static void
ba81ComputeFit(omxFitFunction* oo, int want, FitContext *fc)
{
BA81FitState *state = (BA81FitState*) oo->argStruct;
BA81Expect *estate = (BA81Expect*) oo->expectation->argStruct;
if (fc) state->numFreeParam = fc->varGroup->vars.size();
if (want & FF_COMPUTE_INITIAL_FIT) return;
if (estate->type == EXPECTATION_AUGMENTED) {
buildItemParamMap(oo, fc);
if (want & FF_COMPUTE_PARAMFLAVOR) {
for (size_t px=0; px < state->numFreeParam; ++px) {
if (state->paramFlavor[px] == NULL) continue;
fc->flavor[px] = state->paramFlavor[px];
}
return;
}
if (want & FF_COMPUTE_PREOPTIMIZE) {
omxExpectationCompute(fc, oo->expectation, NULL);
return;
}
if (want & FF_COMPUTE_INFO) {
buildLatentParamMap(oo, fc);
if (!state->freeItemParams) {
omxRaiseErrorf("%s: no free parameters", oo->name());
return;
}
ba81SetupQuadrature(oo->expectation);
if (fc->infoMethod == INFO_METHOD_HESSIAN) {
ba81ComputeEMFit(oo, FF_COMPUTE_HESSIAN, fc);
} else {
omxRaiseErrorf("Information matrix approximation method %d is not available",
fc->infoMethod);
return;
}
return;
}
double got = ba81ComputeEMFit(oo, want, fc);
oo->matrix->data[0] = got;
return;
} else if (estate->type == EXPECTATION_OBSERVED) {
if (want == FF_COMPUTE_STARTING) {
buildLatentParamMap(oo, fc);
if (state->freeLatents) setLatentStartingValues(oo, fc);
return;
}
if (want & (FF_COMPUTE_INFO | FF_COMPUTE_GRADIENT)) {
buildLatentParamMap(oo, fc); // only to check state->freeLatents
buildItemParamMap(oo, fc);
if (!state->freeItemParams && !state->freeLatents) {
omxRaiseErrorf("%s: no free parameters", oo->name());
return;
}
ba81SetupQuadrature(oo->expectation);
if (want & FF_COMPUTE_GRADIENT ||
(want & FF_COMPUTE_INFO && fc->infoMethod == INFO_METHOD_MEAT)) {
gradCov(oo, fc);
} else {
if (state->freeLatents) {
omxRaiseErrorf("Information matrix approximation method %d is not available",
fc->infoMethod);
return;
}
if (!state->freeItemParams) {
omxRaiseErrorf("%s: no free parameters", oo->name());
return;
}
sandwich(oo, fc);
}
}
if (want & (FF_COMPUTE_HESSIAN | FF_COMPUTE_IHESSIAN)) {
omxRaiseErrorf("%s: Hessian is not available for observed data", oo->name());
}
if (want & FF_COMPUTE_MAXABSCHANGE) {
double mac = std::max(omxMaxAbsDiff(state->itemParam, estate->itemParam),
omxMaxAbsDiff(state->latentMean, estate->_latentMeanOut));
fc->mac = std::max(mac, omxMaxAbsDiff(state->latentCov, estate->_latentCovOut));
state->copyEstimates(estate);
}
if (want & FF_COMPUTE_FIT) {
omxExpectationCompute(fc, oo->expectation, NULL);
Eigen::ArrayXd &patternLik = estate->grp.patternLik;
const int numUnique = estate->getNumUnique();
if (state->returnRowLikelihoods) {
const double OneOverLargest = estate->grp.quad.getReciprocalOfOne();
omxData *data = estate->data;
for (int rx=0; rx < numUnique; rx++) {
int dups = omxDataNumIdenticalRows(data, estate->grp.rowMap[rx]);
for (int dup=0; dup < dups; dup++) {
int dest = omxDataIndex(data, estate->grp.rowMap[rx]+dup);
oo->matrix->data[dest] = patternLik[rx] * OneOverLargest;
}
}
} else {
double *rowWeight = estate->grp.rowWeight;
const double LogLargest = estate->LogLargestDouble;
double got = 0;
#pragma omp parallel for num_threads(Global->numThreads) reduction(+:got)
for (int ux=0; ux < numUnique; ux++) {
if (patternLik[ux] == 0) continue;
got += rowWeight[ux] * (log(patternLik[ux]) - LogLargest);
}
double fit = nan("infeasible");
if (estate->grp.excludedPatterns < numUnique) {
fit = Global->llScale * got;
// add in some badness for excluded patterns
fit += fit * estate->grp.excludedPatterns;
}
if (estate->verbose >= 1) mxLog("%s: observed fit %.4f (%d/%d excluded)",
oo->name(), fit, estate->grp.excludedPatterns, numUnique);
oo->matrix->data[0] = fit;
}
}
} else {
Rf_error("%s: Predict nothing or scores before computing %d", oo->name(), want);
}
}
static void omxRowFitFunctionSingleIteration(omxFitFunction *localobj, omxFitFunction *sharedobj, int rowbegin, int rowcount,
FitContext *fc) {
omxRowFitFunction* oro = ((omxRowFitFunction*) localobj->argStruct);
omxRowFitFunction* shared_oro = ((omxRowFitFunction*) sharedobj->argStruct);
omxMatrix *rowAlgebra, *rowResults;
omxMatrix *filteredDataRow, *dataRow, *existenceVector;
omxMatrix *dataColumns;
omxData *data;
int isContiguous, contiguousStart, contiguousLength;
int numCols, numRemoves;
rowAlgebra = oro->rowAlgebra;
rowResults = shared_oro->rowResults;
data = oro->data;
dataColumns = oro->dataColumns;
dataRow = oro->dataRow;
filteredDataRow = oro->filteredDataRow;
existenceVector = oro->existenceVector;
isContiguous = oro->contiguous.isContiguous;
contiguousStart = oro->contiguous.start;
contiguousLength = oro->contiguous.length;
Eigen::VectorXd oldDefs;
oldDefs.resize(data->defVars.size());
oldDefs.setConstant(NA_REAL);
numCols = dataColumns->cols;
int *toRemove = (int*) malloc(sizeof(int) * dataColumns->cols);
int *zeros = (int*) calloc(dataColumns->cols, sizeof(int));
for(int row = rowbegin; row < data->rows && (row - rowbegin) < rowcount; row++) {
data->handleDefinitionVarList(localobj->matrix->currentState, row, oldDefs.data());
omxStateNextRow(localobj->matrix->currentState); // Advance row
// Populate data row
numRemoves = 0;
if (isContiguous) {
omxContiguousDataRow(data, row, contiguousStart, contiguousLength, dataRow);
} else {
omxDataRow(data, row, dataColumns, dataRow); // Populate data row
}
markDataRowDependencies(localobj->matrix->currentState, oro);
for(int j = 0; j < dataColumns->cols; j++) {
double dataValue = omxVectorElement(dataRow, j);
if(std::isnan(dataValue)) {
numRemoves++;
toRemove[j] = 1;
omxSetVectorElement(existenceVector, j, 0);
} else {
toRemove[j] = 0;
omxSetVectorElement(existenceVector, j, 1);
}
}
// TODO: Determine if this is the correct response.
if(numRemoves == numCols) {
char *errstr = (char*) calloc(250, sizeof(char));
sprintf(errstr, "Row %d completely missing. omxRowFitFunction cannot have completely missing rows.", omxDataIndex(data, row));
omxRaiseError(errstr);
free(errstr);
continue;
}
omxCopyMatrix(filteredDataRow, dataRow);
omxRemoveRowsAndColumns(filteredDataRow, 0, numRemoves, zeros, toRemove);
omxRecompute(rowAlgebra, fc);
omxCopyMatrixToRow(rowAlgebra, omxDataIndex(data, row), rowResults);
}
free(toRemove);
free(zeros);
}