Beispiel #1
0
bool FASTA_format::get_seq(vector<char>& id, vector<Letter>& seq, Compressed_istream & s) const
{
	if (!have_char(s, '>'))
		return false;
	id.clear();
	seq.clear();
	copy_line(s, id, Raw_text());
	copy_until(s, '>', seq);
	return true;
}
Beispiel #2
0
bool FASTQ_format::get_seq(vector<char>& id, vector<Letter>& seq, Compressed_istream & s) const
{
	if (!have_char(s, '@'))
		return false;
	id.clear();
	seq.clear();
	copy_line(s, id, Raw_text());
	copy_line(s, seq, Sequence_data());
	skip_char(s, '+');
	skip_line(s);
	skip_line(s);
	return true;
}
Beispiel #3
0
void squeezz1(char s[], char t[], char tmp[])
{
    int i, k;
    k = 0;
    for (i = 0; s[i] != '\0'; i++)
    {
        if (have_char(s[i], t))
            ;
        else
            tmp[k++] = s[i];  
    }
    tmp[k] = '\0';
}
Beispiel #4
0
void squeeze(char s[], char t[])
{
	int i, j;
	i = j = 0;
	for(i = 0; s[i]!='\0'; ++i)
	{
		if (have_char(s[i], t))
		    s[i--] = s[++j];
		else
		    j = i;
	}
	s[j] = '\0';
}