/**
* Parse the file at filename, and populate the array at n.
* Return the number of nodes parsed on success, or -1 and set errno on
* failure.
*/
static int parse_graph_file(char *filename, node_t *n) {
FILE *f;
char buf[MAX_LENGTH];
int errno_copy;
int id = 0;
if ((f = fopen(filename,"r")) == NULL) {
return -1;
}
while (fgets(buf, MAX_LENGTH, f) != NULL) {
/* fgets retained the trailing newline; get rid of it */
strtok(buf, "\n");
if (parse_input_line(buf, id, n) == 0) {
n++;
id++;
}
else {
return -1;
}
}
/*
* Make sure that we actually reached the end of the file, and close it. The
* error-handling seems a bit odd here, but it's just because we want to
* retain any errno value that occurred during fgets rather than stomping on
* it with a possible fclose errno value.
*/
if (ferror(f)) {
errno_copy = errno;
fclose(f); /* Ignore error; it's not what we want to report */
errno = errno_copy;
return -1;
}
if (fclose(f) == EOF) {
return -1;
}
/* Otherwise return the number of nodes parsed */
// printf ("the number of nodes=%d\n", id);
return id;
}
int read_file(FILE * file, node_t * array[], int max_nodes) {
char line[max_nodes];
int count = 0;
while (fgets(line, MAX_LENGTH, file)) {
node_t * node = (node_t*)malloc(sizeof(node_t));
//parse node and check that it was properly created
if(parse_input_line(line, count, node) == 1){
array[count] = node;
count++;
} else {
perror("Could not produce node from line");
return -1;
}
}
link_nodes(array, count);
return count;
}
void process_input_line (
CNGSObject <ngs::ReferenceSequence, ncbi::String>& ref_obj,
char const* line, size_t line_size )
{
char const* key, *ref_name, *allele;
size_t key_len, ref_name_len, allele_len, ref_pos, del_len;
if ( parse_input_line ( line, line_size,
& key, & key_len,
& ref_name, & ref_name_len,
& allele, & allele_len,
& ref_pos, & del_len ) )
{
expand_variation ( ref_obj, key, key_len,
ref_name, ref_name_len,
ref_pos, del_len,
allele, allele_len );
}
}
int parse_cmd_lines(_MIPD_ int argc, char* argv[], char *globalptr) {
int len;
u32 secret_p[17], secret_q[17];
char public_key[0x81];
char secret_key[0x81];
u8 userhex[0x1000];
char str_skypename[0x1000];
char user_cred[0x101];
char str_remote_skype[1024];
char tmpdestip[1024];
char tmpdestport[1024];
char line1[0x1000];
char line2[0x1000];
int retcode;
int fd;
struct global_s *global;
global=(struct global_s *)globalptr;
memset(public_key,0,sizeof(public_key));
memset(secret_key,0,sizeof(secret_key));
if (argc!=2){
printf("usege: skydirect <our public ip>\n");
return -1;
};
strncpy(global->our_public_ip,argv[1],0x100);
fd=open("a_cred.txt",O_RDONLY);
len=read(fd,&line1,0x1000);
close(fd);
if (len<=0){
if(DEBUG_LEVEL>=100) printf("file open error\n");
return -1;
};
if (len>=0x1000){
if(DEBUG_LEVEL>=100) printf("file too big\n");
return -1;
};
line1[len]=0;
parse_input_line(line1, secret_p, secret_q, (char*)&str_skypename, (char*)&user_cred);
if(DEBUG_LEVEL>=100) printf("skypename=%s\n",str_skypename);
show_memory(user_cred,0x100,"cred:");
memcpy(global->CREDENTIALS,"\x00\x00\x00\x01",4);
memcpy(global->CREDENTIALS+4,user_cred,0x100);
global->CREDENTIALS_LEN=0x104;
//
fd=open("a_sendto.txt",O_RDONLY);
len=read(fd,&line2,0x1000);
close(fd);
if (len<=0){
if(DEBUG_LEVEL>=100) printf("file open error\n");
return -1;
};
if (len>=0x1000){
if(DEBUG_LEVEL>=100) printf("file too big\n");
return -1;
};
line2[len]=0;
retcode=parse_input_line2(line2, (u8 *)&userhex, (char *)&str_remote_skype, (char *)&tmpdestip, (char *)&tmpdestport);
if(DEBUG_LEVEL>=100) show_memory(userhex,0x08,"userhex id:");
memcpy(global->USERHEX,userhex,0x08);
if (retcode==-1){
printf("load parsing, at sendto file parsing error\n");
return -1;
};
if(DEBUG_LEVEL>=100) printf("remote_skypename=%s\n",str_remote_skype);
if(DEBUG_LEVEL>=100) printf("destip=%s\n",tmpdestip);
if(DEBUG_LEVEL>=100) printf("destport=%s\n",tmpdestport);
strncpy(global->user_snodeip,tmpdestip,1024);
global->user_snodeport=atoi(tmpdestport);
restore_user_keypair(_MIPP_ secret_p, secret_q, public_key, secret_key);
memcpy(global->xoteg_pub,public_key,0x80);
memcpy(global->xoteg_sec,secret_key,0x80);
show_memory(global->xoteg_pub,0x80,"xoteg_pubkey:");
show_memory(global->xoteg_sec,0x80,"xoteg_seckey:");
show_memory(global->CREDENTIALS,0x104,"CREDENTIALS:");
strcpy(global->REMOTE_NAME,str_remote_skype);
strcat(global->CHAT_STRING,"#");
strcat(global->CHAT_STRING,str_skypename);
strcat(global->CHAT_STRING,"/$");
strcat(global->CHAT_STRING,global->REMOTE_NAME);
strcat(global->CHAT_STRING,";");
strcat(global->CHAT_STRING,global->CHAT_RND_ID);
strcat(global->CHAT_PEERS,global->REMOTE_NAME);
strcat(global->CHAT_PEERS," ");
strcat(global->CHAT_PEERS,str_skypename);
if(DEBUG_LEVEL>=100) printf("CHAT_STRING: %s\n",global->CHAT_STRING);
if(DEBUG_LEVEL>=100) printf("REMOTE_NAME: %s\n",global->REMOTE_NAME);
if(DEBUG_LEVEL>=100) printf("CHAT_PEERS: %s\n",global->CHAT_PEERS);
fd=open("a_msg.txt",O_RDONLY);
len=read(fd,&global->MSG_TEXT,0x1000);
close(fd);
if (len<=0){
if(DEBUG_LEVEL>=100) printf("file open error\n");
return -1;
};
if (len>=0x1000){
if(DEBUG_LEVEL>=100) printf("file too big\n");
return -1;
};
global->MSG_TEXT[len]=0;
if(DEBUG_LEVEL>=100) printf("\nMSG_TEXT: %s\n",global->MSG_TEXT);
return 1;
}
int
do_test(char *input_buf)
{
int argc, seal_argc;
char **argv, **argv_array;
char *cmd;
int i, bufsize = 512;
char str_buf[512];
utf8string str;
uid_t uid;
gid_t gid;
int stat;
argv = 0;
if (parse_input_line(input_buf, &argc, &argv) == 0) {
printf(gettext("\n"));
return (1);
}
/*
* remember argv_array address, which is memory calloc'd by
* parse_input_line, so it can be free'd at the end of the loop.
*/
argv_array = argv;
if (argc < 1) {
usage();
free(argv_array);
return (0);
}
cmd = argv[0];
if (strcmp(cmd, "str2uid") == 0) {
if (argc < 2) {
usage();
free(argv_array);
return (0);
}
str.utf8string_val = argv[1];
str.utf8string_len = strlen(argv[1]);
stat = nfs_idmap_str_uid(&str, &uid);
printf(gettext("%d stat=%s \n"), uid, mapstat(stat));
} else if (strcmp(cmd, "str2gid") == 0) {
if (argc < 2) {
usage();
free(argv_array);
return (0);
}
str.utf8string_val = argv[1];
str.utf8string_len = strlen(argv[1]);
stat = nfs_idmap_str_gid(&str, &gid);
printf(gettext("%d stat=%s \n"), gid, mapstat(stat));
} else if (strcmp(cmd, "uid2str") == 0) {
if (argc < 2) {
usage();
free(argv_array);
return (0);
}
uid = atoi(argv[1]);
bzero(str_buf, bufsize);
str.utf8string_val = str_buf;
stat = nfs_idmap_uid_str(uid, &str);
printf(gettext("%s stat=%s\n"), str.utf8string_val,
mapstat(stat));
} else if (strcmp(cmd, "gid2str") == 0) {
if (argc < 2) {
usage();
free(argv_array);
return (0);
}
gid = atoi(argv[1]);
bzero(str_buf, bufsize);
str.utf8string_val = str_buf;
stat = nfs_idmap_gid_str(gid, &str);
printf(gettext("%s stat=%s\n"), str.utf8string_val,
mapstat(stat));
} else if (strcmp(cmd, "echo") == 0) {
for (i = 1; i < argc; i++)
printf("%s ", argv[i]);
printf("\n");
} else if (strcmp(cmd, "exit") == 0 ||
strcmp(cmd, "quit") == 0) {
printf(gettext("\n"));
free(argv_array);
return (1);
} else
usage();
/* free argv array */
free(argv_array);
return (0);
}
int parse_cmd_lines(_MIPD_ int argc, char* argv[], char *globalptr) {
int len;
u32 secret_p[17], secret_q[17];
char public_key[0x81];
char secret_key[0x81];
char str_skypename[0x1000];
char user_cred[0x101];
char str_remote_skype[1024];
char tmpdestip[1024];
char tmpdestport[1024];
char line1[0x1000];
char line2[0x1000];
int fd;
struct global_s *global;
global=(struct global_s *)globalptr;
memset(public_key,0,sizeof(public_key));
memset(secret_key,0,sizeof(secret_key));
fd=open("a_cred.txt",O_RDONLY);
len=read(fd,&line1,0x1000);
close(fd);
if (len<=0){
if(DEBUG_LEVEL>=100) printf("file open error\n");
return -1;
};
if (len>=0x1000){
if(DEBUG_LEVEL>=100) printf("file too big\n");
return -1;
};
line1[len]=0;
while(len>0){
if (line1[len]==0x0D){
line1[len]=0;
};
if (line1[len]==0x0A){
line1[len]=0;
};
len--;
}
len=strlen(line1);
//printf("%c %c\n",line1[len-2], line1[len-1] );
if ( (line1[len-2]==':') && (line1[len-1]=='2') ){
if (DEBUG_LEVEL>=100) printf("format version 2\n");
parse_input_line_type2(line1, (char*)&public_key, (char*)&secret_key, (char*)&str_skypename, (char*)&user_cred);
memcpy(global->xoteg_pub,public_key,0x80);
memcpy(global->xoteg_sec,secret_key,0x80);
show_memory(global->xoteg_pub,0x80,"xoteg_pubkey:");
show_memory(global->xoteg_sec,0x80,"xoteg_seckey:");
}else{
if (DEBUG_LEVEL>=100) printf("format version 1\n");
parse_input_line(line1, secret_p, secret_q, (char*)&str_skypename, (char*)&user_cred);
restore_user_keypair(_MIPP_ secret_p, secret_q, public_key, secret_key);
memcpy(global->xoteg_pub,public_key,0x80);
memcpy(global->xoteg_sec,secret_key,0x80);
show_memory(global->xoteg_pub,0x80,"xoteg_pubkey:");
show_memory(global->xoteg_sec,0x80,"xoteg_seckey:");
};
if(DEBUG_LEVEL>=100) printf("skypename=%s\n",str_skypename);
show_memory(user_cred,0x100,"cred:");
memcpy(global->CREDENTIALS,"\x00\x00\x00\x01",4);
memcpy(global->CREDENTIALS+4,user_cred,0x100);
global->CREDENTIALS_LEN=0x104;
//
fd=open("a_sendto.txt",O_RDONLY);
len=read(fd,&line2,0x1000);
close(fd);
if (len<=0){
if(DEBUG_LEVEL>=100) printf("file open error\n");
return -1;
};
if (len>=0x1000){
if(DEBUG_LEVEL>=100) printf("file too big\n");
return -1;
};
line2[len]=0;
parse_input_line2(line2, (char *)&str_remote_skype, (char *)&tmpdestip, (char *)&tmpdestport);
if(DEBUG_LEVEL>=100) printf("remote_skypename=%s\n",str_remote_skype);
if(DEBUG_LEVEL>=100) printf("destip=%s\n",tmpdestip);
if(DEBUG_LEVEL>=100) printf("destport=%s\n",tmpdestport);
strncpy(global->remoteip,tmpdestip,1024);
global->remoteport=atoi(tmpdestport);
show_memory(global->CREDENTIALS,0x104,"CREDENTIALS:");
strcpy(global->REMOTE_NAME,str_remote_skype);
strcat(global->CHAT_STRING,"#");
strcat(global->CHAT_STRING,str_skypename);
strcat(global->CHAT_STRING,"/$");
strcat(global->CHAT_STRING,global->REMOTE_NAME);
strcat(global->CHAT_STRING,";");
strcat(global->CHAT_STRING,global->CHAT_RND_ID);
strcat(global->CHAT_PEERS,global->REMOTE_NAME);
strcat(global->CHAT_PEERS," ");
strcat(global->CHAT_PEERS,str_skypename);
if(DEBUG_LEVEL>=100) printf("CHAT_STRING: %s\n",global->CHAT_STRING);
if(DEBUG_LEVEL>=100) printf("REMOTE_NAME: %s\n",global->REMOTE_NAME);
if(DEBUG_LEVEL>=100) printf("CHAT_PEERS: %s\n",global->CHAT_PEERS);
fd=open("a_msg.txt",O_RDONLY);
len=read(fd,&global->MSG_TEXT,0x1000);
close(fd);
if (len<=0){
if(DEBUG_LEVEL>=100) printf("file open error\n");
return -1;
};
if (len>=0x1000){
if(DEBUG_LEVEL>=100) printf("file too big\n");
return -1;
};
global->MSG_TEXT[len]=0;
if(DEBUG_LEVEL>=100) printf("\nMSG_TEXT: %s\n",global->MSG_TEXT);
return 0;
}