bool TrashImpl::infoForFile( int trashId, const TQString& fileId, TrashedFileInfo& info )
{
kdDebug() << k_funcinfo << trashId << " " << fileId << endl;
info.trashId = trashId; // easy :)
info.fileId = fileId; // equally easy
info.physicalPath = filesPath( trashId, fileId );
return readInfoFile( infoPath( trashId, fileId ), info, trashId );
}
void hgSanger20(char *database, char *gffFile, char *infoFile)
/* Process chromosome 20 gff file. */
{
struct hash *infoHash = readInfoFile(infoFile);
struct sanger22extra *sxList = processGff(gffFile, infoHash), *sx;
char *tabName = "extra.tab";
FILE *f = mustOpen(tabName, "w");
for (sx = sxList; sx != NULL; sx = sx->next)
sanger22extraTabOut(sx, f);
carefulClose(&f);
loadIntoDatabase(database, sanger22extraCreate, "sanger20extra", tabName);
}
VideoAsset::VideoAsset(bfs::path path) : path(path) {
try {
name = path.filename().string();
readInfoFile();
readTimetable();
readShotBoundaries();
readHistograms();
readMeans();
isReady = false;
if(hasTimetable && hasShotBoundaries && hasHistograms && hasMeans) {
if(frame2Timestamp.size() != histograms.size() ||
frame2Timestamp.size() != rgbMeans.size()) {
throw VideoAssetException("Info files have wrong format.");
}
isReady = true;
}
loadPlayerSync();
} catch (const bfs::filesystem_error& ex) {
(*Tobago.log)(Log::ERROR) << "Error loading video asset " << path.string() << ": " << ex.what();
throw VideoAssetException(ex.what());
}
}
void initTools() {
File elementsDir( NULL, "gameElements" );
if( !elementsDir.exists() || !elementsDir.isDirectory() ) {
return;
}
File *toolsDir = elementsDir.getChildFile( "tools" );
if( toolsDir == NULL ) {
return;
}
else if( !toolsDir->exists() || !toolsDir->isDirectory() ) {
delete toolsDir;
return;
}
int numTools;
File **toolNameDirs = toolsDir->getChildFiles( &numTools );
delete toolsDir;
if( toolNameDirs == NULL ) {
return;
}
for( int i=0; i<numTools; i++ ) {
File *f = toolNameDirs[i];
if( f->exists() && f->isDirectory() ) {
char completeRecord = true;
toolRecord r;
r.name = f->getFileName();
r.description = NULL;
r.descriptionPlural = NULL;
r.sprite = NULL;
File *infoFile = f->getChildFile( "info.txt" );
completeRecord = readInfoFile( infoFile,
&( r.id ), &( r.description ) );
delete infoFile;
if( completeRecord ) {
File *pluralFile = f->getChildFile( "plural.txt" );
completeRecord = readPluralFile( pluralFile,
&( r.descriptionPlural ) );
delete pluralFile;
}
if( completeRecord ) {
// read reach, if present (if not, default to 1)
r.reach = 1;
File *reachFile = f->getChildFile( "reach.txt" );
if( reachFile->exists() ) {
char *reach = reachFile->readFileContents();
sscanf( reach, "%d", &( r.reach ) );
delete [] reach;
}
delete reachFile;
File *reachSigFile = f->getChildFile( "reachSignature.txt" );
char *reachSigContents = NULL;
if( reachSigFile->exists() ) {
reachSigContents = reachSigFile->readFileContents();
}
delete reachSigFile;
char reachSigOK = true;
if( regenerateReachSignatures ) {
// ignore reachSignature.txt and generate a new one
char *newSig = computeReachSignature( &r );
File *childFile =
f->getChildFile( "reachSignature.txt" );
if( childFile != NULL ) {
childFile->writeToFile( newSig );
delete childFile;
}
delete [] newSig;
}
else if( reachSigContents == NULL ) {
reachSigOK = false;
}
else {
// else check it
char *sig = trimWhitespace( reachSigContents );
char *trueSig = computeReachSignature( &r );
if( strcmp( trueSig, sig ) != 0 ) {
reachSigOK = false;
}
delete [] sig;
delete [] trueSig;
}
if( reachSigContents != NULL ) {
delete [] reachSigContents;
}
if( !reachSigOK ) {
char *dirName = f->getFullFileName();
char *message = autoSprintf(
"%s\n%s",
translate( "badReachSignature" ),
dirName );
delete [] dirName;
loadingFailed( message );
delete [] message;
}
// look for sprite TGA
int numChildFiles;
File **childFiles = f->getChildFiles( &numChildFiles );
char *tgaPath = NULL;
char *shadeMapTgaPath = NULL;
for( int j=0; j<numChildFiles; j++ ) {
File *f = childFiles[j];
char *name = f->getFileName();
if( strstr( name, "_shadeMap.tga" ) != NULL ) {
if( shadeMapTgaPath != NULL ) {
delete [] shadeMapTgaPath;
}
shadeMapTgaPath = f->getFullFileName();
}
else if( strstr( name, ".tga" ) != NULL ) {
if( tgaPath != NULL ) {
delete [] tgaPath;
}
tgaPath = f->getFullFileName();
}
delete [] name;
delete childFiles[j];
}
delete [] childFiles;
if( tgaPath != NULL ) {
// assume only one orientation here
// discard extras
SpriteHandle readSprites[ MAX_ORIENTATIONS ];
int numOrientations =
readShadeMappedSprites( tgaPath, shadeMapTgaPath,
readSprites );
if( numOrientations == 0 ) {
completeRecord = false;
}
else {
r.sprite = readSprites[0];
for( int o=1; o<numOrientations; o++ ) {
freeSprite( readSprites[o] );
}
}
}
else {
if( shadeMapTgaPath != NULL ) {
delete [] shadeMapTgaPath;
}
completeRecord = false;
}
}
if( completeRecord ) {
if( r.id >= idSpaceSize ) {
idSpaceSize = r.id + 1;
}
tools.push_back( r );
}
else {
delete [] r.name;
if( r.description != NULL ) {
delete [] r.description;
}
if( r.descriptionPlural != NULL ) {
delete [] r.descriptionPlural;
}
if( r.sprite != NULL ) {
freeSprite( r.sprite );
}
}
}
delete f;
}
delete [] toolNameDirs;
// build map
idToIndexMap = new int[idSpaceSize];
for( int i=0; i<idSpaceSize; i++ ) {
idToIndexMap[i] = -1;
}
for( int i=0; i<tools.size(); i++ ) {
toolRecord r = *( tools.getElement( i ) );
idToIndexMap[r.id] = i;
}
}
void agpVsMap(char *agpName, char *infoName, char *gifName)
/* agpVsMap - Plot clones in agp vs. map coordinates. */
{
struct mapPos *mapList, *mp;
struct agpFrag *agpList, *bp;
struct hash *cloneHash = newHash(14);
struct hashEl *hel;
struct cloneInfo *cloneList = NULL, *clone;
struct memGfx *mg = NULL;
int pixWidth = 600;
int pixHeight = 600;
int rulerHeight = 20;
int maxMapPos = 0, maxAgpPos = 0;
double scaleMap, scaleAgp;
Color orange, green;
mapList = readInfoFile(infoName);
agpList = readAgpFile(agpName);
for (mp = mapList; mp != NULL; mp = mp->next)
{
if (mp->phase > 0)
{
AllocVar(clone);
hel = hashAddUnique(cloneHash, mp->cloneName, clone);
clone->name = hel->name;
clone->mp = mp;
slAddHead(&cloneList, clone);
if (mp->pos > maxMapPos) maxMapPos = mp->pos;
}
}
slReverse(&cloneList);
for (bp = agpList; bp != NULL; bp = bp->next)
{
if (bp->chromStart > maxAgpPos) maxAgpPos = bp->chromStart;
}
/* Draw scatterplot on bitmap. */
mg = mgNew(pixWidth, pixHeight);
mgClearPixels(mg);
orange = mgFindColor(mg, 210, 150, 0);
green = mgFindColor(mg, 0, 200, 0);
mgDrawRuler(mg, 0, pixHeight-rulerHeight, rulerHeight, pixWidth, MG_BLACK,
mgSmallFont(), 0, maxMapPos+1);
scaleMap = (double)pixWidth/(double)(maxMapPos+1.0);
scaleAgp = (double)(pixHeight)/(double)(maxAgpPos+1.0);
for (bp = agpList; bp != NULL; bp = bp->next)
{
char cloneName[128];
fragToCloneName(bp->frag, cloneName);
clone = hashFindVal(cloneHash, cloneName);
if (clone == NULL)
warn("%s is in %s but not %s", cloneName,
agpName, infoName);
else
{
int x = round(scaleMap*clone->mp->pos);
int y = pixHeight - round(scaleAgp*bp->chromStart);
int phase = clone->mp->phase;
int back;
if (phase <= 1) back = green;
else if (phase == 2) back = orange;
else back = MG_RED;
drawPlus(mg, x, y, back);
}
}
mgSaveGif(mg, gifName);
}
