void Foam::proxySurfaceWriter::write
(
const fileName& outputDir,
const fileName& surfaceName,
const pointField& points,
const faceList& faces,
const bool verbose
) const
{
// avoid bad values
if (ext_.empty())
{
return;
}
if (!isDir(outputDir))
{
mkDir(outputDir);
}
fileName outName(outputDir/surfaceName + "." + ext_);
if (verbose)
{
Info<< "Writing geometry to " << outName << endl;
}
MeshedSurfaceProxy<face>(points, faces).write(outName);
}
//---------------------------------------------------------------
// Purpose:
//---------------------------------------------------------------
void CEntityOutputWnd::UpdateEventComboBox()
{
CString oldText;
m_cbEvt.GetWindowText(oldText);
m_cbEvt.ResetContent();
for(int id : m_list.GetEditIds()) //iterate over selected outputs
{
COutputListWnd::OutputSourceList *sourceList = m_list.GetSourceEnts(id);
for(const std::pair<CEditorEntity*, CEntityOutput*> &outputPair : *sourceList) //iterate over output source entities
{
CEditorEntity *ent = outputPair.first;
CEntityRegisterEntity *regEnt = GetEntityRegister()->GetEntity(ent->GetClassnameA());
if(regEnt)
{
size_t numOuts = regEnt->GetNumOutputs();
for(size_t i = 0; i < numOuts; i++) //iterate over the possible outputs of this source entity
{
const CEntityRegisterOutput *regOut = regEnt->GetOutput(i);
CString outName(CA2T(regOut->name.c_str()));
if( m_cbEvt.FindString(-1, outName) == CB_ERR )
m_cbEvt.AddString(outName);
}
}
}
}
m_cbEvt.SetWindowText(oldText);
}
String getUniqueName( const char *inName )
{
String outName( inName );
if ( outName.isEmpty() )
return String::EmptyString;
SimObject *dummy;
if ( !Sim::findObject( outName, dummy ) )
return outName;
S32 suffixNumb = -1;
String nameStr( String::GetTrailingNumber( outName, suffixNumb ) );
suffixNumb = mAbs( suffixNumb ) + 1;
#define MAX_TRIES 100
for ( U32 i = 0; i < MAX_TRIES; i++ )
{
outName = String::ToString( "%s%d", nameStr.c_str(), suffixNumb );
if ( !Sim::findObject( outName, dummy ) )
return outName;
suffixNumb++;
}
Con::errorf( "Sim::getUniqueName( %s ) - failed after %d attempts", inName, MAX_TRIES );
return String::EmptyString;
}
INode* plDistribComponent_old::IMakeOne(plDistribInstTab& nodes)
{
if( !nodes.Count() )
return nil;
int iStartNode = 0;
NameMaker *nn = GetCOREInterface()->NewNameMaker();
while( iStartNode < nodes.Count() )
{
TriObject* triObj = CreateNewTriObject();
Mesh* outMesh = &triObj->mesh;
*outMesh = *nodes[iStartNode].fMesh;
INode *outNode = GetCOREInterface()->CreateObjectNode(triObj);
Matrix3 l2w = nodes[0].fObjectTM;
Matrix3 w2l = Inverse(l2w);
MeshDelta meshDelta(*outMesh);
int i;
for( i = iStartNode; i < nodes.Count(); i++ )
{
Mesh* nextMesh = nodes[i].fMesh;
Matrix3 relativeTransform = nodes[i].fObjectTM * w2l;
meshDelta.AttachMesh(*outMesh, *nextMesh, relativeTransform, 0);
meshDelta.Apply(*outMesh);
const int kFaceCutoff = 1000;
if( outMesh->getNumFaces() > kFaceCutoff )
break;
}
iStartNode = i;
outNode->SetNodeTM(TimeValue(0), l2w);
outNode->CopyProperties(nodes[0].fNode);
outNode->SetMtl(nodes[0].fNode->GetMtl());
outNode->SetObjOffsetPos(Point3(0,0,0));
Quat identQuat;
identQuat.Identity();
outNode->SetObjOffsetRot(identQuat);
outNode->SetObjOffsetScale(ScaleValue(Point3(1.f, 1.f, 1.f)));
TSTR outName(TSTR("Preview"));
nn->MakeUniqueName(outName);
outNode->SetName(outName);
fCompPB->Append(kReplicants, 1, &outNode);
}
return nil;
}
//--------------------------------------------------------------------------
// end of special-label procedures
//----------------------------------------------------------------------
uchar outOffName(ushort off)
{
if ( !off || off == curSeg.CodeSize) return(putMethodLabel(off) );
if ( off < curSeg.CodeSize ) {
uchar err = 0;
if(outName(curSeg.startEA + curSeg.CodeSize, 0,
curSeg.startEA, off, &err)) return(0); // good
if ( err) return(1 ); // bad
}
return(putShort(off, 0));
}
//--------------------------------------------------------------------------
uchar putScope(ushort scope, uint32 doff)
{
if ( !scope || scope == curSeg.CodeSize) return(putMethodLabel(scope) );
if ( scope < curSeg.CodeSize ) {
uchar err = 0;
if(outName(curSeg.DataBase + doff, 0,
curSeg.startEA, scope, &err)) return(0);
if ( err) return(1 );
}
return(putShort(scope, 0));
}
void BaseProgramRenderPass::Link()
{
RETURN_IF(mProgramState->Program()==0||mIsLinked);
SAFE_DELETE_DICTIONARY_VALUE(mUniforms);
SAFE_DELETE_DICTIONARY_VALUE(mAttributes);
uint program=mProgramState->Program();
Render::Instance().LinkProgram(program);
int outLinkStatus=Render::Instance().GetProgramStatus(program,GraphicsProgramStatus::LinkStatus);
if (!outLinkStatus)
{
//link error
int outInfoLogLength=Render::Instance().GetProgramStatus(program,GraphicsProgramStatus::InfoLogLength);
HeapString infoLog((size_t)outInfoLogLength+1,true);
Render::Instance().GetProgramInfoLog(program,infoLog);
Log::FormatError("Failed to link effect:{}",infoLog.Buffer());
Uninitialize();
return ;
}
Render::Instance().ValidateProgram(program);
int outValidateStatus=Render::Instance().GetProgramStatus(program,GraphicsProgramStatus::ValidateStatus);
if (!outValidateStatus)
{
//link error
int outInfoLogLength=Render::Instance().GetProgramStatus(program,GraphicsProgramStatus::InfoLogLength);
HeapString infoLog((size_t)outInfoLogLength+1,true);
Render::Instance().GetProgramInfoLog(program,infoLog);
Log::FormatError("Failed to validate effect:{}",infoLog.Buffer());
Uninitialize();
return;
}
RenderStateMachine::Instance().Push(mProgramState);
//add all uniforms
uint uniformCount=(uint)Render::Instance().GetProgramStatus(program,GraphicsProgramStatus::ActiveUniformCount);
uint maxUniformNameLength=(uint)Render::Instance().GetProgramStatus(program,GraphicsProgramStatus::MaxActiveUniformNameLength);
HeapString outName((size_t)maxUniformNameLength+1,true);
FOR_EACH_SIZE(i,uniformCount)
{
int outSize;
uint outDataType;
Render::Instance().GetActiveUniformName(program,static_cast<uint>(i),outSize,outDataType,outName);
int index= Render::Instance().GetUniformLocation(program,outName); //NOTE: Cannot use i as index
ShaderUniform* uniform=new ShaderUniform(this,index,outName,(GraphicsUniformDataType)outDataType);
mUniforms.Add(outName,uniform);
}
int main(int argc, char **argv) {
if (argc != 2) {
std::cerr << "usage:\n " << argv[0] << " <directory name with language examples in txt format>\n";
return 0;
}
ZLibrary::init(argc, argv);
std::string directoryName = argv[1];
shared_ptr<ZLDir> directory = ZLFile(directoryName).directory(false);
if (directory.isNull()) {
std::cerr << "cannot open directory " << directoryName << "\n";
return 0;
}
std::vector<std::string> fileNames;
directory->collectFiles(fileNames, false);
ZLMapBasedStatistics tempStatistics, resultStatistics;
int counter = 0;
for (std::vector<std::string>::const_iterator it = fileNames.begin(); it != fileNames.end(); ++it) {
ZLFile file(directory->itemPath(*it));
if (file.extension() != "txt") {
continue;
} else {
++counter;
}
ZLStatisticsGenerator("\n\r ").generate(file.path(), CHAR_SEQUENCE_SIZE, tempStatistics);
if (counter == 1) {
resultStatistics = tempStatistics;
continue;
}
resultStatistics.retain(tempStatistics);
}
std::string outName (argv[1]);
outName += "pattern.stat";
shared_ptr<ZLOutputStream> streamOut = ZLFile(outName).outputStream();
streamOut->open();
ZLMapBasedStatistics restrictedResultStatistics = resultStatistics.top(TOP_AMOUNT);
restrictedResultStatistics.scaleToShort();
ZLStatisticsXMLWriter(*streamOut).writeStatistics(restrictedResultStatistics);
streamOut->close();
ZLibrary::shutdown();
return 0;
}
void Decoder::decode(std::string inFileName,std::string outFileName,bool mode)
{
//open input file
std::string inName(inFileName);
if (inName.rfind(".ebast",inName.size()-6) == std::string::npos) {
std::cerr << "This isn't a ebast File" << std::endl;
exit(1);
}
inFile.open(inFileName, std::ios::in | std::ios::binary);
if (!inFile.is_open()) {
std::cerr << "Unable to read File" << std::endl;
exit(1);
}
//open output file
std::string outName(outFileName);
outName += ".txt";
if(std::ifstream(outName.c_str()))
{
std::cerr<<outName<<" already exists!"<<std::endl;
exit(1);
}
outFile.open(outName.c_str(),std::ios::out | std::ios::binary);
if (!outFile.is_open()) {
std::cerr << "Unable to create File" << std::endl;
exit(1);
}
//reading frequency table from file
huffmanTree->setRoot(readHeader());
if (mode) {
print(huffmanTree->getRoot());
}
//make file
makeFile();
}
int main(int argc, char** argv){
//Usage message
if(argc > 1 && strcmp(argv[1], "--help") == 0){
std::cerr << "Usage(all parameters optional): " << std::endl << argv[0] <<
" camX camY camZ imWidth imHeight outImage.png rot" << std::endl;
return 0;
}
//Parse command line parameters
int index = 1; //which arg are we currently parsing?
float camX, camY, camZ, rotDeg;
camX = camY = camZ = rotDeg = 0.0f;
int width, height;
width = height = 64;
std::string outName("default.ppm");
if(index < argc)
camX = atof(argv[index++]);
if(index < argc)
camY = atof(argv[index++]);
if(index < argc)
camZ = atof(argv[index++]);
if(index < argc)
width = atoi(argv[index++]);
if(index < argc)
height = atoi(argv[index++]);
Assert(width > 0 && height > 0);
if(index < argc)
outName = std::string(argv[index++]);
if(index < argc)
rotDeg = atof(argv[index++]);
//Construct camera placement transformation
Transform moveTrans = Transform::translate(Vector(camX, camY, camZ));
Transform rotTrans = Transform::rotateZ(rotDeg);
Transform camToWorld = moveTrans * rotTrans;
//Generate scene
std::vector<Shape*> shapes;
std::vector<Light*> lights;
Camera* cam = SceneGen::genCornellBox(shapes, lights);
//Setup image plane and sampler
const float pixelWidth = 1.0f;
const float pixelHeight = 1.0f;
ImageSampler* sampler = new JitteredSampler(width, height, spp,
pixelWidth / 2.0f, pixelHeight / 2.0f); //Jitter x and jitter Y
ImageSensor* ccd = new ImageSensor(width, height, NULL ,
new GaussianFilter(3.0f, pixelWidth, pixelHeight)
);
//Acceleration structure
AccelStructure* accelScene = new NoAccelStructure();
accelScene->buildAccelStructure(shapes);
//Full scene
Scene* scene = new Scene(accelScene, lights);
//Setup integrator and renderer
Integrator* integrator = new DirectLightIntegrator();
Renderer* rt = new Renderer();
//Renderer* rt = new ParallelRenderer(32, 32, 4);
//Render a picture
std::cout << "Rendering scene..." << std::endl;
HDRImage* im = rt->render(sampler, cam, ccd, scene, integrator);
std::cout << "Done rendering scene." << std::endl;
//Cleanup memory
delete rt;
delete sampler;
delete cam;
delete ccd;
delete scene;
delete integrator;
//Potentially tonemap the image
LDRImage* tmapim = NULL;
if(StringUtils::endsWith(outName, ".pfm")){
std::cout << "Skipping tone mapping and saving an HDR image directly..." << std::endl;
bool ok = ImageIO::writePFM(outName, im);
if(!ok){
std::cerr << "ERROR - could not write image: " << outName << std::endl;
}
}else{
std::cout << "Tone mapping..." << std::endl;
tmapim = ToneMap::toneMapMaxToWhite(im, true);
ToneMap::makeWhiteBorder(tmapim);
std::cout << "Done tone mapping." << std::endl;
//Save to disk
std::cout << "Outputting image to " << outName << "..." << std::endl;
bool ok = ImageIO::writePPM(outName, tmapim, "LDR ppm from colins command line renderer");
if(!ok){
std::cerr << "ERROR - could not write image: " << outName << std::endl;
}
}
delete im; im = NULL;
delete tmapim; tmapim = NULL;
std::cout << "Done outputting image." << std::endl;
return 0;
}
int main(int argc, char *argv[])
{
QString workDir;
#ifdef Q_OS_MAC
if (QDir(QString()).absolutePath() == "/") {
QString first = argc ? QString::fromLocal8Bit(argv[0]) : QString();
if (!first.isEmpty()) {
QFileInfo info(first);
if (info.exists()) {
QDir result(info.absolutePath() + "/../../..");
workDir = result.absolutePath() + '/';
}
}
}
#endif
QString remove;
int version = 0;
QFileInfoList files;
for (int i = 0; i < argc; ++i) {
if (string("-path") == argv[i] && i + 1 < argc) {
QString path = workDir + QString(argv[i + 1]);
QFileInfo info(path);
files.push_back(info);
if (remove.isEmpty()) remove = info.canonicalPath() + "/";
} else if (string("-version") == argv[i] && i + 1 < argc) {
version = QString(argv[i + 1]).toInt();
} else if (string("-dev") == argv[i]) {
DevChannel = true;
} else if (string("-beta") == argv[i] && i + 1 < argc) {
BetaVersion = QString(argv[i + 1]).toULongLong();
if (BetaVersion > version * 1000ULL && BetaVersion < (version + 1) * 1000ULL) {
DevChannel = false;
BetaSignature = countBetaVersionSignature(BetaVersion);
if (BetaSignature.isEmpty()) {
return -1;
}
} else {
cout << "Bad -beta param value passed, should be for the same version: " << version << ", beta: " << BetaVersion << "\n";
return -1;
}
}
}
if (files.isEmpty() || remove.isEmpty() || version <= 1016 || version > 999999999) {
#ifdef Q_OS_WIN
cout << "Usage: Packer.exe -path {file} -version {version} OR Packer.exe -path {dir} -version {version}\n";
#elif defined Q_OS_MAC
cout << "Usage: Packer.app -path {file} -version {version} OR Packer.app -path {dir} -version {version}\n";
#else
cout << "Usage: Packer -path {file} -version {version} OR Packer -path {dir} -version {version}\n";
#endif
return -1;
}
bool hasDirs = true;
while (hasDirs) {
hasDirs = false;
for (QFileInfoList::iterator i = files.begin(); i != files.end(); ++i) {
QFileInfo info(*i);
QString fullPath = info.canonicalFilePath();
if (info.isDir()) {
hasDirs = true;
files.erase(i);
QDir d = QDir(info.absoluteFilePath());
QString fullDir = d.canonicalPath();
QStringList entries = d.entryList(QDir::Files | QDir::Dirs | QDir::NoSymLinks | QDir::NoDotAndDotDot);
files.append(d.entryInfoList(QDir::Files | QDir::Dirs | QDir::NoSymLinks | QDir::NoDotAndDotDot));
break;
} else if (!info.isReadable()) {
cout << "Can't read: " << info.absoluteFilePath().toUtf8().constData() << "\n";
return -1;
} else if (info.isHidden()) {
hasDirs = true;
files.erase(i);
break;
}
}
}
for (QFileInfoList::iterator i = files.begin(); i != files.end(); ++i) {
QFileInfo info(*i);
if (!info.canonicalFilePath().startsWith(remove)) {
cout << "Can't find '" << remove.toUtf8().constData() << "' in file '" << info.canonicalFilePath().toUtf8().constData() << "' :(\n";
return -1;
}
}
QByteArray result;
{
QBuffer buffer(&result);
buffer.open(QIODevice::WriteOnly);
QDataStream stream(&buffer);
stream.setVersion(QDataStream::Qt_5_1);
if (BetaVersion) {
stream << quint32(0x7FFFFFFF);
stream << quint64(BetaVersion);
} else {
stream << quint32(version);
}
stream << quint32(files.size());
cout << "Found " << files.size() << " file" << (files.size() == 1 ? "" : "s") << "..\n";
for (QFileInfoList::iterator i = files.begin(); i != files.end(); ++i) {
QFileInfo info(*i);
QString fullName = info.canonicalFilePath();
QString name = fullName.mid(remove.length());
cout << name.toUtf8().constData() << " (" << info.size() << ")\n";
QFile f(fullName);
if (!f.open(QIODevice::ReadOnly)) {
cout << "Can't open '" << fullName.toUtf8().constData() << "' for read..\n";
return -1;
}
QByteArray inner = f.readAll();
stream << name << quint32(inner.size()) << inner;
#if defined Q_OS_MAC || defined Q_OS_LINUX
stream << (QFileInfo(fullName).isExecutable() ? true : false);
#endif
}
if (stream.status() != QDataStream::Ok) {
cout << "Stream status is bad: " << stream.status() << "\n";
return -1;
}
}
int32 resultSize = result.size();
cout << "Compression start, size: " << resultSize << "\n";
QByteArray compressed, resultCheck;
#ifdef Q_OS_WIN // use Lzma SDK for win
const int32 hSigLen = 128, hShaLen = 20, hPropsLen = LZMA_PROPS_SIZE, hOriginalSizeLen = sizeof(int32), hSize = hSigLen + hShaLen + hPropsLen + hOriginalSizeLen; // header
compressed.resize(hSize + resultSize + 1024 * 1024); // rsa signature + sha1 + lzma props + max compressed size
size_t compressedLen = compressed.size() - hSize;
size_t outPropsSize = LZMA_PROPS_SIZE;
uchar *_dest = (uchar*)(compressed.data() + hSize);
size_t *_destLen = &compressedLen;
const uchar *_src = (const uchar*)(result.constData());
size_t _srcLen = result.size();
uchar *_outProps = (uchar*)(compressed.data() + hSigLen + hShaLen);
int res = LzmaCompress(_dest, _destLen, _src, _srcLen, _outProps, &outPropsSize, 9, 64 * 1024 * 1024, 4, 0, 2, 273, 2);
if (res != SZ_OK) {
cout << "Error in compression: " << res << "\n";
return -1;
}
compressed.resize(int(hSize + compressedLen));
memcpy(compressed.data() + hSigLen + hShaLen + hPropsLen, &resultSize, hOriginalSizeLen);
cout << "Compressed to size: " << compressedLen << "\n";
cout << "Checking uncompressed..\n";
int32 resultCheckLen;
memcpy(&resultCheckLen, compressed.constData() + hSigLen + hShaLen + hPropsLen, hOriginalSizeLen);
if (resultCheckLen <= 0 || resultCheckLen > 1024 * 1024 * 1024) {
cout << "Bad result len: " << resultCheckLen << "\n";
return -1;
}
resultCheck.resize(resultCheckLen);
size_t resultLen = resultCheck.size();
SizeT srcLen = compressedLen;
int uncompressRes = LzmaUncompress((uchar*)resultCheck.data(), &resultLen, (const uchar*)(compressed.constData() + hSize), &srcLen, (const uchar*)(compressed.constData() + hSigLen + hShaLen), LZMA_PROPS_SIZE);
if (uncompressRes != SZ_OK) {
cout << "Uncompress failed: " << uncompressRes << "\n";
return -1;
}
if (resultLen != size_t(result.size())) {
cout << "Uncompress bad size: " << resultLen << ", was: " << result.size() << "\n";
return -1;
}
#else // use liblzma for others
const int32 hSigLen = 128, hShaLen = 20, hPropsLen = 0, hOriginalSizeLen = sizeof(int32), hSize = hSigLen + hShaLen + hOriginalSizeLen; // header
compressed.resize(hSize + resultSize + 1024 * 1024); // rsa signature + sha1 + lzma props + max compressed size
size_t compressedLen = compressed.size() - hSize;
lzma_stream stream = LZMA_STREAM_INIT;
int preset = 9 | LZMA_PRESET_EXTREME;
lzma_ret ret = lzma_easy_encoder(&stream, preset, LZMA_CHECK_CRC64);
if (ret != LZMA_OK) {
const char *msg;
switch (ret) {
case LZMA_MEM_ERROR: msg = "Memory allocation failed"; break;
case LZMA_OPTIONS_ERROR: msg = "Specified preset is not supported"; break;
case LZMA_UNSUPPORTED_CHECK: msg = "Specified integrity check is not supported"; break;
default: msg = "Unknown error, possibly a bug"; break;
}
cout << "Error initializing the encoder: " << msg << " (error code " << ret << ")\n";
return -1;
}
stream.avail_in = resultSize;
stream.next_in = (uint8_t*)result.constData();
stream.avail_out = compressedLen;
stream.next_out = (uint8_t*)(compressed.data() + hSize);
lzma_ret res = lzma_code(&stream, LZMA_FINISH);
compressedLen -= stream.avail_out;
lzma_end(&stream);
if (res != LZMA_OK && res != LZMA_STREAM_END) {
const char *msg;
switch (res) {
case LZMA_MEM_ERROR: msg = "Memory allocation failed"; break;
case LZMA_DATA_ERROR: msg = "File size limits exceeded"; break;
default: msg = "Unknown error, possibly a bug"; break;
}
cout << "Error in compression: " << msg << " (error code " << res << ")\n";
return -1;
}
compressed.resize(int(hSize + compressedLen));
memcpy(compressed.data() + hSigLen + hShaLen, &resultSize, hOriginalSizeLen);
cout << "Compressed to size: " << compressedLen << "\n";
cout << "Checking uncompressed..\n";
int32 resultCheckLen;
memcpy(&resultCheckLen, compressed.constData() + hSigLen + hShaLen, hOriginalSizeLen);
if (resultCheckLen <= 0 || resultCheckLen > 1024 * 1024 * 1024) {
cout << "Bad result len: " << resultCheckLen << "\n";
return -1;
}
resultCheck.resize(resultCheckLen);
size_t resultLen = resultCheck.size();
stream = LZMA_STREAM_INIT;
ret = lzma_stream_decoder(&stream, UINT64_MAX, LZMA_CONCATENATED);
if (ret != LZMA_OK) {
const char *msg;
switch (ret) {
case LZMA_MEM_ERROR: msg = "Memory allocation failed"; break;
case LZMA_OPTIONS_ERROR: msg = "Specified preset is not supported"; break;
case LZMA_UNSUPPORTED_CHECK: msg = "Specified integrity check is not supported"; break;
default: msg = "Unknown error, possibly a bug"; break;
}
cout << "Error initializing the decoder: " << msg << " (error code " << ret << ")\n";
return -1;
}
stream.avail_in = compressedLen;
stream.next_in = (uint8_t*)(compressed.constData() + hSize);
stream.avail_out = resultLen;
stream.next_out = (uint8_t*)resultCheck.data();
res = lzma_code(&stream, LZMA_FINISH);
if (stream.avail_in) {
cout << "Error in decompression, " << stream.avail_in << " bytes left in _in of " << compressedLen << " whole.\n";
return -1;
} else if (stream.avail_out) {
cout << "Error in decompression, " << stream.avail_out << " bytes free left in _out of " << resultLen << " whole.\n";
return -1;
}
lzma_end(&stream);
if (res != LZMA_OK && res != LZMA_STREAM_END) {
const char *msg;
switch (res) {
case LZMA_MEM_ERROR: msg = "Memory allocation failed"; break;
case LZMA_FORMAT_ERROR: msg = "The input data is not in the .xz format"; break;
case LZMA_OPTIONS_ERROR: msg = "Unsupported compression options"; break;
case LZMA_DATA_ERROR: msg = "Compressed file is corrupt"; break;
case LZMA_BUF_ERROR: msg = "Compressed data is truncated or otherwise corrupt"; break;
default: msg = "Unknown error, possibly a bug"; break;
}
cout << "Error in decompression: " << msg << " (error code " << res << ")\n";
return -1;
}
#endif
if (memcmp(result.constData(), resultCheck.constData(), resultLen)) {
cout << "Data differ :(\n";
return -1;
}
/**/
result = resultCheck = QByteArray();
cout << "Counting SHA1 hash..\n";
uchar sha1Buffer[20];
memcpy(compressed.data() + hSigLen, hashSha1(compressed.constData() + hSigLen + hShaLen, uint32(compressedLen + hPropsLen + hOriginalSizeLen), sha1Buffer), hShaLen); // count sha1
uint32 siglen = 0;
cout << "Signing..\n";
RSA *prKey = PEM_read_bio_RSAPrivateKey(BIO_new_mem_buf(const_cast<char*>((DevChannel || BetaVersion) ? PrivateDevKey : PrivateKey), -1), 0, 0, 0);
if (!prKey) {
cout << "Could not read RSA private key!\n";
return -1;
}
if (RSA_size(prKey) != hSigLen) {
cout << "Bad private key, size: " << RSA_size(prKey) << "\n";
RSA_free(prKey);
return -1;
}
if (RSA_sign(NID_sha1, (const uchar*)(compressed.constData() + hSigLen), hShaLen, (uchar*)(compressed.data()), &siglen, prKey) != 1) { // count signature
cout << "Signing failed!\n";
RSA_free(prKey);
return -1;
}
RSA_free(prKey);
if (siglen != hSigLen) {
cout << "Bad signature length: " << siglen << "\n";
return -1;
}
cout << "Checking signature..\n";
RSA *pbKey = PEM_read_bio_RSAPublicKey(BIO_new_mem_buf(const_cast<char*>((DevChannel || BetaVersion) ? PublicDevKey : PublicKey), -1), 0, 0, 0);
if (!pbKey) {
cout << "Could not read RSA public key!\n";
return -1;
}
if (RSA_verify(NID_sha1, (const uchar*)(compressed.constData() + hSigLen), hShaLen, (const uchar*)(compressed.constData()), siglen, pbKey) != 1) { // verify signature
RSA_free(pbKey);
cout << "Signature verification failed!\n";
return -1;
}
cout << "Signature verified!\n";
RSA_free(pbKey);
#ifdef Q_OS_WIN
QString outName(QString("tupdate%1").arg(BetaVersion ? BetaVersion : version));
#elif defined Q_OS_MAC
QString outName(QString("tmacupd%1").arg(BetaVersion ? BetaVersion : version));
#elif defined Q_OS_LINUX32
QString outName(QString("tlinux32upd%1").arg(BetaVersion ? BetaVersion : version));
#elif defined Q_OS_LINUX64
QString outName(QString("tlinuxupd%1").arg(BetaVersion ? BetaVersion : version));
#else
#error Unknown platform!
#endif
if (BetaVersion) {
outName += "_" + BetaSignature;
}
QFile out(outName);
if (!out.open(QIODevice::WriteOnly)) {
cout << "Can't open '" << outName.toUtf8().constData() << "' for write..\n";
return -1;
}
out.write(compressed);
out.close();
if (BetaVersion) {
QString keyName(QString("tbeta_%1_key").arg(BetaVersion));
QFile key(keyName);
if (!key.open(QIODevice::WriteOnly)) {
cout << "Can't open '" << keyName.toUtf8().constData() << "' for write..\n";
return -1;
}
key.write(BetaSignature.toUtf8());
key.close();
}
cout << "Update file '" << outName.toUtf8().constData() << "' written successfully!\n";
return 0;
}
bool idaapi outop(op_t& x)
{
uchar warn = 0;
switch ( x.type ) {
case o_near:
if ( x.ref ) ++warn;
else {
if ( outName(cmd.ea + x.offb, x.n, curSeg.startEA, x.addr, &warn) ) break;
if ( warn ) goto badop;
}
if ( putVal(x, OOF_ADDR | OOF_NUMBER | OOFS_NOSIGN | OOFW_32, warn) ) break;
//PASS THRU
case o_void:
badop:
return(false);
case o_imm:
if ( x.ref == 2 ) ++warn;
if ( putVal(x, OOFW_IMM | OOF_NUMBER | (x.ref ? OOFS_NOSIGN : OOF_SIGNED ),
warn)) break;
goto badop;
case o_mem:
if ( jasmin() ) goto putVarNum;
if ( x.ref ) {
putAddr:
++warn;
} else {
if ( outName(cmd.ea + x.offb, x.n, curSeg.DataBase, x.addr, &warn) ) break;
if ( warn ) goto badop;
}
putVarNum:
if ( putVal(x, OOF_ADDR | OOF_NUMBER | OOFS_NOSIGN | OOFW_16, warn) ) break;
goto badop;
case o_cpool:
if ( !x.cp_ind) OUT_KEYWORD("NULL" );
else {
if ( x.ref ) goto putAddr;
if ( !OutConstant(x) ) goto badop;
}
break;
case o_array:
if ( !x.ref ) {
int i = (uchar)x.cp_type - (T_BOOLEAN-1); // -1 - correct tp_decl
if ( i < 0 || i > T_LONG - (T_BOOLEAN-1) || chkOutKeyword(tp_decl[i].str, tp_decl[i].size) )
goto badop;
} else {
static const char tt_bogust[] = "BOGUST_TYPE-";
if ( !checkLine(sizeof(tt_bogust) + 2) ) goto badop;
out_tagon(COLOR_ERROR);
outcnt += out_snprintf("%c%s%u", WARN_SYM, tt_bogust, (uchar)x.cp_type);
out_tagoff(COLOR_ERROR);
}
break;
default:
warning("out: %a: bad optype %d", cmd.ip, x.type);
break;
}
return(true);
}
int main(int argc, char *argv[]){
QTime t;
t.start();
//START APP
QApplication app(argc,argv);
app.setWindowIcon(QIcon(":/data/img/11412394_407750046078820_6932822019341529347_n.jpg"));
QApplication::setApplicationName("Huffman");
QApplication::setApplicationVersion("ÚNICO");
QQmlApplicationEngine engine;
QQmlContext *interpreter = engine.rootContext();
Huffman huff;
DHuffman deHuff;
QCommandLineParser parser;
//Parser
parser.addHelpOption();
parser.addVersionOption();
parser.setApplicationDescription("Huffman Parsers");
parser.addPositionalArgument("in-file.x", QCoreApplication::translate("main", "File being compressed."));
parser.addPositionalArgument("out-name.huff", QCoreApplication::translate("main", "Name to save archive."));
//parser.addPositionalArgument("dir", QCoreApplication::translate("main", "Dir being compressed"));
parser.addPositionalArgument("local", QCoreApplication::translate("main", "Local to save archive."));
QCommandLineOption compress("c",QApplication::translate("main","Compress <in-file.x>."),
QApplication::translate("main","in-file.x"));
parser.addOption(compress);
QCommandLineOption outName("o",QApplication::translate("main","Save as <out-name.huff>."),
QApplication::translate("main","out-file.huff"));
parser.addOption(outName);
QCommandLineOption local("d",QApplication::translate("main","Decompress in <local>."),
QApplication::translate("main","local"));
parser.addOption(local);
QCommandLineOption startGui({"g", "gui"},QApplication::translate("main","Start gui."));
parser.addOption(startGui);
parser.process(app);
//ARGUMENTS
if(parser.isSet(startGui)){
interpreter->setContextProperty("_huff",&huff);
interpreter->setContextProperty("_dehuff",&deHuff);
engine.load(QUrl(QStringLiteral("qrc:/main.qml")));
}
else if(parser.isSet(compress) && parser.isSet(outName))
{
cout << "case 1" << endl;
huff.Huff(parser.value(compress),parser.value(outName));
}
else if(parser.isSet(compress))
{
cout << "case 2" << endl;
huff.Huff(parser.value(compress),parser.value(compress));
}
else{
if(app.arguments().size() == 1)
qDebug() << qPrintable(parser.helpText());
else if(parser.isSet(local))
deHuff.DHuff(app.arguments().at(1),parser.value(local));
else
deHuff.DHuff(app.arguments().at(1),app.arguments().at(1));
}
//END APP
qDebug("%s <> Tempo de execução: %d ms",Q_FUNC_INFO,t.elapsed());
return app.exec();
}
void MergeFastqWorkerFactory::init() {
Descriptor desc( ACTOR_ID, MergeFastqWorker::tr("FASTQ Merger"),
MergeFastqWorker::tr("Merges input sequences to one output file") );
QList<PortDescriptor*> p;
{
Descriptor inD(BaseNGSWorker::INPUT_PORT, MergeFastqWorker::tr("Input File"),
MergeFastqWorker::tr("Set of FASTQ reads files"));
Descriptor outD(BaseNGSWorker::OUTPUT_PORT, MergeFastqWorker::tr("Output File"),
MergeFastqWorker::tr("Output FASTQ file"));
QMap<Descriptor, DataTypePtr> inM;
inM[BaseSlots::URL_SLOT()] = BaseTypes::STRING_TYPE();
p << new PortDescriptor(inD, DataTypePtr(new MapDataType("cf.input-url", inM)), true);
QMap<Descriptor, DataTypePtr> outM;
outM[BaseSlots::URL_SLOT()] = BaseTypes::STRING_TYPE();
p << new PortDescriptor(outD, DataTypePtr(new MapDataType("cf.output-url", outM)), false, true);
}
QList<Attribute*> a;
{
Descriptor outDir(BaseNGSWorker::OUT_MODE_ID, MergeFastqWorker::tr("Output directory"),
MergeFastqWorker::tr("Select an output directory. <b>Custom</b> - specify the output directory in the 'Custom directory' parameter. "
"<b>Workflow</b> - internal workflow directory. "
"<b>Input file</b> - the directory of the input file."));
Descriptor customDir(BaseNGSWorker::CUSTOM_DIR_ID, MergeFastqWorker::tr("Custom directory"),
MergeFastqWorker::tr("Select the custom output directory."));
Descriptor outName(BaseNGSWorker::OUT_NAME_ID, MergeFastqWorker::tr("Output file name"),
MergeFastqWorker::tr("A name of an output file. If default of empty value is provided the output name is the name of the first file with additional extention."));
a << new Attribute(outDir, BaseTypes::NUM_TYPE(), false, QVariant(FileAndDirectoryUtils::WORKFLOW_INTERNAL));
Attribute* customDirAttr = new Attribute(customDir, BaseTypes::STRING_TYPE(), false, QVariant(""));
customDirAttr->addRelation(new VisibilityRelation(BaseNGSWorker::OUT_MODE_ID, FileAndDirectoryUtils::CUSTOM));
a << customDirAttr;
a << new Attribute( outName, BaseTypes::STRING_TYPE(), false, QVariant(BaseNGSWorker::DEFAULT_NAME));
}
QMap<QString, PropertyDelegate*> delegates;
{
QVariantMap directoryMap;
QString fileDir = MergeFastqWorker::tr("Input file");
QString workflowDir = MergeFastqWorker::tr("Workflow");
QString customD = MergeFastqWorker::tr("Custom");
directoryMap[fileDir] = FileAndDirectoryUtils::FILE_DIRECTORY;
directoryMap[workflowDir] = FileAndDirectoryUtils::WORKFLOW_INTERNAL;
directoryMap[customD] = FileAndDirectoryUtils::CUSTOM;
delegates[BaseNGSWorker::OUT_MODE_ID] = new ComboBoxDelegate(directoryMap);
delegates[BaseNGSWorker::CUSTOM_DIR_ID] = new URLDelegate("", "", false, true);
}
ActorPrototype* proto = new IntegralBusActorPrototype(desc, p, a);
proto->setEditor(new DelegateEditor(delegates));
proto->setPrompter(new MergeFastqPrompter());
WorkflowEnv::getProtoRegistry()->registerProto(BaseActorCategories::CATEGORY_NGS_BASIC(), proto);
DomainFactory *localDomain = WorkflowEnv::getDomainRegistry()->getById(LocalDomainFactory::ID);
localDomain->registerEntry(new MergeFastqWorkerFactory());
}
void QualityTrimWorkerFactory::init() {
Descriptor desc( ACTOR_ID, QualityTrimWorker::tr("FASTQ Quality Trimmer"),
QualityTrimWorker::tr("The workflow scans each input sequence from the end to find the first position where the quality is greater or equal to the minimum quality threshold. "
"Then it trims the sequence to that position. If a the whole sequence has quality less than the threshold or the length of the output sequence less than "
"the minimum length threshold then the sequence is skipped.") );
QList<PortDescriptor*> p;
{
Descriptor inD(BaseNGSWorker::INPUT_PORT, QualityTrimWorker::tr("Input File"),
QualityTrimWorker::tr("Set of FASTQ reads files"));
Descriptor outD(BaseNGSWorker::OUTPUT_PORT, QualityTrimWorker::tr("Output File"),
QualityTrimWorker::tr("Output FASTQ files"));
QMap<Descriptor, DataTypePtr> inM;
inM[BaseSlots::URL_SLOT()] = BaseTypes::STRING_TYPE();
p << new PortDescriptor(inD, DataTypePtr(new MapDataType("cf.input-url", inM)), true);
QMap<Descriptor, DataTypePtr> outM;
outM[BaseSlots::URL_SLOT()] = BaseTypes::STRING_TYPE();
p << new PortDescriptor(outD, DataTypePtr(new MapDataType("cf.output-url", outM)), false, true);
}
QList<Attribute*> a;
{
Descriptor outDir(BaseNGSWorker::OUT_MODE_ID, QualityTrimWorker::tr("Output directory"),
QualityTrimWorker::tr("Select an output directory. <b>Custom</b> - specify the output directory in the 'Custom directory' parameter. "
"<b>Workflow</b> - internal workflow directory. "
"<b>Input file</b> - the directory of the input file."));
Descriptor customDir(BaseNGSWorker::CUSTOM_DIR_ID, QualityTrimWorker::tr("Custom directory"),
QualityTrimWorker::tr("Select the custom output directory."));
Descriptor outName(BaseNGSWorker::OUT_NAME_ID, QualityTrimWorker::tr("Output file name"),
QualityTrimWorker::tr("A name of an output file. If default of empty value is provided the output name is the name of the first file with additional extention."));
Descriptor qualT(QUALITY_ID, QualityTrimWorker::tr("Quality threshold"),
QualityTrimWorker::tr("Quality threshold for trimming."));
Descriptor lenT(LEN_ID, QualityTrimWorker::tr("Min Length"),
QualityTrimWorker::tr("Too short reads are discarded by the filter."));
Descriptor bothD(BOTH_ID, QualityTrimWorker::tr("Trim both ends"),
QualityTrimWorker::tr("Trim the both ends of a read or not. Usually, you need to set <b>True</b> for <b>Sanger</b> sequencing and <b>False</b> for <b>NGS</b>"));
a << new Attribute(outDir, BaseTypes::NUM_TYPE(), false, QVariant(FileAndDirectoryUtils::WORKFLOW_INTERNAL));
Attribute* customDirAttr = new Attribute(customDir, BaseTypes::STRING_TYPE(), false, QVariant(""));
customDirAttr->addRelation(new VisibilityRelation(BaseNGSWorker::OUT_MODE_ID, FileAndDirectoryUtils::CUSTOM));
a << customDirAttr;
a << new Attribute( outName, BaseTypes::STRING_TYPE(), false, QVariant(BaseNGSWorker::DEFAULT_NAME));
a << new Attribute( qualT, BaseTypes:: NUM_TYPE(), false, QVariant(30));
a << new Attribute( lenT, BaseTypes::NUM_TYPE(), false, QVariant(0));
a << new Attribute( bothD, BaseTypes::BOOL_TYPE(), false, true);
}
QMap<QString, PropertyDelegate*> delegates;
{
QVariantMap directoryMap;
QString fileDir = QualityTrimWorker::tr("Input file");
QString workflowDir = QualityTrimWorker::tr("Workflow");
QString customD = QualityTrimWorker::tr("Custom");
directoryMap[fileDir] = FileAndDirectoryUtils::FILE_DIRECTORY;
directoryMap[workflowDir] = FileAndDirectoryUtils::WORKFLOW_INTERNAL;
directoryMap[customD] = FileAndDirectoryUtils::CUSTOM;
delegates[BaseNGSWorker::OUT_MODE_ID] = new ComboBoxDelegate(directoryMap);
delegates[BaseNGSWorker::CUSTOM_DIR_ID] = new URLDelegate("", "", false, true);
QVariantMap len; len["minimum"] = 0; len["maximum"] = INT_MAX;
delegates[QUALITY_ID] = new SpinBoxDelegate(len);
delegates[LEN_ID] = new SpinBoxDelegate(len);
}
ActorPrototype* proto = new IntegralBusActorPrototype(desc, p, a);
proto->setEditor(new DelegateEditor(delegates));
proto->setPrompter(new QualityTrimPrompter());
WorkflowEnv::getProtoRegistry()->registerProto(BaseActorCategories::CATEGORY_NGS_BASIC(), proto);
DomainFactory *localDomain = WorkflowEnv::getDomainRegistry()->getById(LocalDomainFactory::ID);
localDomain->registerEntry(new QualityTrimWorkerFactory());
}
int main(int argc, char* argv[])
{
if ( argc != 4 ) {
printf("Usage: %s configFile outputName randomSeed\n", argv[0]);
printf("You entered %i arguments.\n", argc-1);
return 0;
}
const char* configFile = argv[1];
const char* outArg = argv[2];
const long int randomSeed = atol(argv[3]);
char outTrajFile[256];
char outCurrFile[256];
sprintf(outTrajFile, "%s.pdb", outArg);
sprintf(outCurrFile, "curr_%s.dat", outArg);
printf("Brownian Dynamics initiated with command:\n");
for (int i = 0; i < argc; i++) printf("%s\n", argv[i]);
// Read the parameter file.
Reader config(configFile);
printf("Read config file %s.\n", configFile);
const int numParams = config.length();
const int numParts = config.countParameter("particle");
BrownianParticle* part = new BrownianParticle[numParts];
String* partGridFile = new String[numParts];
// Set the defaults.
String outName("out");
double timestep = 1e-4;
long int steps = 100;
int interparticleForce = 1;
int fullElect = 1;
double kT = 1.0;
double coulombConst = 566.440698/92.0;
double electricField = 0.0;
double cutoff = 10.0;
int outPeriod = 200;
// Set other parameters.
const int decompPeriod = 4;
const double switchLen = 2.0;
const double switchStart = cutoff-switchLen;
const double maxInitialPot = 0.5;
int currPart = -1;
for (int i = 0; i < numParams; i++) {
String param = config.getParameter(i);
String value = config.getValue(i);
if (param == String("outName")) outName = value;
else if (param == String("timestep")) timestep = strtod(value.val(), NULL);
else if (param == String("steps")) steps = atol(value.val());
else if (param == String("interparticleForce")) interparticleForce = atoi(value.val());
else if (param == String("fullElect")) fullElect = atoi(value.val());
else if (param == String("kT")) kT = strtod(value.val(), NULL);
else if (param == String("coulombConst")) coulombConst = strtod(value.val(), NULL);
else if (param == String("electricField")) electricField = strtod(value.val(), NULL);
else if (param == String("cutoff")) cutoff = strtod(value.val(), NULL);
else if (param == String("outPeriod")) outPeriod = atoi(value.val());
else if (param == String("particle")) { currPart++; part[currPart] = BrownianParticle(value); }
else if (param == String("num")) part[currPart].num = atoi(value.val());
else if (param == String("gridFile")) partGridFile[currPart] = value;
else if (param == String("diffusion")) part[currPart].diffusion = strtod(value.val(), NULL);
else if (param == String("charge")) part[currPart].charge = strtod(value.val(), NULL);
else if (param == String("radius")) part[currPart].radius = strtod(value.val(), NULL);
else if (param == String("eps")) part[currPart].eps = strtod(value.val(), NULL);
}
// Write the parameters.
printf("\nParameters: \n");
printf("outName %s\n", outName.val());
printf("timestep %.10g\n", timestep);
printf("steps %ld\n", steps);
printf("interparticleForce %d\n", interparticleForce);
printf("fullElect %d\n", fullElect);
printf("kT %.10g\n", kT);
printf("coulombConst %.10g\n", coulombConst);
printf("electricField %.10g\n", electricField);
printf("cutoff %.10g\n", cutoff);
printf("outPeriod %d\n", outPeriod);
// Write the particles.
printf("\nParticles:\n");
for (int i = 0; i < numParts; i++) {
printf("particle %s\n", part[i].name.val());
printf("num %d\n", part[i].num);
printf("gridFile %s\n", partGridFile[i].val());
printf("diffusion %.10g\n", part[i].diffusion);
printf("charge %.10g\n", part[i].charge);
printf("radius %.10g\n", part[i].radius);
printf("eps %.10g\n\n", part[i].eps);
}
// Load the potential grids.
printf("Loading the potential grids...\n");
for (int i = 0; i < numParts; i++) {
part[i].grid = new Grid(partGridFile[i].val());
printf("Loaded %s.\n", partGridFile[i].val());
printf("System size %s.\n", part[i].grid->getExtent().toString().val());
}
// Instantiate the Brownian Dynamics object.
BrownTown brown(kT, timestep, *(part[0].grid));
brown.setPeriodic(1,1,1);
// Seed the random number generator.
long int randomSeed1 = randomSeed;
for (int i = 0; i < 4; i++) randomSeed1 *= randomSeed1 + 1;
int seed = (unsigned int)time((time_t *)NULL) + randomSeed1;
printf("\nRandom number generator seed: %i\n", seed);
Random randoGen(seed);
// Get the total number of particles.
int num = 0;
for (int i = 0; i < numParts; i++) num += part[i].num;
// Get the system dimensions.
Vector3 sysDim = part[0].grid->getExtent();
Vector3 origin = part[0].grid->getOrigin();
Vector3 destin = part[0].grid->getDestination();
// Set initial conditions.
Vector3* pos = new Vector3[num];
Vector3* pos1 = new Vector3[num];
Vector3* posLast = new Vector3[num];
int* type = new int[num];
String* name = new String[num];
int pn = 0;
int p = 0;
for (int i = 0; i < num; i++) {
type[i] = p;
name[i] = part[p].name;
// Get the initial positions.
do {
pos[i] = brown.wrap(Vector3(sysDim.x*randoGen.uniform(),
sysDim.y*randoGen.uniform(),
sysDim.z*randoGen.uniform()));
} while (part[type[i]].grid->interpolatePotential(pos[i]) > maxInitialPot);
//pos[i] = part[0].grid->getCenter();
pos1[i] = pos[i];
posLast[i] = pos[i];
pn++;
if (pn >= part[p].num) {
p++;
pn = 0;
}
}
// Trajectory PDB
writePdbTraj(outTrajFile, pos, name, num, sysDim, 0.0);
//FILE* out = fopen(outCurrFile, "w");
// Prepare the force object.
ComputeForce internal(num, part, numParts, *(part[0].grid), switchStart, switchLen, coulombConst);
internal.decompose(pos);
Vector3* forceInternal = new Vector3[num];
for (int i = 0; i < num; i++) forceInternal[i] = 0.0;
Vector3 rando = randoGen.gaussian_vector();
////////////////////////////////////////////////////////////////
// Run the Brownian Dynamics steps.
clock_t clock0 = clock();
for (long int s = 0; s < steps; s++) {
// Compute the internal forces.
if (interparticleForce) {
switch (fullElect) {
case 0:
// Remake the cell decomposition.
if (s % decompPeriod == 0) internal.decompose(pos);
// Compute using the cell decomposition.
internal.compute(forceInternal, pos, type);
break;
case 1:
// Compute long range electrostatic forces.
internal.computeFull(forceInternal, pos, type);
break;
case 2:
// Compute only hardcore forces.
internal.computeHardcoreFull(forceInternal, pos, type);
break;
}
}
// Loop through the particles.
for (int i = 0; i < num; i++) {
// Compute the external forces.
Vector3 forceExternal = Vector3(0.0, 0.0, part[type[i]].charge*electricField);
Vector3 forceGrid = part[type[i]].grid->interpolateForce(pos[i]);
//Vector3 forceGrid = 0.0;
// Compute the total force.
Vector3 force = forceInternal[i] + forceExternal + forceGrid;
// Get the random kick.
Vector3 rando = randoGen.gaussian_vector();
// Step
pos1[i] = brown.stepPeriodic(pos[i], force, rando, part[type[i]].diffusion);
}
if (s % outPeriod == 0) {
appendPdbTraj(outTrajFile, pos1, name, num, sysDim, 0.0);
//computeCurrent(pos1, posLast);
for (int i = 0; i < num; i++) posLast[i] = pos1[i];
if (s % (10*outPeriod) == 0) {
double percent = (100.0*s)/steps;
clock_t clock1 = clock();
double stepTime = diffclock(clock0, clock1)/(10*outPeriod);
printf("step %ld, time %g, %.2f percent complete, %.1f ms/step\n", s, s*timestep, percent, stepTime);
clock0 = clock1;
}
}
// Swap the position pointers.
Vector3* temp = pos;
pos = pos1;
pos1 = temp;
}
//fclose(out);
delete[] pos;
delete[] pos1;
delete[] posLast;
delete[] type;
delete[] name;
delete[] part;
delete[] partGridFile;
delete[] forceInternal;
return 0;
}