void test_four(FILE *log,int NFILE,t_filenm fnm[],t_atoms *atoms,
t_inputrec *ir,rvec x[],rvec f[],rvec box,real charge[],
real phi_f[],real phi_s[],int nmol,t_commrec *cr,
bool bOld,bool bOldEwald)
{
int i;
real energy;
if (bOldEwald)
energy = do_ewald(log,ir,atoms->nr,x,f,charge,box,phi_f,cr,bOld);
else
energy = do_ewald_new(log,ir,atoms->nr,x,f,charge,box,phi_f,cr,bOld);
/*symmetrize_phi(log,atoms->nr,phi_f,bVerbose);*/
/* Plot the long range fourier solution in a matrix */
plot_phi(opt2fn("-elf",NFILE,fnm),box,atoms->nr,x,phi_f);
print_phi(opt2fn("-of",NFILE,fnm),atoms->nr,x,phi_f);
calc_ener(log,"Fourier",FALSE,nmol,atoms->nr,phi_f,charge,&atoms->excl);
write_pqr(opt2fn("-pf",NFILE,fnm),atoms,x,phi_f,0.0/*1.5*box[XX]*/);
pr_f("four-force",atoms->nr,f);
/* Calc and plot the total potential */
for(i=0; (i<atoms->nr); i++) {
phi_f[i]+=phi_s[i];
/*clear_rvec(f[i]);*/
}
calc_ener(log,"Fourier+SR",FALSE,nmol,atoms->nr,phi_f,charge,&atoms->excl);
}
void conductDPBackward(int scanline,
int *phi,
int *pie_y,
int *pie_d,
int *dis,
int *no_igL,
int *no_igR,
int flag,
int scanline_interest)
{
int y, deltaa; /* the match following (y_p, delta_p) */
int y_p, delta_p; /* the current match */
int phi_new, phi_best;
int pie_y_best, pie_d_best;
/* printf("Starting...\n"); fflush(stdout); */
for (delta_p = 0 ; delta_p <= g_maxdisp ; delta_p++) {
phi[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*0+delta_p] = DEFAULT_COST + dis[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*0+delta_p];
pie_y[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*0+delta_p] = FIRST_MATCH;
pie_d[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*0+delta_p] = FIRST_MATCH;
}
for (y = 1 ; y < g_cols ; y++) {
/* printf("y=%d\n", y); fflush(stdout); */
for (deltaa = 0 ; deltaa <= g_maxdisp ; deltaa++) {
phi_best = INF;
for (delta_p = 0 ; delta_p <= g_maxdisp ; delta_p++) {
y_p = y - max(1, delta_p - deltaa + 1);
if (y_p>=0) {
if (deltaa==delta_p ||
(deltaa>delta_p && !no_igL[(g_cols+g_slop)*scanline+y+deltaa-1]) ||
(deltaa<delta_p && !no_igR[(g_cols+g_slop)*scanline+y_p+1])) {
phi_new =
occ_pen * (deltaa != delta_p);
if (scanline==scanline_interest && y==12) {
printf("## phi_new=%d\n", phi_new);
}
if (flag>0 && scanline>0) {
int s = phi[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*y_p+delta_p] +
phi[(g_cols+g_slop)*(scanline-1)+(g_maxdisp + 1)*y+deltaa];
if (scanline==scanline_interest && y==12) {
printf("## s=%d\n", s);
}
/* int n = 2; */
if (0 && deltaa>delta_p) {
int yy = y_p+1;
while (yy+delta_p<y+deltaa) {
if (yy<0 || yy>=g_cols+g_slop) printf("****yy=%d\n", yy);
assert(yy>=0 && yy<g_cols+g_slop);
assert(delta_p>=0 && delta_p<=g_maxdisp);
s += phi[(g_cols+g_slop)*(scanline-1)+(g_maxdisp + 1)*yy+delta_p];
/* n++; */
yy++;
}
} else if (0 && deltaa<delta_p) {
int yy = y_p+1;
while (yy<y) {
assert(yy>=0 && yy<g_cols+g_slop);
assert(delta_p>=0 && delta_p<=g_maxdisp);
s += phi[(g_cols+g_slop)*(scanline-1)+(g_maxdisp + 1)*yy+deltaa];
/* n++; */
yy++;
}
/* while (d<delta_p) { */
/* d++; */
/*s += phi[scanline-1][y][d]; */
/*n++; */
}
/* phi_new += (phi[scanline][y_p][delta_p] + */
/* phi[scanline-1][y][deltaa])/2; */
phi_new += s;
} else {
phi_new += phi[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*y_p+delta_p];
}
/* if (scanline==scanline_interest && y==549) printf("## delta=%2d, delta_p=%2d, phi_new=%d\n", deltaa, delta_p, phi_new); */
if (scanline==scanline_interest && y==12) {
printf("## phi_new=%d\n", phi_new);
}
if (phi_new < phi_best) {
if (scanline==scanline_interest && y==12) printf("!! New Phi_best !!\n");
phi_best = phi_new;
pie_y_best = y_p;
pie_d_best = delta_p;
}
}
}
}
if (scanline==scanline_interest && y==12) printf("--## delta=%2d, phi_best=%d\n", deltaa, phi_best);
phi[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*y+deltaa] = phi_best +
dis[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*y+deltaa] - reward;
/* if (scanline == scanline_interest && y<15 && deltaa==4) { */
/* printf("[%3d][%3d][%2d]: phi=%d\n", */
/* scanline, y, deltaa, phi[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*y+deltaa]); */
/*} */
pie_y[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*y+deltaa] = pie_y_best;
pie_d[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*y+deltaa] = pie_d_best;
}
}
if (scanline>0) {
for (y=0 ; y<g_cols ; y++)
for (deltaa=0 ; deltaa<=g_maxdisp ; deltaa++)
phi[(g_cols+g_slop)*scanline+(g_maxdisp + 1)*y+deltaa] /= ((scanline-1)*g_cols+y);
}
if (scanline==scanline_interest) {
/* print_phi(phi, scanline, 0, 50, 0, 14); */
print_phi(phi, scanline, 0, 150, 0, 5);
}
/* normalize_phi(scanline, phi, scanline_interest); */
/* if (scanline==scanline_interest) { */
/* print_phi(phi, scanline, 0, 50, 0, 14); */
/* print_phi(phi, scanline, 0, 150, 0, 5); */
/* } */
/* printf("Ending...\n"); fflush(stdout); */
}
void InstructionPrinter::do_BlockBegin(BlockBegin* x) {
// print block id
BlockEnd* end = x->end();
output()->print("B%d ", x->block_id());
// print flags
bool printed_flag = false;
if (x->is_set(BlockBegin::std_entry_flag)) {
if (!printed_flag) output()->print("(");
output()->print("S"); printed_flag = true;
}
if (x->is_set(BlockBegin::osr_entry_flag)) {
if (!printed_flag) output()->print("(");
output()->print("O"); printed_flag = true;
}
if (x->is_set(BlockBegin::exception_entry_flag)) {
if (!printed_flag) output()->print("(");
output()->print("E"); printed_flag = true;
}
if (x->is_set(BlockBegin::subroutine_entry_flag)) {
if (!printed_flag) output()->print("(");
output()->print("s"); printed_flag = true;
}
if (x->is_set(BlockBegin::parser_loop_header_flag)) {
if (!printed_flag) output()->print("(");
output()->print("LH"); printed_flag = true;
}
if (x->is_set(BlockBegin::backward_branch_target_flag)) {
if (!printed_flag) output()->print("(");
output()->print("b"); printed_flag = true;
}
if (x->is_set(BlockBegin::was_visited_flag)) {
if (!printed_flag) output()->print("(");
output()->print("V"); printed_flag = true;
}
if (printed_flag) output()->print(") ");
// print block bci range
output()->print("[%d, %d]",x->bci(),(end==NULL?InvocationEntryBci:end->bci()));
// print block successors
if (end != NULL && end->number_of_sux() > 0) {
output()->print(" ->");
for (int i = 0; i < end->number_of_sux(); i++) {
output()->print(" B%d", end->sux_at(i)->block_id());
}
}
// print exception handlers
if (x->number_of_exception_handlers() > 0) {
output()->print(" (xhandlers ");
for (int i = 0; i < x->number_of_exception_handlers(); i++) {
if (i > 0) output()->print(" ");
output()->print("B%d", x->exception_handler_at(i)->block_id());
}
output()->put(')');
}
// print dominator block
if (x->dominator() != NULL) {
output()->print(" dom B%d", x->dominator()->block_id());
}
// print predecessors and successors
if (x->successors()->length() > 0) {
output()->print(" sux:");
for (int i = 0; i < x->successors()->length(); i ++) {
output()->print(" B%d", x->successors()->at(i)->block_id());
}
}
if (x->number_of_preds() > 0) {
output()->print(" pred:");
for (int i = 0; i < x->number_of_preds(); i ++) {
output()->print(" B%d", x->pred_at(i)->block_id());
}
}
if (!_print_phis) {
return;
}
// print phi functions
bool has_phis_in_locals = false;
bool has_phis_on_stack = false;
if (x->end() && x->end()->state()) {
ValueStack* state = x->state();
int i = 0;
while (!has_phis_on_stack && i < state->stack_size()) {
Value v = state->stack_at_inc(i);
has_phis_on_stack = is_phi_of_block(v, x);
}
do {
for (i = 0; !has_phis_in_locals && i < state->locals_size();) {
Value v = state->local_at(i);
has_phis_in_locals = is_phi_of_block(v, x);
// also ignore illegal HiWords
if (v && !v->type()->is_illegal()) i += v->type()->size(); else i ++;
}
state = state->caller_state();
} while (state != NULL);
}
// print values in locals
if (has_phis_in_locals) {
output()->cr(); output()->print_cr("Locals:");
ValueStack* state = x->state();
do {
for (int i = 0; i < state->locals_size();) {
Value v = state->local_at(i);
if (v) {
print_phi(i, v, x); output()->cr();
// also ignore illegal HiWords
i += (v->type()->is_illegal() ? 1 : v->type()->size());
} else {
i ++;
}
}
output()->cr();
state = state->caller_state();
} while (state != NULL);
}
// print values on stack
if (has_phis_on_stack) {
output()->print_cr("Stack:");
int i = 0;
while (i < x->state()->stack_size()) {
int o = i;
Value v = x->state()->stack_at_inc(i);
if (v) {
print_phi(o, v, x); output()->cr();
}
}
}
}
