char *hgFindSpecSettingOrDefault(struct hgFindSpec *hfs, char *name,
char *defaultVal)
/* Return setting string, or defaultVal if none exists */
{
char *val = hgFindSpecSetting(hfs, name);
return (val == NULL ? defaultVal : val);
}
static void checkXrefQueryFormat(struct hgFindSpec *hfs)
/* Make sure xrefQuery looks right and jives with searchMethod. */
{
if (isNotEmpty(hfs->xrefQuery) &&
!hgFindSpecSetting(hfs, "dontCheckXrefQueryFormat"))
{
if (! regexMatchNoCase(hfs->xrefQuery, xrefQueryFormatRegex))
errAbort("hfsPolish: search %s: xrefQuery needs to be of the format "
"\"select field1,field2 from %%s where field2 like '%%s'\" "
"(for prefix, '%%s%%%%'; for exact, '%%%%%%s%%%%'), "
"but instead is this:\n%s",
hfs->searchName, hfs->xrefQuery);
if (sameString(hfs->searchMethod, "fuzzy") &&
!endsWith(hfs->xrefQuery, fuzzyTermFormat))
errAbort("hfsPolish: search %s: searchMethod is fuzzy so xrefQuery "
"needs to end with %s.",
hfs->searchName, fuzzyTermFormat);
else if (sameString(hfs->searchMethod, "prefix") &&
!regexMatchNoCase(hfs->xrefQuery, prefixTermFormatRegex))
errAbort("hfsPolish: search %s: searchMethod is prefix so xrefQuery "
"needs to end with %s.",
hfs->searchName, prefixTermFormat);
else if (sameString(hfs->searchMethod, "exact") &&
!regexMatchNoCase(hfs->xrefQuery, exactTermFormatRegex))
errAbort("hfsPolish: search %s: searchMethod is exact so xrefQuery "
" needs to end with %s.",
hfs->searchName, exactTermFormat);
}
}
char *hgFindSpecRequiredSetting(struct hgFindSpec *hfs, char *name)
/* Return setting string or squawk and die. */
{
char *ret = hgFindSpecSetting(hfs, name);
if (ret == NULL)
errAbort("Missing required %s setting in %s (%s) search spec",
name, hfs->searchTable, hfs->searchName);
return ret;
}
static struct hgFindSpec * pruneRelease(struct hgFindSpec *hfsList)
/* Prune out alternate track entries for another release */
{
/* Build up list that only includes things in this release. Release
* can be inherited from parents. */
struct hgFindSpec *hfs;
struct hgFindSpec *relList = NULL;
struct hash *haveHash = hashNew(3);
while ((hfs = slPopHead(&hfsList)) != NULL)
{
char *rel = hgFindSpecSetting(hfs, "release");
unsigned hfsRelBits = buildReleaseBits(rel);
if (hfsRelBits & releaseBit)
{
/* we want to include this track, check to see if we already have it */
struct hashEl *hel;
if ((hel = hashLookup(haveHash, hfs->searchName)) != NULL)
{
// TODO restore this warning to errAbort
// This has been temporarily changed to a warning to avoid everybody being held up.
char *one = (char *)hel->val;
char *other = release;
if (!one)
one = "none";
if (!other)
other = "none";
warn("ERROR: found two or more copies of %s: one with release %s, the other %s\n",
hfs->searchName, one, other);
}
else
{
hashAdd(haveHash, hfs->searchName, rel);
hashRemove(hfs->settingsHash, "release");
slAddHead(&relList, hfs);
}
}
else
verbose(3,"pruneRelease: removing '%s', release: '%s' != '%s'\n",
hfs->searchName, rel, release);
}
freeHash(&haveHash);
return relList;
}
