/**
* \brief Constructor.
*/
tunnel::player_pending_action::player_pending_action( const std::string & str )
{
std::vector<std::string> params;
claw::text::split(params, str, '|');
if ( params.size() == 5 )
{
size_t t;
std::istringstream iss0(params[0]);
iss0 >> t;
if ( t == start_action )
pending_type = start_action;
else if ( t == stop_action )
pending_type = stop_action;
else
pending_type = do_action;
std::istringstream iss1(params[1]);
iss1 >> date;
std::istringstream iss2(params[2]);
iss2 >> player_index;
std::istringstream iss3(params[3]);
iss3 >> action;
std::istringstream iss4(params[4]);
iss4 >> duration;
}
string* split_string(string temp_str, int &num_sub_strings)
{
int ct = 0;
istringstream iss1(temp_str);
string sub;
do
{
iss1 >> sub;
ct++;
} while (iss1);
string* ptr_str = new string[ct];
ct=0;
istringstream iss2(temp_str);
do
{
iss2 >> ptr_str[ct];
ct++;
} while (iss2);
num_sub_strings = ct-1;
return ptr_str;
}
float* MCNeuronSim::readVtrace(std::string fileName, int nLines, bool deleteFile){
float* vTrace = new float[nLines];
std::ifstream infile(fileName.c_str());
std::string file_line;
std::string delimiter = ";";
int i=0;
while (std::getline(infile, file_line))
{
if(i>=nLines){
break;
//std::cout<<"More lines read than expected from "+patch::to_string(fileName)+"--nlines read:"+patch::to_string(i+1);
}
std::istringstream iss1(file_line);
std::string line;
iss1 >> line;
//tokenize and convert to float
std::string token =line.substr(0, line.find(delimiter));
std::istringstream iss2(token);
iss2 >> vTrace[i++];
//std::cout<<vTrace[i-1]<<"\n";
}
if(deleteFile)
std::remove(fileName.c_str());
return vTrace;
}
void test2() {
geryon::server::GUniformMemoryPool pool(BUF_SZ, 1, 0);
std::vector<geryon::server::GBufferHandler> buffers;
geryon::server::GIstreambuff buff1(buffers, 0, 0);
std::istream iss1(&buff1);
}
void start(int &m, int &l, int &w, int &i, bool &c)
{
string in;
cout << "Algorytm ewolucyjny. Podaj wartosci parametrow." << endl;
cout << "mi: " << endl;
cin >> in;
istringstream iss(in);
iss >> m;
cout << "lambda: " << endl;
cin >> in;
istringstream iss1(in);
iss1 >> l;
cout << "wymiar: " << endl;
cin >> in;
istringstream iss2(in);
iss2 >> w;
cout << "liczba iteracji: " << endl;
cin >> in;
istringstream iss3(in);
iss3 >> i;
cout << "czy drukowac wyniki czesciowe? (t/n): " << endl;
cin >> in;
if(in == "t")
c = true;
else
c = false;
}
void test_basic_with_assign_template(
ForwardIterator first,ForwardIterator last
BOOST_APPEND_EXPLICIT_TEMPLATE_TYPE(Flyweight))
{
typedef typename Flyweight::value_type value_type;
ForwardIterator it;
test_basic_template<Flyweight>(first,last);
for(it=first;it!=last;++it){
/* value construction */
value_type v(*it);
Flyweight f1(v);
Flyweight f2(f1.get());
BOOST_TEST(f1.get()==v);
BOOST_TEST(f2.get()==v);
BOOST_TEST(f1==f2);
#if !defined(BOOST_NO_CXX11_RVALUE_REFERENCES)
value_type v1(v);
const value_type v2(v);
Flyweight fr1(std::move(v1));
Flyweight fr2(std::move(v2));
BOOST_TEST(fr1==v);
BOOST_TEST(fr2==v);
#endif
/* value assignment */
Flyweight f3,f4;
f3=v;
f4=f1.get();
BOOST_TEST(f2.get()==v);
BOOST_TEST(f3.get()==v);
BOOST_TEST(f2==f3);
#if !defined(BOOST_NO_CXX11_RVALUE_REFERENCES)
Flyweight fr3;
fr3=value_type(*it);
BOOST_TEST(fr3.get()==value_type(*it));
#endif
/* specialized algorithms */
std::ostringstream oss1;
oss1<<f1;
std::istringstream iss1(oss1.str());
Flyweight f5;
iss1>>f5;
BOOST_TEST(f5==f1);
}
}
bool PMCSQS_Scorer::read_sqs_models(Config *_config, char *file)
{
config_ = _config;
string path;
path = config_->get_resource_dir() + "/" + string(file);
ifstream in_stream(path.c_str(),ios::in);
if (! in_stream.good())
{
cout << "Warning: couldn't open sqs model for reading: " << path << endl;
return false;
}
int i;
char buff[512];
int num_sqs_charges=-1;
in_stream.getline(buff,256);
istringstream iss(buff);
iss >> num_sqs_charges;
in_stream.getline(buff,256);
istringstream iss1(buff);
int numSizes=0;
iss1 >> numSizes;
this->sqsMassThresholds_.resize(numSizes,POS_INF);
for (i=0; i<numSizes; i++)
iss1 >> sqsMassThresholds_[i];
this->sqs_correction_factors.resize(num_sqs_charges);
this->sqs_mult_factors.resize(num_sqs_charges);
for (i=0; i<num_sqs_charges; i++)
{
in_stream.getline(buff,512);
istringstream iss(buff);
int num_threshes = 0;
iss >> num_threshes;
if (num_threshes>0)
{
sqs_correction_factors[i].resize(num_threshes+1,0);
sqs_mult_factors[i].resize(num_threshes+1,1.0);
int j;
for (j=0; j<=num_threshes; j++)
iss >> sqs_correction_factors[i][j] >> sqs_mult_factors[i][j];
}
}
Cube::Cube(Ogre::SceneManager& mSceneMgr, Ogre::Real x, Ogre::Real y, Ogre::Real z) {
Ogre::SceneManager::MovableObjectIterator it= mSceneMgr.getMovableObjectIterator("Entity");
Ogre::Real lowestY = 10;
_mSceneMgr = &mSceneMgr;
while (it.hasMoreElements())
{
std::string _name = it.getNext()->getName();
if (_name != "GroundEntity" && _name != "RoboOgre") {
try {
std::vector<std::string> _temp = Cube::split(_name, ':');
// 0:'Cube' 1:'x' 2:'y' 3:'z'
if (_temp[0] == "Cube") {
int _tempX;
std::istringstream iss1(_temp[1]);
iss1 >> _tempX;
int _tempY;
std::istringstream iss2(_temp[2]);
iss2 >> _tempY;
int _tempZ;
std::istringstream iss3(_temp[3]);
iss3 >> _tempZ;
if (_tempX > (x - 25) && _tempX < (x + 25) && _tempZ > (z - 25) && _tempZ < (z + 25))
{
if (lowestY <= _tempY) lowestY = _tempY+25;
}
}
}
catch (...) { }
}
}
_name = "Cube:"+Ogre::StringConverter::toString(x,6,0, '_',0) +":"+ Ogre::StringConverter::toString(lowestY,6,0, '_',0)+":"+Ogre::StringConverter::toString(z,6,0, '_',0);
_cubeEntity = mSceneMgr.createEntity(_name, "cube.mesh");
_cubeNode = mSceneMgr.getRootSceneNode()->createChildSceneNode();
_cubeNode->attachObject(_cubeEntity);
_cubeNode->showBoundingBox(true);
_cubeEntity->setCastShadows(true);
_cubeNode->setPosition(x, lowestY, z);
_cubeNode->scale(CUBE_SCALE, CUBE_SCALE, CUBE_SCALE);
}
// -----------------------------------------------------------------------------
// -----------------------------------------------------------------------------
size_t ChValidation::ReadDataFile(const std::string& filename,
char delim,
Headers& headers,
Data& data)
{
std::ifstream ifile(filename.c_str());
std::string line;
// Count the number of lines in the file then rewind the input file stream.
size_t num_lines = std::count(std::istreambuf_iterator<char>(ifile),
std::istreambuf_iterator<char>(), '\n');
ifile.seekg(0, ifile.beg);
size_t num_data_points = num_lines - 3;
// Skip the first two lines.
std::getline(ifile, line);
std::getline(ifile, line);
// Read the line with column headers.
std::getline(ifile, line);
std::stringstream iss1(line);
std::string col_header = "";
while (std::getline(iss1, col_header, delim))
headers.push_back(col_header);
size_t num_cols = headers.size();
// Resize data
data.resize(num_cols);
for (size_t col = 0; col < num_cols; col++)
data[col].resize(num_data_points);
// Read the actual data, one line at a time.
size_t row = 0;
while (std::getline(ifile, line)) {
std::stringstream iss(line);
for (size_t col = 0; col < num_cols; col++)
iss >> data[col][row];
row++;
}
return row;
}
RTC::ReturnCode_t ObjectRTC::onInitialize()
{
// Registration: InPort/OutPort/Service
// <rtc-template block="registration">
// Set InPort buffers
// Set OutPort buffer
addOutPort("pose", m_poseOut);
// Set service provider to Ports
// Set service consumers to Ports
// Set CORBA Service Ports
// </rtc-template>
// <rtc-template block="bind_config">
// Bind variables and configuration variable
bindParameter("objectName", m_objectName, "none");
//bindParameter("geometry_offset", m_offsetStr, "0,0,0,0,0,0");
//bindParameter("maxObject", m_maxObject, "30.0");
//bindParameter("minObject", m_minObject, "0.3");
// </rtc-template>
std::cout << " - Initializing ObjectRTC: " << m_properties.getProperty("conf.default.objectName") << std::endl;
/*
std::string tubehandle = m_properties.getProperty("conf.__innerparam.tubeHandle");
std::istringstream iss0(tubehandle);
iss0 >> m_tubeHandle;
std::cout << " -- TubeHandle = " << m_tubeHandle << std::endl;
*/
std::string objhandle = m_properties.getProperty("conf.__innerparam.objectHandle");
std::istringstream iss1(objhandle);
iss1 >> m_objectHandle;
/*
std::string buflength = m_properties.getProperty("conf.__innerparam.bufSize");
std::istringstream iss2(buflength);
iss2 >> m_bufferSize;
m_pBuffer = new uint8_t[m_bufferSize];
*/
return RTC::RTC_OK;
}
void test_basic_with_assign_template(
ForwardIterator first,ForwardIterator last
BOOST_APPEND_EXPLICIT_TEMPLATE_TYPE(Flyweight))
{
typedef typename Flyweight::value_type value_type;
ForwardIterator it;
test_basic_template<Flyweight>(first,last);
for(it=first;it!=last;++it){
/* value construction */
value_type v(*it);
Flyweight f1(v);
Flyweight f2(f1.get());
BOOST_TEST(f1.get()==v);
BOOST_TEST(f2.get()==v);
BOOST_TEST(f1==f2);
/* value assignment */
Flyweight f3,f4;
f3=v;
f4=f1.get();
BOOST_TEST(f2.get()==v);
BOOST_TEST(f3.get()==v);
BOOST_TEST(f2==f3);
/* specialized algorithms */
std::ostringstream oss1;
oss1<<f1;
std::istringstream iss1(oss1.str());
Flyweight f5;
iss1>>f5;
BOOST_TEST(f5==f1);
}
}
// -----------------------------------------------------------------------------
// ReadCheckpoint
//
//
// -----------------------------------------------------------------------------
void ReadCheckpoint(ChSystem* system,
const std::string& filename)
{
// Open input file stream
std::ifstream ifile(filename.c_str());
std::string line;
while (std::getline(ifile, line)) {
std::istringstream iss1(line);
// Read body type, Id, flags
int btype, bid, bfixed, bcollide;
iss1 >> btype >> bid >> bfixed >> bcollide;
// Read body mass and inertia
double mass;
ChVector<> inertiaXX;
iss1 >> mass >> inertiaXX.x >> inertiaXX.y >> inertiaXX.z;
// Read body position, orientation, and their time derivatives
ChVector<> bpos, bpos_dt;
ChQuaternion<> brot, brot_dt;
iss1 >> bpos.x >> bpos.y >> bpos.z >> brot.e0 >> brot.e1 >> brot.e2 >> brot.e3;
iss1 >> bpos_dt.x >> bpos_dt.y >> bpos_dt.z >> brot_dt.e0 >> brot_dt.e1 >> brot_dt.e2 >> brot_dt.e3;
// Get the next line in the file (material properties)
std::getline(ifile, line);
std::istringstream iss2(line);
// Create a body of the appropriate type, read and apply material properties
ChBody* body;
if (btype == 0) {
body = new ChBody(ChBody::DVI);
ChSharedPtr<ChMaterialSurface> mat = body->GetMaterialSurface();
iss2 >> mat->static_friction >> mat->sliding_friction >> mat->rolling_friction >> mat->spinning_friction;
iss2 >> mat->restitution >> mat->cohesion >> mat->dampingf;
iss2 >> mat->compliance >> mat->complianceT >> mat->complianceRoll >> mat->complianceSpin;
} else {
int IntegerRangeListValidator<Integral>::breakRange(
std::string &range, std::string &from, std::string &to)
{
from.clear();
to.clear();
std::string::size_type loc = range.find(rangeDelim_);
if (loc == std::string::npos){
from = range;
}
else{
from = range.substr(0, loc);
to = range.substr(loc+1, range.size());
}
long a, b;
std::istringstream iss1(from);
iss1 >> a;
b = a;
if (to.size() > 0){
std::istringstream iss2(to);
iss2 >> b;
if (b < a)
std::swap(from,to);
}
void define_data(IloEnv env) {
string line(" ");
ifstream myfile ("/home/DavidRC/data.txt");
int i=0;
int j=0;
int x=0;
int y=0;
if (myfile.is_open())
{
i=0;
j=0;
getline(myfile,line);
n=atoi(line.c_str());
IloNumArray l(env,n);
NumMatrix w(env,n);
for(i=0; i<n; i++)
{
w[i]=IloNumArray(env,n);
}
getline (myfile,line);
istringstream iss1(line);
while (iss1 && j<n)
{
string subs;
iss1 >> subs;
string temp=subs;
if(temp.compare("")==0)
{
continue;
}
else
{
l[j]=atoi(subs.c_str());
}
j++;
}
exit(1);
i=0;
j=0;
while ( getline (myfile,line) && i<n)
{
istringstream iss2(line);
j=0;
while (iss2 && j<n)
{
string subs;
iss2 >> subs;
string temp=subs;
if(temp.compare("")==0)
{
continue;
j++;
}
else
{
w[i][j]=atoi(subs.c_str());
j++;
}
}
i++;
}
m=atoi( line.c_str() );
IloNumArray c(env,m);
NumMatrix d(env,m);
for(i=0; i<m; i++)
{
d[i]=IloNumArray(env,m);
}
i=0;
j=0;
getline (myfile,line);
istringstream iss3(line);
while (iss3 && j<m)
{
string subs;
iss3 >> subs;
string temp=subs;
if(temp.compare("")==0)
{
continue;
}
else
{
c[j]=atoi(subs.c_str());
}
j++;
}
i=0;
j=0;
while ( getline (myfile,line) && i<m)
{
istringstream iss4(line);
j=0;
while (iss4 && j<m)
{
string subs;
iss4 >> subs;
string temp=subs;
if(temp.compare("")==0)
{
continue;
}
else
{
d[i][j]=atoi(subs.c_str());
}
j++;
}
i++;
}
myfile.close();
}
//NOTE: The file index starts at 1, but we'll subtract one
// to match vector index.
void readInFromFile( vector<Node> &g, string fileName )
{
//clear g
g = {};
Node emptyNode;
ifstream inFile( fileName, ios::in );
if ( !inFile )
{
cerr << endl << "File could not be opened." << endl << endl;
exit(1);
}
string line;
while( getline(inFile, line) )
{
istringstream iss1(line);
string tab;
string sindex;
long index;
getline(iss1, sindex, '\t');
istringstream issIndex(sindex);
issIndex >> index;
//Make index match array index
--index;
//cout << "Index: " << index << endl;
//Add a node
g.push_back(emptyNode);
while( getline(iss1, tab, '\t') )
{
//extra crap (like space or newline) in last iteration
if( tab.length() >= 3 )
{
istringstream iss2(tab);
string comma;
int counter = 0;
long iVert = -1000;
long edgeDist = -1000;
while( getline(iss2, comma, ',') )
{
istringstream iss3(comma);
if( counter == 0 )
{
iss3 >> iVert;
//Make vertex match array index
--iVert;
counter++;
}
else if( counter == 1 )
{
iss3 >> edgeDist;
counter++;
}
else
bool PMCSQS_Scorer::read_pmc_rank_models(Config *_config, char *file_name)
{
config = _config;
string path = config->get_resource_dir() + "/" + file_name;
ifstream in_stream(path.c_str(),ios::in);
if (! in_stream.good())
{
cout << "Warning: couldn't open pmc rank model for reading: " << path << endl;
return false;
}
char buff[512];
int num_charges=-1;
in_stream.getline(buff,256);
istringstream iss1(buff);
frag_pair_sum_offset=NEG_INF;
bin_increment=NEG_INF;
iss1 >> bin_increment >> this->frag_pair_sum_offset;
if (frag_pair_sum_offset==NEG_INF || bin_increment == NEG_INF)
{
cout << "Error in pmc model file!" << endl;
exit(1);
}
in_stream.getline(buff,256);
istringstream iss(buff);
iss >> num_charges;
max_model_charge=num_charges-1;
pmc_rank_models.resize(num_charges);
pmc_rank_mass_thresholds.resize(num_charges);
pmc_charge_mz_biases.resize(num_charges);
int i;
for (i=0; i<num_charges; i++)
{
in_stream.getline(buff,256);
istringstream iss(buff);
int num_threshes=0;
iss >> num_threshes;
pmc_rank_mass_thresholds[i].resize(num_threshes,NEG_INF);
int j;
for (j=0; j<num_threshes; j++)
iss >> pmc_rank_mass_thresholds[i][j];
}
for (i=0; i<num_charges; i++)
{
in_stream.getline(buff,256);
istringstream iss(buff);
int num_biases=0;
iss >> num_biases;
pmc_charge_mz_biases[i].resize(num_biases,NEG_INF);
int j;
for (j=0; j<num_biases; j++)
iss >> pmc_charge_mz_biases[i][j];
}
// read Boost models
for (i=0; i<num_charges; i++)
{
in_stream.getline(buff,256);
istringstream iss(buff);
int num_models=-1;
iss >> num_models;
if (num_models<0)
{
cout << "Error: bad parsing of PMCR model file!" << endl;
exit(0);
}
pmc_rank_models[i].resize(num_models,NULL);
int j;
for (j=0; j<num_models; j++)
{
pmc_rank_models[i][j]=new RankBoostModel;
pmc_rank_models[i][j]->read_rankboost_model(in_stream);
}
}
in_stream.close();
// this->write_pmc_rank_models("XXX.txt");
this->ind_initialized_pmcr = true;
return true;
}
void ComponentFactory::ParseType(Serializer& _ser, tinyxml2::XMLElement* _element)
{
const natChar *type_str = _element->Attribute("type");
ref_t type = Hash::Compute(type_str);
if(type == s_type_ref_t)
{
const natChar* value = _element->Attribute("value");
ref_t ref;
if(strcmp(value, "") != 0)
{
ref = Hash::Compute(value);
}
else
{
ref = 0;
}
_ser << ref;
}
else if(type == s_type_tex_t)
{
const natChar* value = _element->Attribute("value");
ref_t ref;
if(strcmp(value, "") != 0)
{
ref = Hash::Compute(value);
// add it to preload
TextureManager* texturemanager = GetEntity()->GetKernel()->GetLayer(Layer::s_LayerManager)->GetRootEntity()->GetComponent<TextureManager>();
texturemanager->Preload(value);
}
else
{
ref = 0;
}
_ser << ref;
}
else if(type == s_type_natBool)
{
natBool value = _element->BoolAttribute("value");
_ser << value;
}
else if(type == s_type_natChar)
{
const natChar* value = _element->Attribute("value");
natChar value0 = value[0];
_ser << value0;
}
else if(type == s_type_natU8)
{
const natU8* value = reinterpret_cast<const natU8*>(_element->Attribute("value"));
natU8 value0 = value[0];
_ser << value0;
}
else if(type == s_type_natS8)
{
const natS8* value = reinterpret_cast<const natS8*>(_element->Attribute("value"));
natS8 value0 = value[0];
_ser << value0;
}
else if(type == s_type_natU16)
{
natU16 value = static_cast<natU16>(_element->IntAttribute("value"));
_ser << value;
}
else if(type == s_type_natS16)
{
natS16 value = static_cast<natS16>(_element->IntAttribute("value"));
_ser << value;
}
else if(type == s_type_natU32)
{
natU32 value = static_cast<natU32>(_element->IntAttribute("value"));
_ser << value;
}
else if(type == s_type_natS32)
{
natS32 value = static_cast<natS32>(_element->IntAttribute("value"));
_ser << value;
}
else if(type == s_type_natU64)
{
natU64 value = static_cast<natU64>(_element->IntAttribute("value"));
_ser << value;
}
else if(type == s_type_natS64)
{
natS64 value = static_cast<natS64>(_element->IntAttribute("value"));
_ser << value;
}
else if(type == s_type_natF32)
{
natF32 value = static_cast<natF32>(_element->FloatAttribute("value"));
_ser << value;
}
else if(type == s_type_natF64)
{
natF64 value = static_cast<natF64>(_element->DoubleAttribute("value"));
_ser << value;
}
else if(type == s_type_std_string)
{
const natChar* value = _element->Attribute("value");
std::string str = value;
_ser << str;
}
else if(type == s_type_glm_vec2)
{
// ugly stl
const natChar* value = _element->Attribute("value");
std::istringstream iss(value);
std::string value0;
std::string value1;
glm::vec2 ret;
std::getline(iss, value0, ' ');
if(!std::getline(iss, value1, ' '))
{
value1 = "0";
}
std::istringstream iss0(value0);
iss0 >> ret.x;
std::istringstream iss1(value1);
iss1 >> ret.y;
_ser << ret;
}
else if(type == s_type_glm_vec3)
void test2Gaps() {
geryon::server::GUniformMemoryPool pool(BUF_SZ, 1, 0);
std::vector<geryon::server::GBufferHandler> buffers;
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(0).get().buffer()[0] = 'a'; //0
buffers.at(0).get().buffer()[1] = 'X'; //1
buffers.at(0).get().buffer()[2] = 'a'; //2
buffers.at(0).get().setMarker(3);
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(1).get().buffer()[0] = 'b'; //3
buffers.at(1).get().buffer()[1] = 'b'; //4
buffers.at(1).get().buffer()[2] = 'X'; //5
buffers.at(1).get().buffer()[3] = 'X'; //6
buffers.at(1).get().buffer()[4] = 'b'; //7
buffers.at(1).get().setMarker(5);
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(2).get().buffer()[0] = 'c'; //8
buffers.at(2).get().buffer()[1] = 'c'; //9
buffers.at(2).get().buffer()[2] = 'c'; //10
buffers.at(2).get().buffer()[3] = 'X'; //11
buffers.at(2).get().setMarker(4);
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(3).get().buffer()[0] = 'X'; //12
buffers.at(3).get().buffer()[1] = 'd'; //13
buffers.at(3).get().buffer()[2] = 'd'; //14
buffers.at(3).get().buffer()[3] = 'X'; //15
buffers.at(3).get().setMarker(4);
//1st test : aabbbcccdd
geryon::server::GIstreambuff buff1(buffers);
buff1.addGap(1, 2);
buff1.addGap(5, 7);
buff1.addGap(11, 13);
buff1.addGap(15, 16);
buff1.setup(0, 16);
std::istream iss1(&buff1);
std::string s;
iss1 >> s; //our stream
if("aabbbcccdd" != s) {
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test2Gaps (1)";
}
std::cout << "String 1 is >>" << s << "<<" << std::endl;
//2nd test: putback stuff
geryon::server::GIstreambuff buff2(buffers);
buff2.addGap(1, 2);
buff2.addGap(5, 7);
buff2.addGap(11, 13);
buff2.addGap(15, 16);
buff2.setup(0, 16);
std::istream iss2(&buff2);
char c;
iss2 >> c; //a 0
if(c != 'a'){
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test2Gaps (2.0) found:" << c;
}
iss2.putback(c); //0
iss2 >> c; //a 0
if(c != 'a'){
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test2Gaps (2.1) found:" << c;
}
iss2 >> c; //a 2
if(c != 'a'){
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test2Gaps (2.2) found:" << c;
}
iss2.putback(c); //2
iss2 >> c; //a 2
if(c != 'a'){
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test2Gaps (2.3) found:" << c;
}
iss2 >> c; //b 3
if(c != 'b'){
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test2Gaps (2.4) found:" << c;
}
iss2 >> c; //b 4
iss2.putback(c); //4
iss2 >> c; //b 4
if(c != 'b'){
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test2Gaps (2.5) found:" << c;
}
iss2 >> c; //b 7
if(c != 'b'){
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test2Gaps (2.6) found:" << c;
}
iss2 >> s;
if("cccdd" != s) {
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test2Gaps (3)";
}
std::cout << "String 2 is >>" << s << "<<" << std::endl;
}
void test1() {
geryon::server::GUniformMemoryPool pool(BUF_SZ, 1, 0);
std::vector<geryon::server::GBufferHandler> buffers;
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(0).get().buffer()[0] = 'a'; //0
buffers.at(0).get().buffer()[1] = 'a'; //1
buffers.at(0).get().setMarker(2);
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(1).get().buffer()[0] = 'b'; //2
buffers.at(1).get().buffer()[1] = 'b'; //3
buffers.at(1).get().buffer()[2] = 'b'; //4
buffers.at(1).get().setMarker(3);
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(2).get().buffer()[0] = 'c'; //5
buffers.at(2).get().buffer()[1] = 'c'; //6
buffers.at(2).get().buffer()[2] = 'c'; //7
buffers.at(2).get().buffer()[3] = 'c'; //8
buffers.at(2).get().setMarker(4);
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(3).get().buffer()[0] = 'd'; //9
buffers.at(3).get().setMarker(1);
//1st test : abbbc
geryon::server::GIstreambuff buff1(buffers, 1, 6);
std::istream iss1(&buff1);
std::string s;
iss1 >> s; //our stream
if("abbbc" != s) {
LOG(geryon::util::Log::ERROR) << "ERROR: Failed (1)";
}
std::cout << "String 1 is >>" << s << "<<" << std::endl;
//2nd test: all aabbbccccd
geryon::server::GIstreambuff buff2(buffers, 0, 10);
std::istream iss2(&buff2);
iss2 >> s; //our stream
if("aabbbccccd" != s) {
LOG(geryon::util::Log::ERROR) << "ERROR: Failed (2)";
}
std::cout << "String 2 is >>" << s << "<<" << std::endl;
//3rd test: reset the stream
buff2.setup(1,9);
std::istream iss2_1(&buff2); //our stream
iss2_1 >> s;
if("abbbcccc" != s) {
LOG(geryon::util::Log::ERROR) << "ERROR: Failed (3.1)";
}
std::cout << "String 3.1 is >>" << s << "<<" << std::endl;
buff2.setup(2,8);
iss2.rdbuf(&buff2);
iss2 >> s;
if("bbbccc" != s) {
LOG(geryon::util::Log::ERROR) << "ERROR: Failed (3.2)";
}
std::cout << "String 3.2 is >>" << s << "<<" << std::endl;
//4th test: empty (EOF)
geryon::server::GIstreambuff buff3(buffers, 0, 0);
std::istream iss3(&buff3);
if(iss3 >> s) { //yeap, this should return false
LOG(geryon::util::Log::ERROR) << "ERROR: Failed (4)";
}
std::cout << "String 4 is >>" << s << "<<" << std::endl; //unchanged
}
void test1Gaps() {
geryon::server::GUniformMemoryPool pool(BUF_SZ, 1, 0);
std::vector<geryon::server::GBufferHandler> buffers;
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(0).get().buffer()[0] = 'a'; //0
buffers.at(0).get().buffer()[1] = 'X'; //1
buffers.at(0).get().buffer()[2] = 'a'; //2
buffers.at(0).get().setMarker(3);
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(1).get().buffer()[0] = 'b'; //3
buffers.at(1).get().buffer()[1] = 'b'; //4
buffers.at(1).get().buffer()[2] = 'X'; //5
buffers.at(1).get().buffer()[3] = 'X'; //6
buffers.at(1).get().buffer()[4] = 'b'; //7
buffers.at(1).get().setMarker(5);
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(2).get().buffer()[0] = 'c'; //8
buffers.at(2).get().buffer()[1] = 'c'; //9
buffers.at(2).get().buffer()[2] = 'c'; //10
buffers.at(2).get().buffer()[3] = 'X'; //11
buffers.at(2).get().setMarker(4);
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(3).get().buffer()[0] = 'X'; //12
buffers.at(3).get().buffer()[1] = 'd'; //13
buffers.at(3).get().buffer()[2] = 'd'; //14
buffers.at(3).get().buffer()[3] = 'X'; //15
buffers.at(3).get().setMarker(4);
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(4).get().buffer()[0] = 'X'; //16
buffers.at(4).get().buffer()[1] = 'e'; //17
buffers.at(4).get().buffer()[2] = 'e'; //18
buffers.at(4).get().buffer()[3] = 'X'; //19
buffers.at(4).get().setMarker(4);
buffers.push_back(std::move(geryon::server::GBufferHandler(&pool)));
buffers.at(5).get().buffer()[0] = 'X'; //19
buffers.at(5).get().setMarker(1);
//1st test : abb
geryon::server::GIstreambuff buff1(buffers);
buff1.addGap(1, 2);
buff1.setup(1, 5);
std::istream iss1(&buff1);
std::string s;
iss1 >> s; //our stream
if("abb" != s) {
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test1Gaps (1)";
}
std::cout << "String 1 is >>" << s << "<<" << std::endl;
//2nd test: all abbbcccddee
geryon::server::GIstreambuff buff2(buffers);
buff2.addGap(1, 2);
buff2.addGap(5, 7);
buff2.addGap(11, 13);
buff2.addGap(15, 17);
buff2.addGap(19, 20);
buff2.setup(1, 20);
std::istream iss2(&buff2);
iss2 >> s; //our stream
if("abbbcccddee" != s) {
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test1Gaps (2)";
}
std::cout << "String 2 is >>" << s << "<<" << std::endl;
//3rd test: reset the stream
buff2.setup(2,4);
std::istream iss2_1(&buff2); //our stream
iss2_1 >> s;
if("ab" != s) {
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test1Gaps (3.1)";
}
std::cout << "String 3.1 is >>" << s << "<<" << std::endl;
buff2.addGap(11, 13);
buff2.addGap(15, 17);
buff2.setup(11,18);
iss2.rdbuf(&buff2);
iss2 >> s;
if("dde" != s) {
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test1Gaps (3.2)";
}
std::cout << "String 3.2 is >>" << s << "<<" << std::endl;
//4th test: empty (EOF)
geryon::server::GIstreambuff buff3(buffers);
buff3.addGap(11, 13);
buff2.setup(11,13);
std::istream iss3(&buff3);
if(iss3 >> s) { //yeap, this should return false
LOG(geryon::util::Log::ERROR) << "ERROR: Failed test1Gaps (4)";
}
std::cout << "String 4 is >>" << s << "<<" << std::endl; //unchanged
}
void Correlation::getParameters(string filename, int start, int stop)
{
chainName=filename;
double tmp;
string strtmp;
try {
burnin=start;
nbsample = stop-start;
if(nbsample<=0)
{
cerr << "ERROR: in Correlation::getParameters, asking sampling from point " << start << " to point "<< stop <<", exiting\n";
cerr.flush();
throw(0);
}
ifstream *is=new ifstream;
is->open(filename.c_str(), ifstream::in);
char line[100000];
string strline;
is->getline(line,100000);
strline=line;
istringstream iss1(strline);
nbparameter=0;
/*ALL*/
iss1 >> strtmp;
iss1 >> strtmp;
iss1 >> strtmp;
/*ALL*/
strtmp="null";
while(iss1.good())
{
iss1 >> strtmp;
nbparameter++;
}
init();
istringstream iss2(strline);
/*ALL*/
iss2 >> strtmp;
iss2 >> strtmp;
iss2 >> strtmp;
/*ALL*/
for(int j=0;j<nbparameter;j++)
iss2 >> parameterName[j];
createParameterBuffer();
createWeight();
for(int i=0;i<stop;i++)
{
/*ALL*/
*is >> tmp;
*is >> tmp;
*is >> tmp;
/*ALL*/
for(int j=0;j<nbparameter;j++)
{
*is >> tmp;
if(i>=burnin)
{
parameters[j][i-burnin]=tmp;
}
}
}
delete is;
} catch(...) {
cerr << "ERROR while reading " << filename << "\n";
cerr.flush();
exit(0);
}
}
