// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MinSize::dataCheck()
{
setErrorCondition(0);
QVector<DataArrayPath> dataArrayPaths;
if (getMinAllowedFeatureSize() < 0)
{
QString ss = QObject::tr("The minimum Feature size (%1) must be 0 or positive").arg(getMinAllowedFeatureSize());
setErrorCondition(-5555);
notifyErrorMessage(getHumanLabel(), ss, getErrorCondition());
}
getDataContainerArray()->getPrereqGeometryFromDataContainer<ImageGeom, AbstractFilter>(this, getFeatureIdsArrayPath().getDataContainerName());
QVector<size_t> cDims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
m_NumCellsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getNumCellsArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_NumCellsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_NumCells = m_NumCellsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getNumCellsArrayPath()); }
if(m_ApplyToSinglePhase == true)
{
m_FeaturePhasesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeaturePhasesArrayPath(), cDims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeaturePhasesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeaturePhases = m_FeaturePhasesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() >= 0) { dataArrayPaths.push_back(getFeaturePhasesArrayPath()); }
}
getDataContainerArray()->validateNumberOfTuples(this, dataArrayPaths);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MinSize::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setFeaturePhasesArrayPath(reader->readDataArrayPath("FeaturePhasesArrayPath", getFeaturePhasesArrayPath() ) );
setNumCellsArrayPath(reader->readDataArrayPath("NumCellsArrayPath", getNumCellsArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setMinAllowedFeatureSize( reader->readValue("MinAllowedFeatureSize", getMinAllowedFeatureSize()) );
setApplyToSinglePhase( reader->readValue("ApplyToSinglePhase", getApplyToSinglePhase() ) );
setPhaseNumber( reader->readValue("PhaseNumber", getPhaseNumber() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindEllipsoidError::readFilterParameters(AbstractFilterParametersReader* reader, int index)
{
reader->openFilterGroup(this, index);
setCellFeatureAttributeMatrixName(reader->readDataArrayPath("CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName()));
setCentroidsArrayPath(reader->readDataArrayPath("CentroidsArrayPath", getCentroidsArrayPath() ) );
setFeatureIdsArrayPath(reader->readDataArrayPath("FeatureIdsArrayPath", getFeatureIdsArrayPath() ) );
setAxisEulerAnglesArrayPath(reader->readDataArrayPath("AxisEulerAnglesArrayPath", getAxisEulerAnglesArrayPath()));
setNumCellsArrayPath(reader->readDataArrayPath("NumCellsArrayPath", getNumCellsArrayPath()));
setAxisLengthsArrayPath(reader->readDataArrayPath("AxisLengthsArrayPath", getAxisLengthsArrayPath()));
setIdealFeatureIdsArrayName(reader->readString("IdealFeatureIdsArrayName", getIdealFeatureIdsArrayName() ) );
setEllipsoidErrorArrayName(reader->readString("EllipsoidErrrorArrayName", getEllipsoidErrorArrayName() ) );
setWriteIdealEllipseFeatureIds(reader->readValue("WriteIdealEllipseFeatureIds", getWriteIdealEllipseFeatureIds() ) );
reader->closeFilterGroup();
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void MinSize::setupFilterParameters()
{
FilterParameterVector parameters;
parameters.push_back(IntFilterParameter::New("Minimum Allowed Feature Size", "MinAllowedFeatureSize", getMinAllowedFeatureSize(), FilterParameter::Parameter));
QStringList linkedProps;
linkedProps << "PhaseNumber" << "FeaturePhasesArrayPath";
parameters.push_back(LinkedBooleanFilterParameter::New("Apply to Single Phase Only", "ApplyToSinglePhase", getApplyToSinglePhase(), linkedProps, FilterParameter::Parameter));
parameters.push_back(IntFilterParameter::New("Phase Index", "PhaseNumber", getPhaseNumber(), FilterParameter::Parameter));
parameters.push_back(SeparatorFilterParameter::New("Cell Data", FilterParameter::RequiredArray));
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixType::Cell, SIMPL::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Feature Ids", "FeatureIdsArrayPath", getFeatureIdsArrayPath(), FilterParameter::RequiredArray, req));
}
parameters.push_back(SeparatorFilterParameter::New("Cell Feature Data", FilterParameter::RequiredArray));
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixType::CellFeature, SIMPL::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Feature Phases", "FeaturePhasesArrayPath", getFeaturePhasesArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req = DataArraySelectionFilterParameter::CreateRequirement(SIMPL::TypeNames::Int32, 1, SIMPL::AttributeMatrixType::CellFeature, SIMPL::GeometryType::ImageGeometry);
parameters.push_back(DataArraySelectionFilterParameter::New("Number of Cells", "NumCellsArrayPath", getNumCellsArrayPath(), FilterParameter::RequiredArray, req));
}
setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindEllipsoidError::setupFilterParameters()
{
FilterParameterVector parameters;
QStringList linkedProps("IdealFeatureIdsArrayName");
parameters.push_back(LinkedBooleanFilterParameter::New("Write Ideal Ellipse Feature Ids (Caution LONG calculation)", "WriteIdealEllipseFeatureIds", getWriteIdealEllipseFeatureIds(), linkedProps, FilterParameter::Parameter));
{
DataArraySelectionFilterParameter::RequirementType req;
parameters.push_back(DataArraySelectionFilterParameter::New("FeatureIds", "FeatureIdsArrayPath", getFeatureIdsArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req;
parameters.push_back(DataArraySelectionFilterParameter::New("Centroids", "CentroidsArrayPath", getCentroidsArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req;
parameters.push_back(DataArraySelectionFilterParameter::New("NumCells", "NumCellsArrayPath", getNumCellsArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req;
parameters.push_back(DataArraySelectionFilterParameter::New("Axis Eulers", "AxisEulerAnglesArrayPath", getAxisEulerAnglesArrayPath(), FilterParameter::RequiredArray, req));
}
{
DataArraySelectionFilterParameter::RequirementType req;
parameters.push_back(DataArraySelectionFilterParameter::New("AxisLengths", "AxisLengthsArrayPath", getAxisLengthsArrayPath(), FilterParameter::RequiredArray, req));
}
{
AttributeMatrixSelectionFilterParameter::RequirementType req = AttributeMatrixSelectionFilterParameter::CreateRequirement(DREAM3D::AttributeMatrixType::CellFeature, DREAM3D::GeometryType::ImageGeometry);
parameters.push_back(AttributeMatrixSelectionFilterParameter::New("Cell Feature Attribute Matrix Name", "CellFeatureAttributeMatrixName", getCellFeatureAttributeMatrixName(), FilterParameter::RequiredArray, req));
}
parameters.push_back(StringFilterParameter::New("EllipsoidError", "EllipsoidErrorArrayName", getEllipsoidErrorArrayName(), FilterParameter::CreatedArray));
parameters.push_back(StringFilterParameter::New("IdealFeatureIds", "IdealFeatureIdsArrayName", getIdealFeatureIdsArrayName(), FilterParameter::CreatedArray));
setFilterParameters(parameters);
}
// -----------------------------------------------------------------------------
//
// -----------------------------------------------------------------------------
void FindEllipsoidError::dataCheck()
{
DataArrayPath tempPath;
setErrorCondition(0);
QVector<size_t> dims(1, 1);
m_FeatureIdsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getFeatureIdsArrayPath(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_FeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_FeatureIds = m_FeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if(getErrorCondition() < 0) { return; }
ImageGeom::Pointer image = getDataContainerArray()->getDataContainer(getFeatureIdsArrayPath().getDataContainerName())->getPrereqGeometry<ImageGeom, AbstractFilter>(this);
if(getErrorCondition() < 0 || NULL == image.get()) { return; }
dims[0] = 3;
m_CentroidsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getCentroidsArrayPath(), dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_CentroidsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_Centroids = m_CentroidsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 3;
m_AxisEulerAnglesPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAxisEulerAnglesArrayPath(), dims);
if( NULL != m_AxisEulerAnglesPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AxisEulerAngles = m_AxisEulerAnglesPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 3;
m_AxisLengthsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<float>, AbstractFilter>(this, getAxisLengthsArrayPath(), dims);
if( NULL != m_AxisLengthsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_AxisLengths = m_AxisLengthsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
dims[0] = 1;
m_NumCellsPtr = getDataContainerArray()->getPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter>(this, getNumCellsArrayPath(), dims);
if( NULL != m_NumCellsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_NumCells = m_NumCellsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
if (m_WriteIdealEllipseFeatureIds == true)
{
dims[0] = 1;
tempPath.update(m_FeatureIdsArrayPath.getDataContainerName(), m_FeatureIdsArrayPath.getAttributeMatrixName(), getIdealFeatureIdsArrayName() );
m_IdealFeatureIdsPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<int32_t>, AbstractFilter, int32_t>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_IdealFeatureIdsPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_IdealFeatureIds = m_IdealFeatureIdsPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
dims[0] = 1;
tempPath.update(m_NumCellsArrayPath.getDataContainerName(), m_NumCellsArrayPath.getAttributeMatrixName(), getEllipsoidErrorArrayName() );
m_EllipsoidErrorPtr = getDataContainerArray()->createNonPrereqArrayFromPath<DataArray<float>, AbstractFilter, float>(this, tempPath, 0, dims); /* Assigns the shared_ptr<> to an instance variable that is a weak_ptr<> */
if( NULL != m_EllipsoidErrorPtr.lock().get() ) /* Validate the Weak Pointer wraps a non-NULL pointer to a DataArray<T> object */
{ m_EllipsoidError = m_EllipsoidErrorPtr.lock()->getPointer(0); } /* Now assign the raw pointer to data from the DataArray<T> object */
}
