indi> continuator(genCont);
continuator.add(steadyCont);
eoSGATransform<Indi> transform(xover, P_CROSS, mutation, P_MUT);
eoEasyEA<Indi> gga(continuator, eval, select, transform, replace);
gga(pop);
pop.sort();
std::cout << "Final Population:"
<< std::endl << pop << std::endl;
return 0;
}
void FileManager::copyFile()
{
string source, destination, content;
FileReader emp(source);
do
{
cout << "Enter the name of the source file: ";
cin >> source;
source.append(".txt");
if (FileManager::fileExist(source))
{
cout << "This file does not exist. Try a file that exist." << endl;
}
if (emp.is_empty(source) && !FileManager::fileExist(source))
{
cout << "\aThis file is empty. Try a file with something on it.\n";
}
} while (emp.is_empty(source));
fstream file(source);
while (!file.eof())
{
getline(file, content, '~');
}
if (file.fail())
{
cout << "\aFile with the name of " << source << " does not exist" << endl;
}
else
{
do
{
cout << "Enter the name of the destination file: ";
cin >> destination;
destination.append(".txt");
if (FileManager::toUpper(destination) == FileManager::toUpper(source))
{
cout << "\aYou cant clone a file to itself. Try Again. \n\n Destination File: ";
cin >> destination;
destination.append(".txt");
}
} while (FileManager::toUpper(destination) == FileManager::toUpper(source));
destination.append(".txt");
ofstream file2(destination);
fstream file3(destination);
if (file3.is_open())
{
file3 << content;
FileManager::loading();
cout << "\aFile Cloning Completed." << endl << "You are editing " << destination << endl;
}
file.close();
if (file3.is_open())
{
file3.close();
Editor edit(destination);
edit.menu();
}
else
{
cout << "\aWhoops! You broke something. Try Again!" << endl;
}
}
}
