Beispiel #1
0
CommandLineProgramContext &initForCommandLine(int *argc, char ***argv)
{
    gmx::init(argc, argv);
    GMX_RELEASE_ASSERT(!g_commandLineContext,
                       "initForCommandLine() calls cannot be nested");
#ifdef GMX_LIB_MPI
    // TODO: Rewrite this to not use t_commrec once there is clarity on
    // the approach for MPI in C++ code.
    // TODO: Consider whether the argument broadcast would better be done
    // in CommandLineModuleManager.
    t_commrec cr;
    std::memset(&cr, 0, sizeof(cr));

    gmx_fill_commrec_from_mpi(&cr);
    if (PAR(&cr))
    {
        broadcastArguments(&cr, argc, argv);
    }
#endif
    try
    {
        g_commandLineContext.reset(new CommandLineProgramContext(*argc, *argv));
        setProgramContext(g_commandLineContext.get());
    }
    catch (const std::exception &ex)
    {
        printFatalErrorMessage(stderr, ex);
        std::exit(processExceptionAtExit(ex));
    }
    return *g_commandLineContext;
}
void initTestUtils(const char *dataPath, const char *tempPath, int *argc, char ***argv)
{
    gmx::initForCommandLine(argc, argv);
    try
    {
        ::testing::InitGoogleMock(argc, *argv);
        if (dataPath != NULL)
        {
            TestFileManager::setInputDataDirectory(dataPath);
        }
        if (tempPath != NULL)
        {
            TestFileManager::setGlobalOutputTempDirectory(tempPath);
        }
        bool    bHelp = false;
        Options options(NULL, NULL);
        // TODO: A single option that accepts multiple names would be nicer.
        // Also, we recognize -help, but GTest doesn't, which leads to a bit
        // unintuitive behavior.
        options.addOption(BooleanOption("h").store(&bHelp)
                          .description("Print GROMACS-specific unit test options"));
        options.addOption(BooleanOption("help").store(&bHelp).hidden());
        options.addOption(BooleanOption("?").store(&bHelp).hidden());
        // TODO: Consider removing this option from test binaries that do not need it.
        initReferenceData(&options);
        TestOptionsRegistry::getInstance().initOptions(&options);
        try
        {
            CommandLineParser(&options).parse(argc, *argv);
            options.finish();
        }
        catch (const UserInputError &)
        {
            printHelp(options);
            throw;
        }
        if (bHelp)
        {
            printHelp(options);
        }
        setFatalErrorHandler(NULL);
        initMPIOutput();
    }
    catch (const std::exception &ex)
    {
        printFatalErrorMessage(stderr, ex);
        std::exit(processExceptionAtExit(ex));
    }
}
Beispiel #3
0
CommandLineProgramContext &initForCommandLine(int *argc, char ***argv)
{
    gmx::init(argc, argv);
    GMX_RELEASE_ASSERT(!g_commandLineContext,
                       "initForCommandLine() calls cannot be nested");
    // TODO: Consider whether the argument broadcast would better be done
    // in CommandLineModuleManager.
    broadcastArguments(argc, argv);
    try
    {
        g_commandLineContext = compat::make_unique<CommandLineProgramContext>(*argc, *argv);
        setProgramContext(g_commandLineContext.get());
        g_libFileFinder = compat::make_unique<DataFileFinder>();
        g_libFileFinder->setSearchPathFromEnv("GMXLIB");
        setLibraryFileFinder(g_libFileFinder.get());
    }
    catch (const std::exception &ex)
    {
        printFatalErrorMessage(stderr, ex);
        std::exit(processExceptionAtExit(ex));
    }
    return *g_commandLineContext;
}
Beispiel #4
0
int processExceptionAtExitForCommandLine(const std::exception &ex)
{
    int rc = processExceptionAtExit(ex); // Currently this aborts for real MPI
    finalizeForCommandLine();            // thus this MPI_Finalize doesn't matter.
    return rc;
}