C++ (Cpp) scoring_system_default Beispiele

Beispiel #1

Datei: sw_cmdline.c Projekt: DanielTillett/seq-align

static void sw_set_default_scoring()
{
  scoring_system_default(&scoring);

  // Change slightly
  scoring.match = 2;
  scoring.mismatch = -2;
  scoring.gap_open = -2;
  scoring.gap_extend = -1;
}

Beispiel #2

Datei: aligned_call.c Projekt: rec3141/mccortex

CallDecomp* call_decomp_init(htsFile *vcffh, bcf_hdr_t *vcfhdr)
{
  CallDecomp *dc = ctx_calloc(1, sizeof(CallDecomp));
  dc->nw_aligner = needleman_wunsch_new();
  dc->aln = alignment_create(1024);
  dc->scoring = ctx_calloc(1, sizeof(dc->scoring[0]));
  scoring_system_default(dc->scoring);
  dc->vcffh = vcffh;
  dc->vcfhdr = vcfhdr;
  dc->v = bcf_init();
  strbuf_alloc(&dc->sbuf, 256);
  return dc;
}