result_t zlib_base::gzip(Buffer_base *data, obj_ptr<Buffer_base> &retVal,
exlib::AsyncEvent *ac)
{
if (switchToAsync(ac))
return CHECK_ERROR(CALL_E_NOSYNC);
return gz().process(data, retVal);
}
result_t zlib_base::gzipTo(Stream_base *src, Stream_base *stm,
exlib::AsyncEvent *ac)
{
if (!ac)
return CHECK_ERROR(CALL_E_NOSYNC);
return gz().process(src, stm, ac);
}
int AppGunzip::run(int argc, char **argv)
{
_options.parse(argc, argv);
ifstream ifs(argv[1]);
ofstream ofs(argv[2]);
BitInput2Stream bi(&ifs);
GzipStream gz(&bi);
gz.extractTo(ofs);
ofs.close();
ifs.close();
return 0;
}
int main(int argc, char** argv)
{
getOpts(argc, argv);
logMsg("Hello World!");
// 1 gz or 2 gz
if (gz2_path == "NONE")
{
logMsg("single gz");
GZ gz(gz1_path, output_path);
gz.testFunc(row_num, is_compress);
}
else
{
logMsg("double gz");
GZPair gzp(gz1_path, gz2_path, output_path);
gzp.testFunc(row_num, is_compress);
}
return 0;
}
//-----------------------------------------------------------------------------------------//
//--------------------------------DRAW NEW POINT TO THE GRAPHS-----------------------------//
//-----------------------------------------------------------------------------------------//
void RealTimePlotWindow::dataAvaible(QByteArray ext)
{
double przelicznik = 6103515625;//prescaler value
double memory = 2;
QVector<measurementData> data = ExtractData(ext);//extract data from dialogwinndow
quint16 newDataSize = data.size();
QVector<double> key(newDataSize);
QVector<double> ax(newDataSize);
QVector<double> ay(newDataSize);
QVector<double> az(newDataSize);
QVector<double> gx(newDataSize);
QVector<double> gy(newDataSize);
QVector<double> gz(newDataSize);
double keyPrescaler =0;
keyPrescaler = keyCounter / 200;
// qDebug()<<"znacznik";
for(double i = 0; i<newDataSize; i++)
{
key[i] = (double)keyPrescaler + (i/200);
// key[i] = (double)keyCounter;
ax[i] = ((double)data.at(i).ax.as_word)*przelicznik/100000000000;
ay[i] = ((double)data.at(i).ay.as_word)*(-1)*przelicznik/100000000000;
az[i] = ((double)data.at(i).az.as_word)*(-1)*przelicznik/100000000000;
gx[i] = ((double)data.at(i).gx.as_word)*przelicznik/100000000000;
gy[i] = ((double)data.at(i).gy.as_word)*(-1)*przelicznik/100000000000;
gz[i] = ((double)data.at(i).gz.as_word)*(-1)*przelicznik/100000000000;
}
if((newDataSize>0)&(triger == true))//get instValues 5 times per secound(depend of timmer interval)
{
(*instValues)[0] = ax[0];
(*instValues)[1] = ay[0];
(*instValues)[2] = az[0];
(*instValues)[3] = gx[0];
(*instValues)[4] = gy[0];
(*instValues)[5] = gz[0];
triger = false;
instValWindow->setInstValues(instValues);
}
// add new data to graphs
ui->accPlot->graph(0)->addData(key, ax);
ui->accPlot->graph(1)->addData(key, ay);
ui->accPlot->graph(2)->addData(key, az);
ui->gyroPlot->graph(0)->addData(key, gx);
ui->gyroPlot->graph(1)->addData(key, gy);
ui->gyroPlot->graph(2)->addData(key, gz);
// remove data of lines that's outside visible range:
ui->accPlot->graph(0)->removeDataBefore(keyPrescaler-memory);
ui->accPlot->graph(1)->removeDataBefore(keyPrescaler-memory);
ui->accPlot->graph(2)->removeDataBefore(keyPrescaler-memory);
// qDebug()<<"znacznik 4\n";
// rescale value (vertical) axis to fit the current data:
ui->accPlot->graph(0)->rescaleValueAxis();
ui->accPlot->graph(1)->rescaleValueAxis(true);
ui->accPlot->graph(2)->rescaleValueAxis(true);
// make key axis range scroll with the data (at a constant range size of 8):
ui->accPlot->xAxis->setRange(keyPrescaler, memory, Qt::AlignRight);
ui->accPlot->replot();
// remove data of lines that's outside visible range:
ui->gyroPlot->graph(0)->removeDataBefore(keyPrescaler-memory);
ui->gyroPlot->graph(1)->removeDataBefore(keyPrescaler-memory);
ui->gyroPlot->graph(2)->removeDataBefore(keyPrescaler-memory);
// rescale value (vertical) axis to fit the current data:
ui->gyroPlot->graph(0)->rescaleValueAxis();
ui->gyroPlot->graph(1)->rescaleValueAxis(true);
ui->gyroPlot->graph(2)->rescaleValueAxis(true);
// make key axis range scroll with the data (at a constant range size of 8):
ui->gyroPlot->xAxis->setRange(keyPrescaler, memory, Qt::AlignRight);
ui->gyroPlot->replot();
keyCounter += newDataSize;
MPS += newDataSize;
qDebug()<<"keyCounter:"<<keyCounter;
}
// This does a tri-linear interpolation of the derivatives at each of the 8
// grid points around the given point. This avoids additional calls to the
// function and speeds things up by a factor of 2 or so.
GLvoid MarchingCubes::surfaceNormal(GLvector &norm, GLfloat const& x, GLfloat const& y,
GLfloat const& z)
{
// needs offloading to the Grid class
GLvector V000, V001, V010, V011, V100, V101, V110, V111;
GLfloat gx(x/m_stepSize);
GLfloat gy(y/m_stepSize);
GLfloat gz(z/m_stepSize);
GLint x0( std::floor(gx) );
GLint y0( std::floor(gy) );
GLint z0( std::floor(gz) );
GLint x1(x0+1);
GLint y1(y0+1);
GLint z1(z0+1);
int i = x0; int j = y0; int k = z0;
V000.fX = (*m_grid)(i+1, j, k ) - (*m_grid)(i-1, j, k );
V000.fY = (*m_grid)(i, j+1, k ) - (*m_grid)(i, j-1, k );
V000.fZ = (*m_grid)(i, j, k+1) - (*m_grid)(i, j, k-1);
i = x0; j = y0; k = z1;
V001.fX = (*m_grid)(i+1, j, k ) - (*m_grid)(i-1, j, k );
V001.fY = (*m_grid)(i, j+1, k ) - (*m_grid)(i, j-1, k );
V001.fZ = (*m_grid)(i, j, k+1) - (*m_grid)(i, j, k-1);
i = x0; j = y1; k = z0;
V010.fX = (*m_grid)(i+1, j, k ) - (*m_grid)(i-1, j, k );
V010.fY = (*m_grid)(i, j+1, k ) - (*m_grid)(i, j-1, k );
V010.fZ = (*m_grid)(i, j, k+1) - (*m_grid)(i, j, k-1);
i = x0; j = y1; k = z1;
V011.fX = (*m_grid)(i+1, j, k ) - (*m_grid)(i-1, j, k );
V011.fY = (*m_grid)(i, j+1, k ) - (*m_grid)(i, j-1, k );
V011.fZ = (*m_grid)(i, j, k+1) - (*m_grid)(i, j, k-1);
i = x1; j = y0; k = z0;
V100.fX = (*m_grid)(i+1, j, k ) - (*m_grid)(i-1, j, k );
V100.fY = (*m_grid)(i, j+1, k ) - (*m_grid)(i, j-1, k );
V100.fZ = (*m_grid)(i, j, k+1) - (*m_grid)(i, j, k-1);
i = x1; j = y0; k = z1;
V101.fX = (*m_grid)(i+1, j, k ) - (*m_grid)(i-1, j, k );
V101.fY = (*m_grid)(i, j+1, k ) - (*m_grid)(i, j-1, k );
V101.fZ = (*m_grid)(i, j, k+1) - (*m_grid)(i, j, k-1);
i = x1; j = y1; k = z0;
V110.fX = (*m_grid)(i+1, j, k ) - (*m_grid)(i-1, j, k );
V110.fY = (*m_grid)(i, j+1, k ) - (*m_grid)(i, j-1, k );
V110.fZ = (*m_grid)(i, j, k+1) - (*m_grid)(i, j, k-1);
i = x1; j = y1; k = z1;
V111.fX = (*m_grid)(i+1, j, k ) - (*m_grid)(i-1, j, k );
V111.fY = (*m_grid)(i, j+1, k ) - (*m_grid)(i, j-1, k );
V111.fZ = (*m_grid)(i, j, k+1) - (*m_grid)(i, j, k-1);
GLvector p0;
p0.fX = gx - x0;
p0.fY = gy - y0;
p0.fZ = gz - z0;
GLvector p1;
p1.fX = x1 - gx;
p1.fY = y1 - gy;
p1.fZ = z1 - gz;
GLfloat dX, dY, dZ;
dX = V000.fX * p1.fX * p1.fY * p1.fZ
+ V001.fX * p1.fX * p1.fY * p0.fZ
+ V010.fX * p1.fX * p0.fY * p1.fZ
+ V011.fX * p1.fX * p0.fY * p0.fZ
+ V100.fX * p0.fX * p1.fY * p1.fZ
+ V101.fX * p0.fX * p1.fY * p0.fZ
+ V110.fX * p0.fX * p0.fY * p1.fZ
+ V111.fX * p0.fX * p0.fY * p0.fZ;
dY = V000.fY * p1.fX * p1.fY * p1.fZ
+ V001.fY * p1.fX * p1.fY * p0.fZ
+ V010.fY * p1.fX * p0.fY * p1.fZ
+ V011.fY * p1.fX * p0.fY * p0.fZ
+ V100.fY * p0.fX * p1.fY * p1.fZ
+ V101.fY * p0.fX * p1.fY * p0.fZ
+ V110.fY * p0.fX * p0.fY * p1.fZ
+ V111.fY * p0.fX * p0.fY * p0.fZ;
dZ = V000.fZ * p1.fX * p1.fY * p1.fZ
+ V001.fZ * p1.fX * p1.fY * p0.fZ
+ V010.fZ * p1.fX * p0.fY * p1.fZ
+ V011.fZ * p1.fX * p0.fY * p0.fZ
+ V100.fZ * p0.fX * p1.fY * p1.fZ
+ V101.fZ * p0.fX * p1.fY * p0.fZ
+ V110.fZ * p0.fX * p0.fY * p1.fZ
+ V111.fZ * p0.fX * p0.fY * p0.fZ;
norm.fX = -dX;
norm.fY = -dY;
norm.fZ = -dZ;
normalizeVector(norm, norm);
}
int main(int argc, char* argv[])
{
//init MPI
MPI_Init( &argc, &argv);
int rank, size;
MPI_Comm_rank( MPI_COMM_WORLD, &rank);
MPI_Comm_size( MPI_COMM_WORLD, &size);
//create a grid and some data
if( size != 4){ std::cerr << "Please run with 4 threads!\n"; return -1;}
double Tmax=2.*M_PI;
double NT = 10;
double dt = Tmax/NT;
dg::Grid1d<double> gx( 0, 2.*M_PI, 3, 10);
dg::Grid1d<double> gy( 0, 2.*M_PI, 3, 10);
dg::Grid1d<double> gz( 0, 2.*M_PI, 1, 20);
dg::Grid3d<double> g( gx, gy, gz);
std::string hello = "Hello world\n";
thrust::host_vector<double> data = dg::evaluate( function, g);
//create NetCDF File
int ncid;
file::NC_Error_Handle err;
MPI_Info info = MPI_INFO_NULL;
err = nc_create_par( "testmpi.nc", NC_NETCDF4|NC_MPIIO|NC_CLOBBER, MPI_COMM_WORLD, info, &ncid);
err = nc_put_att_text( ncid, NC_GLOBAL, "input", hello.size(), hello.data());
int dimids[4], tvarID;
err = file::define_dimensions( ncid, dimids, &tvarID, g);
int dataID;
err = nc_def_var( ncid, "data", NC_DOUBLE, 4, dimids, &dataID);
/* Write metadata to file. */
err = nc_enddef(ncid);
//err = nc_enddef( ncid);
size_t start[4] = {0, rank*g.Nz()/size, 0, 0};
size_t count[4] = {1, g.Nz()/size, g.Ny()*g.n(), g.Nx()*g.n()};
if( rank==0) std::cout<< "Write from "<< start[0]<< " "<<start[1]<<" "<<start[2]<<" "<<start[3]<<std::endl;
if( rank==0) std::cout<< "Number of elements "<<count[0]<< " "<<count[1]<<" "<<count[2]<<" "<<count[3]<<std::endl;
err = nc_var_par_access(ncid, dataID , NC_COLLECTIVE);
err = nc_var_par_access(ncid, tvarID , NC_COLLECTIVE);
size_t Tcount=1, Tstart=0;
double time = 0;
//err = nc_close(ncid);
for(unsigned i=0; i<=NT; i++)
{
if(rank==0)std::cout<<"Write timestep "<<i<<"\n";
//err = nc_open_par( "testmpi.nc", NC_WRITE|NC_MPIIO, MPI_COMM_WORLD, info, &ncid); //doesn't work I don't know why
time = i*dt;
Tstart = i;
data = dg::evaluate( function, g);
dg::blas1::scal( data, cos( time));
start[0] = i;
//write dataset (one timeslice)
err = nc_put_vara_double( ncid, dataID, start, count, data.data() + start[1]*count[2]*count[3]);
err = nc_put_vara_double( ncid, tvarID, &Tstart, &Tcount, &time);
//err = nc_close(ncid);
}
err = nc_close(ncid);
MPI_Finalize();
return 0;
}
int main(int argc, char* argv[])
{
stream::zip::GZIP gzip(stream::zip::OPEN_FOR_COMPRESS);
io::Blob<unsigned char> buffer;
gzip.Init();
FILE* file = fopen("C:\\pru.gz","wb");
buffer = gzip.Update((unsigned char*)"Hoal chavalote",13);
fwrite(buffer.get(),buffer.length(),1,file);
buffer = gzip.Finish();
fwrite(buffer.get(),buffer.length(),1,file);
fclose(file);
/*stream::zip::GZOutputStream fileOut("C:\\pru.gz");
fileOut.write((unsigned char*)"Hoal chavalote",14);
fileOut.close();*/
/*io::Blob<char> buff = stream::util::FileUtil::File2Buffer("C:\\pru.gz");
stream::zip::GZIP gzip2(stream::zip::OPEN_FOR_UNCOMPRESS);
gzip2.Init();
buffer = gzip2.Update((unsigned char*)buff.get(),buff.length()-10);
buffer = gzip2.Update((unsigned char*)buff.get()+buff.length()-10,10);
buffer = gzip2.Finish();*/
io::FileInputStream fileIn("c:\\pru.gz");
zip::GZIPInputStream gz(zip::OPEN_FOR_UNCOMPRESS,&fileIn);
while(gz.available())
{
/*unsigned char buffer4[100];
int readed = gz.read(buffer4,100);*/
int c = gz.read();
}
/*
CoInitialize(NULL);
LiteLog* log = util::LiteLog::getInstance();
log->traceOn("CON|HOla consola|5","Prueba");
log->trace(string("CON|HOla consola|5"));
std::string va = SystemInfo::getIEVersion();
std::string s = SystemInfo::readRegistryString("HKEY_CURRENT_USER\\Software\\HermesWeb\\Configuracion\\PathDocs");
try
{
auto_ptr<Connection> connection = Connection::createConnection("DSN=BakeMail");
auto_ptr<PreparedStatement> statement = connection->prepareStatement("SELECT * FROM servers WHERE id_server >= ?");
statement->setLong(1,3);
auto_ptr<ResultSet> result = statement->executeQuery();
result->moveFirst();
while(!result->eof())
{
cout << result->getString("server") << endl;
cout << result->getString("port") << endl;
cout << result->getString("user") << endl;
cout << result->getString("password") << endl;
cout << result->getString("check2") << endl << endl;
result->moveNext();
}
result->close();
auto_ptr<PreparedStatement> statement2 = connection->prepareStatement("INSERT INTO servers VALUES('','servidor','puerto','usuario','password12','not check')");
statement2->execute();
auto_ptr<PreparedStatement> statement3 = connection->prepareStatement("INSERT INTO servers VALUES('','servidor','?','usuario','password12','not check')");
for(int i = 30 ; i < 32 ; i++)
{
statement3->setLong(1,i);
statement3->execute();
}
connection->close();
}catch(exceptions::StreamException* e)
{
cout << e->what() << endl;
}
CoUninitialize();*/
return 0;
}
void grid_eval(cl::program_t& prog,
size_t block0,
size_t block1,
size_t refine) {
const size_t Nx = px.size();
const size_t Ny = py.size();
const size_t Nz = pz.size();
cl::ctx_t ctx(prog.context());
cl::queue_t queue(ctx, ctx.device(0));
init_mesh();
{
cl::kernel_t kern = prog.kernel("grid");
boost::scoped_array<uint8_t> out(new uint8_t[block0 * block0 * block0]);
boost::scoped_array<float> gx(new float[block0]);
boost::scoped_array<float> gy(new float[block0]);
boost::scoped_array<float> gz(new float[block0]);
cl::mem_t gx_mem =
ctx.create_buffer(CL_MEM_READ_ONLY, block0 * sizeof(float), NULL);
cl::mem_t gy_mem =
ctx.create_buffer(CL_MEM_READ_ONLY, block0 * sizeof(float), NULL);
cl::mem_t gz_mem =
ctx.create_buffer(CL_MEM_READ_ONLY, block0 * sizeof(float), NULL);
cl::mem_t out_mem =
ctx.create_buffer(CL_MEM_READ_WRITE, block0 * block0 * block0, NULL);
const size_t Py = block0;
const size_t Pz = block0 * block0;
kern.arg(0, gx_mem);
kern.arg(1, gy_mem);
kern.arg(2, gz_mem);
kern.arg(3, out_mem);
kern.arg(4, Py);
kern.arg(5, Pz);
for (size_t _z = 0; _z < Nz; _z += block0 - 1) {
const size_t Wz = std::min(block0, Nz - _z);
for (size_t i = 0; i < Wz; ++i)
gz[i] = (float)pz[_z + i];
queue.sync(cl::cmd_write_buffer(gz_mem, CL_FALSE, 0, Wz * sizeof(float),
gz.get()));
for (size_t _y = 0; _y < Ny; _y += block0 - 1) {
const size_t Wy = std::min(block0, Ny - _y);
for (size_t i = 0; i < Wy; ++i)
gy[i] = (float)py[_y + i];
queue.sync(cl::cmd_write_buffer(gy_mem, CL_FALSE, 0,
Wy * sizeof(float), gy.get()));
for (size_t _x = 0; _x < Nx; _x += block0 - 1) {
std::cerr << "block: " << _x << "," << _y << "," << _z << std::endl;
const size_t Wx = std::min(block0, Nx - _x);
for (size_t i = 0; i < Wx; ++i)
gx[i] = (float)px[_x + i];
queue.sync(cl::cmd_write_buffer(gx_mem, CL_FALSE, 0,
Wx * sizeof(float), gx.get()));
queue.sync(cl::cmd_task(kern).wrk_sz(Wx, Wy, Wz));
queue.sync(cl::cmd_read_buffer(
out_mem, CL_FALSE, 0, block0 * block0 * block0, out.get()));
for (size_t z = 0; z < Wz - 1; ++z) {
for (size_t y = 0; y < Wy - 1; ++y) {
for (size_t x = 0; x < Wx - 1; ++x) {
size_t bits = 0;
if (out[(x + 0) + (y + 0) * Py + (z + 0) * Pz])
bits |= 0x01;
if (out[(x + 1) + (y + 0) * Py + (z + 0) * Pz])
bits |= 0x02;
if (out[(x + 0) + (y + 1) * Py + (z + 0) * Pz])
bits |= 0x04;
if (out[(x + 1) + (y + 1) * Py + (z + 0) * Pz])
bits |= 0x08;
if (out[(x + 0) + (y + 0) * Py + (z + 1) * Pz])
bits |= 0x10;
if (out[(x + 1) + (y + 0) * Py + (z + 1) * Pz])
bits |= 0x20;
if (out[(x + 0) + (y + 1) * Py + (z + 1) * Pz])
bits |= 0x40;
if (out[(x + 1) + (y + 1) * Py + (z + 1) * Pz])
bits |= 0x80;
const uint8_t* row = mc_table[bits];
size_t n_tri = *row++;
if (n_tri == 0)
continue;
{
for (size_t t = 0; t < n_tri; ++t) {
uint8_t ea, eb, ec;
size_t va, vb, vc;
ea = *row++;
eb = *row++;
ec = *row++;
va = get_intersection(
decode_edge(_x + x, _y + y, _z + z, ea));
vb = get_intersection(
decode_edge(_x + x, _y + y, _z + z, eb));
vc = get_intersection(
decode_edge(_x + x, _y + y, _z + z, ec));
mesh->add_tri(va, vb, vc);
}
}
}
}
}
}
}
}
}
std::vector<std::pair<edgeint_t, size_t> > vert_calc;
vert_calc.reserve(int_idx.size());
for (typename edgeint_map_t::iterator i = int_idx.begin();
i != int_idx.end(); ++i) {
vert_calc.push_back(std::make_pair((*i).first, (*i).second));
}
{
boost::scoped_array<cl_float3> a(new cl_float3[block1]);
boost::scoped_array<cl_float3> b(new cl_float3[block1]);
boost::scoped_array<cl_float3> c(new cl_float3[block1]);
cl::mem_t a_mem =
ctx.create_buffer(CL_MEM_READ_ONLY, block1 * sizeof(cl_float3), NULL);
cl::mem_t b_mem =
ctx.create_buffer(CL_MEM_READ_ONLY, block1 * sizeof(cl_float3), NULL);
cl::mem_t c_mem = ctx.create_buffer(CL_MEM_READ_WRITE,
block1 * sizeof(cl_float3), NULL);
cl::kernel_t kern = prog.kernel("chop");
kern.arg(0, a_mem);
kern.arg(1, b_mem);
kern.arg(2, c_mem);
kern.arg(3, refine);
for (size_t i = 0; i < vert_calc.size(); i += block1) {
const size_t N = std::min(vert_calc.size() - i, block1);
for (size_t j = 0; j < N; ++j) {
edgeint_t& e = vert_calc[i + j].first;
v3d_t a_pos = position_of_vertex(e.a[0], e.a[1], e.a[2]);
v3d_t b_pos = position_of_vertex(e.b[0], e.b[1], e.b[2]);
a[j].x = (float)a_pos.x;
a[j].y = (float)a_pos.y;
a[j].z = (float)a_pos.z;
b[j].x = (float)b_pos.x;
b[j].y = (float)b_pos.y;
b[j].z = (float)b_pos.z;
}
queue.sync(cl::cmd_write_buffer(a_mem, CL_FALSE, 0,
N * sizeof(cl_float3), a.get()));
queue.sync(cl::cmd_write_buffer(b_mem, CL_FALSE, 0,
N * sizeof(cl_float3), b.get()));
queue.sync(cl::cmd_task(kern).wrk_sz(N));
queue.sync(cl::cmd_read_buffer(c_mem, CL_FALSE, 0,
N * sizeof(cl_float3), c.get()));
for (size_t j = 0; j < N; ++j) {
mesh->vertices[vert_calc[i + j].second].pos =
v3d_t::init(c[j].x, c[j].y, c[j].z);
}
}
}
}
double Pk(double k) /* P(k) power spectrum*/
{
double A=8312175.553892076015472412;
return (A * pow(BBKS(k),2.0) *pow(gz(0.0),2.0)* k );
}
double Dz(double z) /*D(Z) GrowthFactor */
{
return (gz(z) / (gz(0.0) * (1.0 +z)));
}
int main(int argc, char *argv[]) {
Teuchos::GlobalMPISession mpiSession(&argc, &argv);
// This little trick lets us print to std::cout only if a (dummy) command-line argument is provided.
int iprint = argc - 1;
Teuchos::RCP<std::ostream> outStream;
Teuchos::oblackholestream bhs; // outputs nothing
if (iprint > 0)
outStream = Teuchos::rcp(&std::cout, false);
else
outStream = Teuchos::rcp(&bhs, false);
int errorFlag = 0;
// *** Example body.
try {
// Initialize full objective function.
int nx = 256; // Set spatial discretization.
RealT alpha = 1.e-3; // Set penalty parameter.
RealT nu = 1e-2; // Viscosity parameter.
Objective_BurgersControl<RealT> obj(alpha,nx);
// Initialize equality constraints
EqualityConstraint_BurgersControl<RealT> con(nx,nu);
Teuchos::ParameterList list;
list.sublist("SimOpt").sublist("Solve").set("Residual Tolerance",1.e2*ROL::ROL_EPSILON);
con.setSolveParameters(list);
// Initialize iteration vectors.
Teuchos::RCP<std::vector<RealT> > z_rcp = Teuchos::rcp( new std::vector<RealT> (nx+2, 1.0) );
Teuchos::RCP<std::vector<RealT> > gz_rcp = Teuchos::rcp( new std::vector<RealT> (nx+2, 1.0) );
Teuchos::RCP<std::vector<RealT> > yz_rcp = Teuchos::rcp( new std::vector<RealT> (nx+2, 1.0) );
for (int i=0; i<nx+2; i++) {
(*z_rcp)[i] = (RealT)rand()/(RealT)RAND_MAX;
(*yz_rcp)[i] = (RealT)rand()/(RealT)RAND_MAX;
}
ROL::StdVector<RealT> z(z_rcp);
ROL::StdVector<RealT> gz(gz_rcp);
ROL::StdVector<RealT> yz(yz_rcp);
Teuchos::RCP<ROL::Vector<RealT> > zp = Teuchos::rcp(&z,false);
Teuchos::RCP<ROL::Vector<RealT> > gzp = Teuchos::rcp(&z,false);
Teuchos::RCP<ROL::Vector<RealT> > yzp = Teuchos::rcp(&yz,false);
Teuchos::RCP<std::vector<RealT> > u_rcp = Teuchos::rcp( new std::vector<RealT> (nx, 1.0) );
Teuchos::RCP<std::vector<RealT> > gu_rcp = Teuchos::rcp( new std::vector<RealT> (nx, 1.0) );
Teuchos::RCP<std::vector<RealT> > yu_rcp = Teuchos::rcp( new std::vector<RealT> (nx, 1.0) );
for (int i=0; i<nx; i++) {
(*u_rcp)[i] = (RealT)rand()/(RealT)RAND_MAX;
(*yu_rcp)[i] = (RealT)rand()/(RealT)RAND_MAX;
}
ROL::StdVector<RealT> u(u_rcp);
ROL::StdVector<RealT> gu(gu_rcp);
ROL::StdVector<RealT> yu(yu_rcp);
Teuchos::RCP<ROL::Vector<RealT> > up = Teuchos::rcp(&u,false);
Teuchos::RCP<ROL::Vector<RealT> > gup = Teuchos::rcp(&u,false);
Teuchos::RCP<ROL::Vector<RealT> > yup = Teuchos::rcp(&yu,false);
Teuchos::RCP<std::vector<RealT> > c_rcp = Teuchos::rcp( new std::vector<RealT> (nx, 1.0) );
Teuchos::RCP<std::vector<RealT> > l_rcp = Teuchos::rcp( new std::vector<RealT> (nx, 1.0) );
ROL::StdVector<RealT> c(c_rcp);
ROL::StdVector<RealT> l(l_rcp);
ROL::Vector_SimOpt<RealT> x(up,zp);
ROL::Vector_SimOpt<RealT> g(gup,gzp);
ROL::Vector_SimOpt<RealT> y(yup,yzp);
// Check derivatives.
obj.checkGradient(x,x,y,true,*outStream);
obj.checkHessVec(x,x,y,true,*outStream);
con.checkApplyJacobian(x,y,c,true,*outStream);
con.checkApplyAdjointJacobian(x,yu,c,x,true,*outStream);
con.checkApplyAdjointHessian(x,yu,y,x,true,*outStream);
// Initialize reduced objective function.
Teuchos::RCP<std::vector<RealT> > p_rcp = Teuchos::rcp( new std::vector<RealT> (nx, 1.0) );
ROL::StdVector<RealT> p(p_rcp);
Teuchos::RCP<ROL::Vector<RealT> > pp = Teuchos::rcp(&p,false);
Teuchos::RCP<ROL::Objective_SimOpt<RealT> > pobj = Teuchos::rcp(&obj,false);
Teuchos::RCP<ROL::EqualityConstraint_SimOpt<RealT> > pcon = Teuchos::rcp(&con,false);
ROL::Reduced_Objective_SimOpt<RealT> robj(pobj,pcon,up,pp);
// Check derivatives.
robj.checkGradient(z,z,yz,true,*outStream);
robj.checkHessVec(z,z,yz,true,*outStream);
// Get parameter list.
std::string filename = "input.xml";
Teuchos::RCP<Teuchos::ParameterList> parlist = Teuchos::rcp( new Teuchos::ParameterList() );
Teuchos::updateParametersFromXmlFile( filename, parlist.ptr() );
parlist->sublist("Status Test").set("Gradient Tolerance",1.e-14);
parlist->sublist("Status Test").set("Constraint Tolerance",1.e-14);
parlist->sublist("Status Test").set("Step Tolerance",1.e-16);
parlist->sublist("Status Test").set("Iteration Limit",1000);
// Declare ROL algorithm pointer.
Teuchos::RCP<ROL::Algorithm<RealT> > algo;
// Run optimization with Composite Step.
algo = Teuchos::rcp(new ROL::Algorithm<RealT>("Composite Step",*parlist,false));
RealT zerotol = std::sqrt(ROL::ROL_EPSILON);
z.zero();
con.solve(c,u,z,zerotol);
c.zero(); l.zero();
algo->run(x, g, l, c, obj, con, true, *outStream);
Teuchos::RCP<ROL::Vector<RealT> > zCS = z.clone();
zCS->set(z);
// Run Optimization with Trust-Region algorithm.
algo = Teuchos::rcp(new ROL::Algorithm<RealT>("Trust Region",*parlist,false));
z.zero();
algo->run(z,robj,true,*outStream);
// Check solutions.
Teuchos::RCP<ROL::Vector<RealT> > err = z.clone();
err->set(*zCS); err->axpy(-1.,z);
errorFlag += ((err->norm()) > 1.e-8) ? 1 : 0;
}
catch (std::logic_error err) {
*outStream << err.what() << "\n";
errorFlag = -1000;
}; // end try
if (errorFlag != 0)
std::cout << "End Result: TEST FAILED\n";
else
std::cout << "End Result: TEST PASSED\n";
return 0;
}
double *BP_Test(double *resid, int obs, double** X, int nvar, bool InclConst)
{
DenseVector e(resid, obs, false), g(obs), sqvar(obs);
DenseVector *x = new DenseVector [nvar];
int i = 0, j = 0;
double ns = 0;
// Assign x = X * X
x[0].alloc(obs);
for (j = 0; j < obs; j++) {
x[0].setAt(j, 1.0);
}
for (i = 1; i < nvar; i++) {
if (InclConst) {
x[i].absorb(X[i], obs);
} else {
x[i].absorb(X[i - 1], obs);
}
ns = x[i].norm();
for (j = 0; j < obs; j++) {
x[i].setAt(j, geoda_sqr(x[i].getValue(j) / sqrt(ns)));
}
}
double **cov = new double * [nvar];
for (i = 0; i < nvar; i++)
alloc(cov[i], nvar);
// use SVD to compute inverse(Z'Z)
// use dgesvd_
char jobu = 'S', jobvt = 'S';
long int m = obs, n = nvar;
long int lda = obs, ldu = obs, ldvt = nvar, lwork = 5 * obs, info = 0;
double *a = new double [obs * nvar];
double *s = new double [nvar];
double *u = new double [ldu * nvar];
double *vt = new double [ldvt * nvar];
double *work = new double [lwork];
for (i = 0; i < obs; i++) {
for (j = 0; j < nvar; j++) {
a[i + obs * j] = x[j].getValue(i);
}
}
// use __WXMAC__ to call vecLib
//#ifdef WORDS_BIGENDIAN
#ifdef __WXMAC__MMM
dgesvd_(&jobu, &jobvt, &m, &n, a, &lda, s, u, &ldu, vt, &ldvt, work, &lwork, &info);
#else
dgesvd_(&jobu, &jobvt, (integer*)&m, (integer*)&n, (doublereal*)a, (integer*)&lda, (doublereal*)s, (doublereal*)u, (integer*)&ldu, (doublereal*)vt, (integer*)&ldvt, (doublereal*)work, (integer*)&lwork, (integer*)&info);
#endif
if (!info) {
// (z'z)^(-1) = VW^(-2)V'
for (i = 0; i < nvar; i++) {
for (j = 0; j < nvar; j++) {
for (m = 0; m < nvar; m++) {
cov[i][j] += (vt[i * nvar + m] * vt[m + j * nvar]) / (s[m] * s[m]);
}
}
}
} else {
// do nothing
}
double mse = e.norm() / obs;
// compute gi
for (j = 0; j < obs; j++) {
double e2 = geoda_sqr(e.getValue(j));
g.setAt(j, e2 - mse);
sqvar.setAt(j, geoda_sqr(e2 - mse));
}
double mean = sqvar.sum() / obs;
DenseVector gz(nvar), gzizz(nvar);
for (i = 0; i < nvar; i++)
gz.setAt(i, g.product(x[i])); // gz = g'z (1 x expl)
gz.squareTimesColumn(gzizz, cov); // gzizz = g'z * inv(cov)
double bp = gz.product(gzizz); // bp = g'z[(z'z)^-1]z'g
double *rslt = new double [6];
rslt[0] = 1. / (2 * geoda_sqr(mse)) * bp; // Breusch-Pagan
rslt[1] = InclConst ? nvar - 1 : nvar;
rslt[2] = gammp(rslt[1] / 2.0, rslt[0] / 2.0);
rslt[3] = (1.0 / mean) * bp; // Koenker-Basset
rslt[4] = rslt[1];
rslt[5] = gammp(rslt[1] / 2.0, rslt[3] / 2.0);
release(&x);
release(&cov);
return rslt;
}
