void Hierarchy::show(std::ostream &out) const
{
if (*this == Hierarchy()) {
out << "nullptr Molecular Hierarchy node";
return;
}
bool found=false;
if (get_as_atom()) {
found=true;
out << get_as_atom();
}
if (get_as_residue()){
found=true;
out << get_as_residue();
}
if (get_as_chain()) {
found=true;
out << get_as_chain();
} else if (get_as_molecule()) {
found=true;
out << get_as_molecule();
}
if (get_as_fragment()) {
found=true;
out << get_as_fragment();
}
if (get_as_domain()) {
found=true;
out << get_as_domain();
}
if (core::RigidBody::particle_is_instance(get_particle())) {
found=true;
out << core::RigidBody(get_particle());
}
if (core::RigidMember::particle_is_instance(get_particle())) {
found=true;
out << " rigid member: " << core::RigidMember(get_particle())
.get_rigid_body()->get_name();
}
if (get_as_xyzr()) {
found=true;
out << " sphere: " << get_as_xyzr().get_sphere();
} else if (get_as_xyz()) {
found=true;
out << " coordinates: " << get_as_xyz().get_coordinates();
}
if (!found) {
out << "Hierarchy \"" << get_particle()->get_name()
<< "\"";
}
}
void Hierarchy::show(std::ostream &out, std::string delimiter) const {
if (*this == Hierarchy()) {
out << "nullptr Molecular Hierarchy node";
return;
}
out << "\"" << get_particle()->get_name() << "\"" << delimiter;
if (get_as_atom()) {
out << get_as_atom() << delimiter;
}
if (get_as_residue()) {
out << get_as_residue() << delimiter;
}
if (get_as_chain()) {
out << get_as_chain() << delimiter;
} else if (get_as_molecule()) {
out << get_as_molecule() << delimiter;
}
if (get_as_fragment()) {
out << get_as_fragment() << delimiter;
}
if (get_as_domain()) {
out << get_as_domain() << delimiter;
}
if (core::RigidBody::get_is_setup(get_particle())) {
out << core::RigidBody(get_particle());
}
if (core::RigidMember::get_is_setup(get_particle())) {
out << " rigid member: "
<< core::RigidMember(get_particle()).get_rigid_body()->get_name();
}
if (get_as_xyzr()) {
out << get_as_xyzr().get_sphere();
} else if (get_as_xyz()) {
out << get_as_xyz().get_coordinates();
}
}
