void fsd_job_get_termination_status( fsd_job_t *self, int *status, fsd_iter_t **rusage_out ) { fsd_iter_t* volatile rusage = NULL; TRY { if( rusage_out ) { rusage = fsd_iter_new( NULL, 0 ); rusage->append( rusage, fsd_asprintf( "submission_time=%ld", (long)self->submit_time ) ); if (self->start_time) rusage->append( rusage, fsd_asprintf( "start_time=%ld", (long)self->start_time ) ); if (self->end_time) rusage->append( rusage, fsd_asprintf( "end_time=%ld", (long)self->end_time ) ); rusage->append( rusage, fsd_asprintf( "cpu=%ld", self->cpu_usage ) ); rusage->append( rusage, fsd_asprintf( "mem=%ld", self->mem_usage ) ); rusage->append( rusage, fsd_asprintf( "vmem=%ld", self->vmem_usage ) ); rusage->append( rusage, fsd_asprintf( "walltime=%ld", self->walltime ) ); rusage->append( rusage, fsd_asprintf( "hosts=%s", self->execution_hosts ) ); if (self->queue) { rusage->append( rusage, fsd_asprintf("queue=%s", self->queue ) ); } if (self->project) { rusage->append( rusage, fsd_asprintf("project=%s", self->project ) ); } } } EXCEPT_DEFAULT { if( rusage ) rusage->destroy( rusage ); if( rusage_out ) *rusage_out = NULL; fsd_exc_reraise(); } ELSE { if( status ) *status = self->exit_status; if( rusage_out ) *rusage_out = rusage; } END_TRY }
void slurmdrmaa_job_create_req( fsd_drmaa_session_t *session, const fsd_template_t *jt, fsd_environ_t **envp, job_desc_msg_t * job_desc, int n_job /* ~job_step */ ) { fsd_expand_drmaa_ph_t *volatile expand = NULL; TRY { expand = fsd_expand_drmaa_ph_new( NULL, NULL, fsd_asprintf("%d",n_job) ); slurmdrmaa_job_create( session, jt, envp, expand, job_desc, n_job); } EXCEPT_DEFAULT { fsd_exc_reraise(); } FINALLY { if( expand ) expand->destroy( expand ); } END_TRY }
void slurmdrmaa_job_create( fsd_drmaa_session_t *session, const fsd_template_t *jt, fsd_environ_t **envp, fsd_expand_drmaa_ph_t *expand, job_desc_msg_t * job_desc, int n_job ) { const char *input_path_orig = NULL; const char *output_path_orig = NULL; const char *error_path_orig = NULL; char *volatile input_path = NULL; char *volatile output_path = NULL; char *volatile error_path = NULL; bool input_host = false; bool output_host = false; bool error_host = false; bool join_files = false; const char *value; const char *const *vector; const char *job_category = "default"; job_desc->user_id = getuid(); job_desc->group_id = getgid(); job_desc->env_size = 0; /* job name */ value = jt->get_attr( jt, DRMAA_JOB_NAME ); if( value ) { job_desc->name = fsd_strdup(value); fsd_log_debug(("# job_name = %s",job_desc->name)); } /* job state at submit */ value = jt->get_attr( jt, DRMAA_JS_STATE ); if( value ) { if( 0 == strcmp( value, DRMAA_SUBMISSION_STATE_ACTIVE ) ) {} else if( 0 == strcmp( value, DRMAA_SUBMISSION_STATE_HOLD ) ) { job_desc->priority = 0; fsd_log_debug(("# hold = user")); } else { fsd_exc_raise_msg(FSD_DRMAA_ERRNO_INVALID_ATTRIBUTE_VALUE, "invalid value of drmaa_js_state attribute" ); } } TRY { const char *command = NULL; char *command_expanded = NULL; char *temp_script_old = NULL; char *temp_script = ""; const char *const *i; int j; /* remote command */ command = jt->get_attr( jt, DRMAA_REMOTE_COMMAND ); if( command == NULL ) fsd_exc_raise_msg( FSD_DRMAA_ERRNO_CONFLICTING_ATTRIBUTE_VALUES, "drmaa_remote_command not set for job template" ); command_expanded = expand->expand( expand, fsd_strdup(command), FSD_DRMAA_PH_HD | FSD_DRMAA_PH_WD ); temp_script = fsd_asprintf("#!/bin/bash\n%s",command_expanded); fsd_free(command_expanded); /* arguments list */ vector = jt->get_v_attr( jt, DRMAA_V_ARGV ); if( vector ) { for( i = vector, j = 2; *i; i++, j++ ) { char *arg_expanded = expand->expand( expand, fsd_strdup(*i), FSD_DRMAA_PH_HD | FSD_DRMAA_PH_WD ); temp_script_old = fsd_strdup(temp_script); if (strcmp(temp_script, "") != 0) { fsd_free(temp_script); } /* add too script */ temp_script = fsd_asprintf("%s '%s'", temp_script_old, arg_expanded); fsd_free(temp_script_old); fsd_free(arg_expanded); } } job_desc->script = fsd_asprintf("%s\n", temp_script); fsd_log_debug(("# Script:\n%s", job_desc->script)); fsd_free(temp_script); } END_TRY /* start time */ value = jt->get_attr( jt, DRMAA_START_TIME ); if( value ) { job_desc->begin_time = fsd_datetime_parse( value ); fsd_log_debug(( "\n drmaa_start_time: %s -> %ld", value, (long)job_desc->begin_time)); } /* propagate all environment variables from submission host */ { extern char **environ; char **i; unsigned j = 0; for ( i = environ; *i; i++) { job_desc->env_size++; } fsd_log_debug(("environ env_size = %d",job_desc->env_size)); fsd_calloc(job_desc->environment, job_desc->env_size+1, char *); for ( i = environ; *i; i++,j++ ) { job_desc->environment[j] = fsd_strdup(*i); } } /* environment */ vector = jt->get_v_attr( jt, DRMAA_V_ENV ); if( vector ) { const char *const *i; unsigned j = 0; unsigned env_offset = job_desc->env_size; for( i = vector; *i; i++ ) { job_desc->env_size++; } fsd_log_debug(("jt env_size = %d",job_desc->env_size)); fsd_log_debug(("# environment =")); fsd_realloc(job_desc->environment, job_desc->env_size+1, char *); for( i = vector; *i; i++,j++ ) { job_desc->environment[j + env_offset] = fsd_strdup(*i); fsd_log_debug((" %s", job_desc->environment[j+ env_offset])); } } /* wall clock time hard limit */ value = jt->get_attr( jt, DRMAA_WCT_HLIMIT ); if (value) { job_desc->time_limit = slurmdrmaa_datetime_parse( value ); fsd_log_debug(("# wct_hlimit = %s -> %ld",value, (long int)slurmdrmaa_datetime_parse( value ))); } /*expand->set(expand, FSD_DRMAA_PH_INCR,fsd_asprintf("%d", n_job));*/ /* set current value */ /* TODO: test drmaa_ph_incr */ /* job working directory */ value = jt->get_attr( jt, DRMAA_WD ); if( value ) { char *cwd_expanded = expand->expand( expand, fsd_strdup(value), FSD_DRMAA_PH_HD | FSD_DRMAA_PH_INCR ); expand->set( expand, FSD_DRMAA_PH_WD, fsd_strdup(cwd_expanded)); fsd_log_debug(("# work_dir = %s",cwd_expanded)); job_desc->work_dir = fsd_strdup(cwd_expanded); fsd_free(cwd_expanded); } else { char cwdbuf[4096] = ""; if ((getcwd(cwdbuf, 4095)) == NULL) { char errbuf[256] = "InternalError"; (void)strerror_r(errno, errbuf, 256); /*on error the default message would be returned */ fsd_log_error(("getcwd failed: %s", errbuf)); job_desc->work_dir = fsd_strdup("."); } else { job_desc->work_dir = fsd_strdup(cwdbuf); } fsd_log_debug(("work_dir(default:CWD) %s", job_desc->work_dir)); } TRY { /* input path */ input_path_orig = jt->get_attr( jt, DRMAA_INPUT_PATH ); if( input_path_orig ) { input_path = internal_map_file( expand, input_path_orig, &input_host,"input" ); fsd_log_debug(( "\n drmaa_input_path: %s -> %s", input_path_orig, input_path )); } /* output path */ output_path_orig = jt->get_attr( jt, DRMAA_OUTPUT_PATH ); if( output_path_orig ) { output_path = internal_map_file( expand, output_path_orig, &output_host,"output" ); fsd_log_debug(( "\n drmaa_output_path: %s -> %s", output_path_orig, output_path )); } /* error path */ error_path_orig = jt->get_attr( jt, DRMAA_ERROR_PATH ); if( error_path_orig ) { error_path = internal_map_file( expand, error_path_orig, &error_host,"error" ); fsd_log_debug(( "\n drmaa_error_path: %s -> %s", error_path_orig, error_path )); } /* join files */ value = jt->get_attr( jt, DRMAA_JOIN_FILES ); if( value ) { if( (value[0] == 'y' || value[0] == 'Y') && value[1] == '\0' ) join_files = true; else if( (value[0] == 'n' || value[0] == 'N') && value[1] == '\0' ) join_files = false; else fsd_exc_raise_msg( FSD_DRMAA_ERRNO_INVALID_ATTRIBUTE_VALUE, "invalid value of drmaa_join_files attribute" ); } if( join_files ) { if( output_path == NULL ) fsd_exc_raise_msg(FSD_DRMAA_ERRNO_CONFLICTING_ATTRIBUTE_VALUES, "drmaa_join_files is set and output file is not given" ); if( error_path!=NULL && 0 != strcmp( output_path, error_path ) ) fsd_log_warning(( "Error file was given but will be ignored since drmaa_join_files was set." )); if (error_path) fsd_free(error_path); error_path = fsd_strdup(output_path); } else { if( error_path == NULL && output_path ) error_path = fsd_strdup( "/dev/null" ); if( output_path == NULL && error_path ) output_path = fsd_strdup( "/dev/null" ); } /* email addresses to send notifications */ vector = jt->get_v_attr( jt, DRMAA_V_EMAIL ); if( vector && vector[0] ) { /* only to one email address message may be send */ job_desc->mail_user = fsd_strdup(vector[0]); job_desc->mail_type = MAIL_JOB_BEGIN | MAIL_JOB_END | MAIL_JOB_FAIL; fsd_log_debug(("# mail_user = %s\n",vector[0])); fsd_log_debug(("# mail_type = %o\n",job_desc->mail_type)); if( vector[1] != NULL ) { fsd_log_error(( "SLURM only supports one e-mail notification address" )); fsd_exc_raise_msg(FSD_DRMAA_ERRNO_INVALID_ATTRIBUTE_VALUE,"SLURM only supports one e-mail notification address"); } } /* block email */ value = jt->get_attr( jt, DRMAA_BLOCK_EMAIL ); if( value ) { bool block; if( strcmp(value, "0") == 0 ) { block = true; fsd_log_debug(("# block_email = true")); fsd_log_debug(("# mail_user delated")); fsd_free(job_desc->mail_user); job_desc->mail_user = NULL; } else if( strcmp(value, "1") == 0 ) block = false; else fsd_exc_raise_msg(FSD_DRMAA_ERRNO_INVALID_ATTRIBUTE_VALUE,"invalid value of drmaa_block_email attribute" ); if( block && output_path == NULL ) { fsd_log_debug(( "output path not set and we want to block e-mail, set to /dev/null" )); output_path = fsd_strdup( "/dev/null" ); } } if( input_path ) { job_desc->std_in = fsd_strdup(input_path); fsd_log_debug(("# input = %s", input_path)); } if( output_path ) { job_desc->std_out = fsd_strdup(output_path); fsd_log_debug(("# output = %s", output_path)); } if( error_path ) { job_desc->std_err = fsd_strdup(error_path); fsd_log_debug(("# error = %s", error_path)); } } FINALLY { fsd_free( input_path ); fsd_free( output_path ); fsd_free( error_path ); input_path = NULL; output_path = NULL; error_path = NULL; } END_TRY /* job category */ value = jt->get_attr( jt, DRMAA_JOB_CATEGORY ); if( value ) job_category = value; { fsd_conf_option_t *category_value = NULL; category_value = fsd_conf_dict_get( session->job_categories, job_category ); if( category_value != NULL ) { if( category_value->type != FSD_CONF_STRING ) fsd_exc_raise_fmt( FSD_ERRNO_INTERNAL_ERROR, "configuration error: job category should be string" ); fsd_log_debug(("# Job category %s : %s\n",value,category_value->val.string)); slurmdrmaa_parse_native(job_desc,category_value->val.string); } else { if( value != NULL ) fsd_exc_raise_fmt( FSD_DRMAA_ERRNO_INVALID_ATTRIBUTE_VALUE, "invalid job category: %s", job_category ); } } /* set defaults for constraints - ref: slurm.h */ fsd_log_debug(("# Setting defaults for tasks and processors" )); job_desc->num_tasks = 1; job_desc->min_cpus = 0; job_desc->cpus_per_task = 0; job_desc->pn_min_cpus = 0; /* native specification */ value = jt->get_attr( jt, DRMAA_NATIVE_SPECIFICATION ); if( value ) { fsd_log_debug(("# Native specification: %s\n", value)); slurmdrmaa_parse_native(job_desc, value); } }
fsd_iter_t * slurmdrmaa_session_run_bulk( fsd_drmaa_session_t *self, const fsd_template_t *jt, int start, int end, int incr ) { int ret = 0; unsigned i = 0; int job_id = 0; int task_id = 0; fsd_job_t *volatile job = NULL; volatile unsigned n_jobs = (end - start) / incr + 1; char ** volatile job_ids = fsd_calloc( job_ids, n_jobs + 1, char* ); volatile bool connection_lock = false; fsd_environ_t *volatile env = NULL; job_desc_msg_t job_desc; submit_response_msg_t *submit_response = NULL; slurmdrmaa_init_job_desc( &job_desc ); TRY { connection_lock = fsd_mutex_lock( &self->drm_connection_mutex ); slurmdrmaa_job_create_req( self, jt, (fsd_environ_t**)&env , &job_desc, 0 ); /* Create job array spec if more than 1 task */ if(n_jobs > 1) { fsd_calloc(job_desc.array_inx, ARRAY_INX_MAXLEN, char*); ret = snprintf(job_desc.array_inx, ARRAY_INX_MAXLEN, "%d-%d:%d", start, end, incr ); if (ret < 0 || ret >= ARRAY_INX_MAXLEN) { fsd_exc_raise_fmt(FSD_ERRNO_INTERNAL_ERROR, "snprintf: not enough memory"); } fsd_log_debug(("array job '%s' prepared", job_desc.array_inx)); } /* Submit the batch job */ if(slurm_submit_batch_job(&job_desc, &submit_response) != SLURM_SUCCESS){ fsd_exc_raise_fmt( FSD_ERRNO_INTERNAL_ERROR,"slurm_submit_batch_job: %s",slurm_strerror(slurm_get_errno())); } connection_lock = fsd_mutex_unlock( &self->drm_connection_mutex ); /* Watch each job in the array */ for (i = 0; i < n_jobs; ++i) { job_id = (int) submit_response->job_id; task_id = start + i*incr; if (n_jobs > 1) { /* Array job */ if (!working_cluster_rec) job_ids[i] = fsd_asprintf("%d_%d", job_id, task_id); /* .0*/ else job_ids[i] = fsd_asprintf("%d_%d.%s", job_id, task_id, working_cluster_rec->name); } else { /* Single job */ if (!working_cluster_rec) job_ids[i] = fsd_asprintf("%d", job_id); /* .0*/ else job_ids[i] = fsd_asprintf("%d.%s", job_id, working_cluster_rec->name); } fsd_log_debug(("job %s submitted", job_ids[i])); job = slurmdrmaa_job_new( fsd_strdup(job_ids[i]) ); job->session = self; job->submit_time = time(NULL); self->jobs->add( self->jobs, job ); job->release( job ); job = NULL; } if (working_cluster_rec) slurmdb_destroy_cluster_rec(working_cluster_rec); working_cluster_rec = NULL; }