void MySQLResult::addRow() {
m_row_count++;
m_rows->push_back(req::vector<Variant>());
m_rows->back().reserve(getFieldCount());
}
int ClassFile::getObjectSize()
{
int fieldCount = getFieldCount();
//Todo callculate size of different types;
return fieldCount;
}
void loadOneBed(struct lineFile *lf, int bedSize, struct bedStub **pList)
/* Load one bed file. Make sure all lines have the correct number of fields.
* Put results in *pList. */
{
char *words[64], *line, *dupe;
int wordCount;
struct bedStub *bed;
struct asObject *asObj = getAsObj(bedSize);
int fieldCount = getFieldCount(bedSize, asObj);
struct bed *validateBed;
AllocVar(validateBed);
verbose(1, "Reading %s\n", lf->fileName);
while (lineFileNextReal(lf, &line))
{
if (hasBin)
nextWord(&line);
dupe = cloneString(line);
if (strictTab)
wordCount = chopTabs(line, words);
else
wordCount = chopLine(line, words);
/* ignore empty lines */
if (0 == wordCount)
continue;
lineFileExpectWords(lf, fieldCount, wordCount);
if (type)
// TODO also, may need to add a flag to the validateBed() interface to support -allowNegativeScores when not isCt
// although can probably get away without it since usually -allowNegativeScores is used by ct which has already verified it.
// thus -allowNegativeScores is unlikely to be used with -type.
{
loadAndValidateBed(words, typeBedN, fieldCount, lf, validateBed, asObj, FALSE);
checkChromNameAndSize(lf, validateBed->chrom, validateBed->chromEnd);
}
AllocVar(bed);
bed->chrom = cloneString(words[0]);
bed->chromStart = lineFileNeedNum(lf, words, 1);
bed->chromEnd = lineFileNeedNum(lf, words, 2);
if (! noStrict)
{
if ((bed->chromEnd < 1) && !allowStartEqualEnd)
errAbort("ERROR: line %d:'%s'\nchromEnd is less than 1\n",
lf->lineIx, dupe);
if (bed->chromStart == bed->chromEnd && !allowStartEqualEnd)
errAbort("ERROR: line %d:'%s'\nchromStart == chromEnd (%d) (zero-length item)\n"
"Use -allowStartEqualEnd if that is legit (e.g. for insertion point).\n",
lf->lineIx, dupe, bed->chromStart);
if (bed->chromStart > bed->chromEnd)
errAbort("ERROR: line %d:'%s'\nchromStart after chromEnd (%d > %d)\n",
lf->lineIx, dupe, bed->chromStart, bed->chromEnd);
}
bed->line = dupe;
slAddHead(pList, bed);
}
if (asObj)
asObjectFreeList(&asObj);
freez(&validateBed);
}
le_int16 ValueRecord::getSize(ValueFormat valueFormat)
{
return getFieldCount(valueFormat) * sizeof(le_int16);
}
ostream& HumdrumLine::printXml(ostream& out, int level, const string& indent) {
if (hasSpines()) {
out << Convert::repeatString(indent, level) << "<frame";
out << " n=\"" << getLineIndex() << "\"";
out << " xml:id=\"" << getXmlId() << "\"";
out << ">\n";
level++;
out << Convert::repeatString(indent, level) << "<frameInfo>\n";
level++;
out << Convert::repeatString(indent, level) << "<fieldCount>";
out << getTokenCount() << "</fieldCount>\n";
out << Convert::repeatString(indent, level);
out << "<frameStart";
out << Convert::getHumNumAttributes(getDurationFromStart());
out << "/>\n";
out << Convert::repeatString(indent, level);
out << "<frameDuration";
out << Convert::getHumNumAttributes(getDuration());
out << "/>\n";
out << Convert::repeatString(indent, level) << "<frameType>";
if (isData()) {
out << "data";
} else if (isBarline()) {
out << "barline";
} else if (isInterpretation()) {
out << "interpretation";
} else if (isLocalComment()) {
out << "local-comment";
}
out << "</frameType>\n";
if (isBarline()) {
// print the duration to the next barline or to the end of the score
// if there is no barline at the end of the score.
out << Convert::repeatString(indent, level);
out << "<barlineDuration";
out << Convert::getHumNumAttributes(getBarlineDuration());
out << "/>\n";
}
bool bstart = isKernBoundaryStart();
bool bend = isKernBoundaryEnd();
if (bstart || bend) {
out << Convert::repeatString(indent, level);
cout << "<kernBoundary";
cout << " start=\"";
if (bstart) {
cout << "true";
} else {
cout << "false";
}
cout << "\"";
cout << " end=\"";
if (bend) {
cout << "true";
} else {
cout << "false";
}
cout << "\"";
cout << "/>\n";
}
level--;
out << Convert::repeatString(indent, level) << "</frameInfo>\n";
out << Convert::repeatString(indent, level) << "<fields>\n";
level++;
for (int i=0; i<getFieldCount(); i++) {
token(i)->printXml(out, level, indent);
}
level--;
out << Convert::repeatString(indent, level) << "</fields>\n";
level--;
out << Convert::repeatString(indent, level) << "</frame>\n";
} else {
// global comments, reference records, or blank lines print here.
out << Convert::repeatString(indent, level) << "<metaFrame";
out << " n=\"" << getLineIndex() << "\"";
out << " token=\"" << Convert::encodeXml(((string)(*this))) << "\"";
out << " xml:id=\"" << getXmlId() << "\"";
out << "/>\n";
level++;
out << Convert::repeatString(indent, level) << "<frameInfo>\n";
level++;
out << Convert::repeatString(indent, level);
out << "<startTime";
out << Convert::getHumNumAttributes(getDurationFromStart());
out << "/>\n";
out << Convert::repeatString(indent, level) << "<frameType>";
if (isReference()) {
out << "reference";
} else if (isBlank()) {
out << "empty";
} else {
out << "global-comment";
}
out << "</frameType>\n";
if (isReference()) {
out << Convert::repeatString(indent, level);
out << "<referenceKey>" << Convert::encodeXml(getReferenceKey());
out << "</referenceKey>\n";
out << Convert::repeatString(indent, level);
out << "<referenceValue>" << Convert::encodeXml(getReferenceValue());
out << "</referenceValue>\n";
}
level--;
out << Convert::repeatString(indent, level) << "<frameInfo>\n";
level--;
out << Convert::repeatString(indent, level) << "</metaFrame>\n";
}
return out;
}
